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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065690 ID=TCONS_00065690|Name=TCONS_00065690|organism=Clytia hemisphaerica|type=transcript|length=3311bp
AACGATATCTTTCTCATCTTTACACAAAAAATGTATTCGCTGTATTCGAG
GACAAATGAAAGTAACAGATTAATATGCAGATTAAATATGCATCTTactt
aattcatgatattcatgacgtaatcttttatacggaagcacccgagataa
cccggaactagtggcaaaatttgccactagtcttttgttattttgccact
agttccgggttatctcgggtgcttccgtataaaagattacgccatgaata
tcatgaataactcCACAATACAATAAAGTACAaaaattaatatatttttt
taataaacgaggaaaacgaagaaaaataactttaacaTTAACTATATTAC
TGTACTTCTACCTTTGTGATTGTGGTTGGATTATCGACAGAAATGACAAT
ATTTACCTCGCAAAGGTAATTAGTAATGAAAAACGTAAGTCACATCCAGA
TTTCGAGTCTTCAATCTCAAGGACAGGTTCCCATAGACAGGTTCCACTTC
CACTGGCCTTGTTTGCAAAACTTAGATTACTATGATGCTTACATCCATTA
CAATATTGTCTTTTGGGATACATTAGCCGTCGTGCAAATGCTCTACGTAT
ATGTTTGAAACGAGACTGTGTTTATTTCGAGAAAGTCCATTAAACTACTA
AAGTAAAGACACCTAAAATACACgattttcttataataaagaACAAACCA
CATGAGATAACATGAGGCTTCAATAGTCAAACAAAAGTTAAGAACAGGCT
AAGAACATTAAAGGCGCTTTTACACGGGCCAAGTTGGTCGGCTGacacac
tttttcaaaatttttgctcaaaacTCAACCAAAAATCATGGCAAAATCTG
TTCACAGTTTACAGATTGTCCGACAATTTTTGAGTCGTTGCATTGTAGCG
GGAGTTTTGCTTGGAAATGCTTGGAGGTTTTCAAAAAGTCGGCCGACAAA
ATTAGCTCGTGTAAAACGCCCTTAAGAACAGCCTTCTGAAAAAGATTTCT
TAAAATGAATACTTGAAAACAGCTAAAATGGctttattttaataaaaact
aAGAACGACTTAAGAATATGCGAAGGATTGATTTCAAAATCATTCAGAAA
ATCCGAGGCAATCGTATGAGTTTTGATACAAACATTTTTGTTGCAATTCT
TGAAATCTTGATGAATCATGATTGTGTAGAGCATCTTCAAATACTTTCCT
TAAAATNCACTGGCCTTGTTTGCAAAACTTAGATTACTATGATGCTTACA
TCCATTACAATATTGTCTTTTGGGATACATTAGCCGTCGTGCAAATGCTC
TACGTATATGTTTGAAACGAGACTGTGTTTATTTCGAGAAAGTCCATTAA
ACTACTAAAGTAAAGACACCTAAAATACACgattttcttataataaagaA
CAAACCACATGAGATAACATGAGGCTTCAATAGTCAAACAAAAGTTAAGA
ACAGGCTAAGAACATTAAAGGCGCTTTTACACGGGCCAAGTTGGTCGGCT
GacacactttttcaaaatttttgctcaaaacTCAACCAAAAATCATGGCA
AAATCTGTTCACAGTTTACAGATTGTCCGACAATTTTTGAGTCGTTGCAT
TGTAGCGGGAGTTTTGCTTGGAAATGCTTGGAGGTTTTCAAAAAGTCGGC
CGACAAAATTAGCTCGTGTAAAACGCCCTTAAGAACAGCCTTCTGAAAAA
GATTTCTTAAAATGAATACTTGAAAACAGCTAAAATGGctttattttaat
aaaaactaAGAACGACTTAAGAATATGCGAAGGATTGATTTCAAAATCAT
TCAGAAAATCCGAGGCAATCGTATGAGTTTTGATACAAACATTTTTGTTG
CAATTCTTGAAATCTTGATGAATCATGATTGTGTAGAGCATCTTCAAATA
CTTTCCTTAAAATCATACATGTATCAAGCTCACACTGATCAGTATCATAC
ACAGCCAGGTATTCAGAGGGCACCAACTTGCTTTTGTAGCGACGGAACCA
CTCCTTTGAAACTTCGATGGTTTTTTCGAAATCGATTCTGAGCATAGGTG
GATCGTAAAAAGGGAGGTCGCGTTGAAACCAATTTATTCGGAATTCACGC
TGTAAATCATCCTCGATCGATGCATTCTCGAGAAGGTTGACACCAGAGAT
GAAATGGTGTCTAATTTCTCGATTTGCCAGACCTCTGAGCACTTCATTTA
AAAGCACAACAAACCACTCGGATGCACTTTTTTCCTCATCATTTCCTGTG
GTCAGTGTGAGAAACAAGGACTTTAAATGGTAGGAGGTAAACTTCTTCTT
CAGAAAACCACCCAAGCGTAGGCCAAAGAAGCGATAATCGTTGAGCTCCG
TTTCTCGTAACATCTTTAAGCATTTGTAAGCTTCTTTCTGCTCTGGTGTA
ATCAAATTCATTAGCTTCGTTTCAGCACGAGAGAAAGACAGGCGAAACAT
CAACGGTAAATTTTTGACTGTGTCAGCTTTCTGAACTGGCGGTGTTTTAC
AAACGGTCGAAACTCCGCACTGTATTATCAAATCATATGCTTCTTTTGCT
AACTTGGTCTTGTATTTCTCTTTCCATTCAGCAGCGCAATCTGGCCAATA
TCCATTCAAATGAAACGAAAGAACTATATCAAGCGATTCGGTACTTTGAC
TACCCATCATGCAACCAGGCTTCTGTATTATGAAAGGCAAAGCAGCACCG
AGGCTTGTTACTCGCCGAAAGCTCGACACGTCCACCTTCTTTTTACCCCC
GAACTTATCTTTTTCGTCAAATTTATATCTAAGATCTAAGTTTACTAAAG
GATCTTTTTCGTCGTGTCTCGGCAATTCGTCGTAATGAAAAAGAAGCATG
AAAAAACGAAACATAATCTGGTCGGAGCTCAACAAACCAGAGTGGTTCTG
CAAATGTTGGAATTTGGTTGAATCCGGGGTGATGTAAACAAATCCTTTAC
ATTCGGGCACTTCCTCAACCGATTCGACGTCAATATcgtattgaatgaaa
aaatccaTCTCAAAAGGATTTCCTACTCGGACACCCTCAGCAGTGCTTCC
GGACGGAATGATTTTGTATCCAGCGAATGTTTCATCTTTAGAGACAGCAT
ATTCCATGAGTTTTTCTACCAATGATCGAGCAACTTTTCGATACTCGTCG
ACGGTTTCATCAGGAATGAGTATACTATTCGTATTTCTTTTAAGTGTATT
GCTCTTAGCAGCTTCCATCAGAGAGTCCGTCGGAATTCCTGCTCCTGATA
TATAAATCTTTGTCAATTTAACCACTGTTATTTCACCCGTCCTGGCTACA
AATTATCTCAA Run BLAST on NCBI protein sequence of TCONS_00065690-protein >TCONS_00065690-protein ID=TCONS_00065690-protein|Name=TCONS_00065690-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MEAAKSNTLKRNTNSILIPDETVDEYRKVARSLVEKLMEYAVSKDETFAG
YKIIPSGSTAEGVRVGNPFEMDFFIQYDIDVESVEEVPECKGFVYITPDS
TKFQHLQNHSGLLSSDQIMFRFFMLLFHYDELPRHDEKDPLVNLDLRYKF
DEKDKFGGKKKVDVSSFRRVTSLGAALPFIIQKPGCMMGSQSTESLDIVL
SFHLNGYWPDCAAEWKEKYKTKLAKEAYDLIIQCGVSTVCKTPPVQKADT
VKNLPLMFRLSFSRAETKLMNLITPEQKEAYKCLKMLRETELNDYRFFGL
RLGGFLKKKFTSYHLKSLFLTLTTGNDEEKSASEWFVVLLNEVLRGLANR
EIRHHFISGVNLLENASIEDDLQREFRINWFQRDLPFYDPPMLRIDFEKT
IEVSKEWFRRYKSKLVPSEYLAVYDTDQCELDTCMILRKVFEDALHNHDS
SRFQELQQKCLYQNSYDCLGFSE Run BLAST on NCBI transcript from alignment at scaffold_442:113426..116736 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065690 ID=TCONS_00065690|Name=TCONS_00065690|organism=Clytia hemisphaerica|type=transcript|length=3311bp|location=Sequence derived from alignment at scaffold_442:113426..116736 (Clytia hemisphaerica)
TTGAGATAATTTGTAGCCAGGACGGGTGAAATAACAGTGGTTAAATTGAC
AAAGATTTATATATCAGGAGCAGGAATTCCGACGGACTCTCTGATGGAAG
CTGCTAAGAGCAATACACTTAAAAGAAATACGAATAGTATACTCATTCCT
GATGAAACCGTCGACGAGTATCGAAAAGTTGCTCGATCATTGGTAGAAAA
ACTCATGGAATATGCTGTCTCTAAAGATGAAACATTCGCTGGATACAAAA
TCATTCCGTCCGGAAGCACTGCTGAGGGTGTCCGAGTAGGAAATCCTTTT
GAGAtggattttttcattcaatacgATATTGACGTCGAATCGGTTGAGGA
AGTGCCCGAATGTAAAGGATTTGTTTACATCACCCCGGATTCAACCAAAT
TCCAACATTTGCAGAACCACTCTGGTTTGTTGAGCTCCGACCAGATTATG
TTTCGTTTTTTCATGCTTCTTTTTCATTACGACGAATTGCCGAGACACGA
CGAAAAAGATCCTTTAGTAAACTTAGATCTTAGATATAAATTTGACGAAA
AAGATAAGTTCGGGGGTAAAAAGAAGGTGGACGTGTCGAGCTTTCGGCGA
GTAACAAGCCTCGGTGCTGCTTTGCCTTTCATAATACAGAAGCCTGGTTG
CATGATGGGTAGTCAAAGTACCGAATCGCTTGATATAGTTCTTTCGTTTC
ATTTGAATGGATATTGGCCAGATTGCGCTGCTGAATGGAAAGAGAAATAC
AAGACCAAGTTAGCAAAAGAAGCATATGATTTGATAATACAGTGCGGAGT
TTCGACCGTTTGTAAAACACCGCCAGTTCAGAAAGCTGACACAGTCAAAA
ATTTACCGTTGATGTTTCGCCTGTCTTTCTCTCGTGCTGAAACGAAGCTA
ATGAATTTGATTACACCAGAGCAGAAAGAAGCTTACAAATGCTTAAAGAT
GTTACGAGAAACGGAGCTCAACGATTATCGCTTCTTTGGCCTACGCTTGG
GTGGTTTTCTGAAGAAGAAGTTTACCTCCTACCATTTAAAGTCCTTGTTT
CTCACACTGACCACAGGAAATGATGAGGAAAAAAGTGCATCCGAGTGGTT
TGTTGTGCTTTTAAATGAAGTGCTCAGAGGTCTGGCAAATCGAGAAATTA
GACACCATTTCATCTCTGGTGTCAACCTTCTCGAGAATGCATCGATCGAG
GATGATTTACAGCGTGAATTCCGAATAAATTGGTTTCAACGCGACCTCCC
TTTTTACGATCCACCTATGCTCAGAATCGATTTCGAAAAAACCATCGAAG
TTTCAAAGGAGTGGTTCCGTCGCTACAAAAGCAAGTTGGTGCCCTCTGAA
TACCTGGCTGTGTATGATACTGATCAGTGTGAGCTTGATACATGTATGAT
TTTAAGGAAAGTATTTGAAGATGCTCTACACAATCATGATTCATCAAGAT
TTCAAGAATTGCAACAAAAATGTTTGTATCAAAACTCATACGATTGCCTC
GGATTTTCTGAATGATTTTGAAATCAATCCTTCGCATATTCTTAAGTCGT
TCTtagtttttattaaaataaagCCATTTTAGCTGTTTTCAAGTATTCAT
TTTAAGAAATCTTTTTCAGAAGGCTGTTCTTAAGGGCGTTTTACACGAGC
TAATTTTGTCGGCCGACTTTTTGAAAACCTCCAAGCATTTCCAAGCAAAA
CTCCCGCTACAATGCAACGACTCAAAAATTGTCGGACAATCTGTAAACTG
TGAACAGATTTTGCCATGATTTTTGGTTGAgttttgagcaaaaattttga
aaaagtgtgtCAGCCGACCAACTTGGCCCGTGTAAAAGCGCCTTTAATGT
TCTTAGCCTGTTCTTAACTTTTGTTTGACTATTGAAGCCTCATGTTATCT
CATGTGGTTTGTtctttattataagaaaatcGTGTATTTTAGGTGTCTTT
ACTTTAGTAGTTTAATGGACTTTCTCGAAATAAACACAGTCTCGTTTCAA
ACATATACGTAGAGCATTTGCACGACGGCTAATGTATCCCAAAAGACAAT
ATTGTAATGGATGTAAGCATCATAGTAATCTAAGTTTTGCAAACAAGGCC
AGTGNATTTTAAGGAAAGTATTTGAAGATGCTCTACACAATCATGATTCA
TCAAGATTTCAAGAATTGCAACAAAAATGTTTGTATCAAAACTCATACGA
TTGCCTCGGATTTTCTGAATGATTTTGAAATCAATCCTTCGCATATTCTT
AAGTCGTTCTtagtttttattaaaataaagCCATTTTAGCTGTTTTCAAG
TATTCATTTTAAGAAATCTTTTTCAGAAGGCTGTTCTTAAGGGCGTTTTA
CACGAGCTAATTTTGTCGGCCGACTTTTTGAAAACCTCCAAGCATTTCCA
AGCAAAACTCCCGCTACAATGCAACGACTCAAAAATTGTCGGACAATCTG
TAAACTGTGAACAGATTTTGCCATGATTTTTGGTTGAgttttgagcaaaa
attttgaaaaagtgtgtCAGCCGACCAACTTGGCCCGTGTAAAAGCGCCT
TTAATGTTCTTAGCCTGTTCTTAACTTTTGTTTGACTATTGAAGCCTCAT
GTTATCTCATGTGGTTTGTtctttattataagaaaatcGTGTATTTTAGG
TGTCTTTACTTTAGTAGTTTAATGGACTTTCTCGAAATAAACACAGTCTC
GTTTCAAACATATACGTAGAGCATTTGCACGACGGCTAATGTATCCCAAA
AGACAATATTGTAATGGATGTAAGCATCATAGTAATCTAAGTTTTGCAAA
CAAGGCCAGTGGAAGTGGAACCTGTCTATGGGAACCTGTCCTTGAGATTG
AAGACTCGAAATCTGGATGTGACTTACGTTTTTCATTACTAATTACCTTT
GCGAGGTAAATATTGTCATTTCTGTCGATAATCCAACCACAATCACAAAG
GTAGAAGTACAGTAATATAGTTAAtgttaaagttatttttcttcgttttc
ctcgtttattaaaaaaatatattaattttTGTACTTTATTGTATTGTGga
gttattcatgatattcatggcgtaatcttttatacggaagcacccgagat
aacccggaactagtggcaaaataacaaaagactagtggcaaattttgcca
ctagttccgggttatctcgggtgcttccgtataaaagattacgtcatgaa
tatcatgaattaagtAAGATGCATATTTAATCTGCATATTAATCTGTTAC
TTTCATTTGTCCTCGAATACAGCGAATACATTTTTTGTGTAAAGATGAGA
AAGATATCGTT Coding sequence (CDS) from alignment at scaffold_442:113426..116736 >TCONS_00065690 ID=TCONS_00065690|Name=TCONS_00065690|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_442:113426..116736 (Clytia hemisphaerica)
ATGGAAGCTGCTAAGAGCAATACACTTAAAAGAAATACGAATAGTATACT
CATTCCTGATGAAACCGTCGACGAGTATCGAAAAGTTGCTCGATCATTGG
TAGAAAAACTCATGGAATATGCTGTCTCTAAAGATGAAACATTCGCTGGA
TACAAAATCATTCCGTCCGGAAGCACTGCTGAGGGTGTCCGAGTAGGAAA
TCCTTTTGAGAtggattttttcattcaatacgATATTGACGTCGAATCGG
TTGAGGAAGTGCCCGAATGTAAAGGATTTGTTTACATCACCCCGGATTCA
ACCAAATTCCAACATTTGCAGAACCACTCTGGTTTGTTGAGCTCCGACCA
GATTATGTTTCGTTTTTTCATGCTTCTTTTTCATTACGACGAATTGCCGA
GACACGACGAAAAAGATCCTTTAGTAAACTTAGATCTTAGATATAAATTT
GACGAAAAAGATAAGTTCGGGGGTAAAAAGAAGGTGGACGTGTCGAGCTT
TCGGCGAGTAACAAGCCTCGGTGCTGCTTTGCCTTTCATAATACAGAAGC
CTGGTTGCATGATGGGTAGTCAAAGTACCGAATCGCTTGATATAGTTCTT
TCGTTTCATTTGAATGGATATTGGCCAGATTGCGCTGCTGAATGGAAAGA
GAAATACAAGACCAAGTTAGCAAAAGAAGCATATGATTTGATAATACAGT
GCGGAGTTTCGACCGTTTGTAAAACACCGCCAGTTCAGAAAGCTGACACA
GTCAAAAATTTACCGTTGATGTTTCGCCTGTCTTTCTCTCGTGCTGAAAC
GAAGCTAATGAATTTGATTACACCAGAGCAGAAAGAAGCTTACAAATGCT
TAAAGATGTTACGAGAAACGGAGCTCAACGATTATCGCTTCTTTGGCCTA
CGCTTGGGTGGTTTTCTGAAGAAGAAGTTTACCTCCTACCATTTAAAGTC
CTTGTTTCTCACACTGACCACAGGAAATGATGAGGAAAAAAGTGCATCCG
AGTGGTTTGTTGTGCTTTTAAATGAAGTGCTCAGAGGTCTGGCAAATCGA
GAAATTAGACACCATTTCATCTCTGGTGTCAACCTTCTCGAGAATGCATC
GATCGAGGATGATTTACAGCGTGAATTCCGAATAAATTGGTTTCAACGCG
ACCTCCCTTTTTACGATCCACCTATGCTCAGAATCGATTTCGAAAAAACC
ATCGAAGTTTCAAAGGAGTGGTTCCGTCGCTACAAAAGCAAGTTGGTGCC
CTCTGAATACCTGGCTGTGTATGATACTGATCAGTGTGAGCTTGATACAT
GTATGATTTTAAGGAAAGTATTTGAAGATGCTCTACACAATCATGATTCA
TCAAGATTTCAAGAATTGCAACAAAAATGTTTGTATCAAAACTCATACGA
TTGCCTCGGATTTTCTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00065690-exon-scaffold_442-1491911889:113426..116736 | TCONS_00065690-exon-scaffold_442-1491911889:113426..116736 | Clytia hemisphaerica | exon |
| TCONS_00065690-exon-scaffold_442-1510915933:113426..116736 | TCONS_00065690-exon-scaffold_442-1510915933:113426..116736 | Clytia hemisphaerica | exon |
| TCONS_00065690-exon-scaffold_442-1575043694:113426..116736 | TCONS_00065690-exon-scaffold_442-1575043694:113426..116736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_442 | supercontig | scaffold_442:113426..116736 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR024810 | Mab-21_dom |
Blast
The following BLAST results are available for this feature:
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