|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065680 ID=TCONS_00065680|Name=TCONS_00065680|organism=Clytia hemisphaerica|type=transcript|length=2115bpRun BLAST on NCBI protein sequence of TCONS_00065680-protein >TCONS_00065680-protein ID=TCONS_00065680-protein|Name=TCONS_00065680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp ETLRRSKHSGFKKDPLTMKVFVLLALLGVALAQDDCPAFVKQGCLSRDANRun BLAST on NCBI transcript from alignment at scaffold_442:66751..74294- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065680 ID=TCONS_00065680|Name=TCONS_00065680|organism=Clytia hemisphaerica|type=transcript|length=7544bp|location=Sequence derived from alignment at scaffold_442:66751..74294- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_442:66751..74294- >TCONS_00065680 ID=TCONS_00065680|Name=TCONS_00065680|organism=Clytia hemisphaerica|type=CDS|length=24228bp|location=Sequence derived from alignment at scaffold_442:66751..74294- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065680 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 9.334e-75 Identity = 70/144 (48.61%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 505 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 936
+ GGF WS W CS +CG Q+R R CN P+P NGG C +L E R C CPVDG W+E+S + EC+ SCG G+Q RTR+C NP+ HGG+ CEG+ + C PCPV G W+ + +G CS SCG G+Q R R C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC 4670 HSP 2 Score: 138.658 bits (348), Expect = 9.334e-75 Identity = 78/176 (44.32%), Postives = 112/176 (63.64%), Query Frame = 3
Query: 918 KKNTILXGKWTEYSEFGECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCP 1445
++N + GKW ++ + CS SCGGG+++RTR C++P P +GG++CEGSD C +DPCP G W + + C++ C GG R R+C+NP P GG+AC G + + CNT CPVDG WG++ ++SQC+ CGGG ++R R C++P P GG+ C G T CN Q CP
Sbjct: 4694 ERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 HSP 3 Score: 224.942 bits (572), Expect = 8.852e-61 Identity = 125/284 (44.01%), Postives = 185/284 (65.14%), Query Frame = 3
Query: 933 LXGKWTEYSEFGECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1784
+ G ++++S + CS +CG G QKR+R C P PA+GGK C+GSD + + C PCPVDG W + + +C + CG G+Q+R+R+CNNP+ ++GG+ C G+A + CN + CPV G W A+ + C++ CG G+Q+R+R CNNP P +GG C G+ T + CN +NCP+ GKW + ++S C+ CGGG++ R+R C++P P+YGG+ C GS S CN+ CP +G W WSG+G+C+R C G +R R+C+NP P G +C G Q + CNT C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 4 Score: 212.616 bits (540), Expect = 6.814e-57 Identity = 122/287 (42.51%), Postives = 175/287 (60.98%), Query Frame = 3
Query: 933 LXGKWTEYSEFGECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSCYSG 1793
+ G W+E+S + EC+ SCG G+Q RTR+C NP+ HGG+ CEG+ + C PCPV G W A+ + C++ CG G+Q+R+R CNNP P +GG C G+ T + CN +NCP+ GKW + ++S C+ CGGG++ R+R C++P P+YGG+ C GS S CN+ CP G W + + C++ C GG R R+C+NP P GG+AC G + + CNT CP++G WGSW + C+ CG G + R R C++P P G C G + Q CN +C G
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGG 4871 HSP 5 Score: 167.548 bits (423), Expect = 1.055e-42 Identity = 107/257 (41.63%), Postives = 153/257 (59.53%), Query Frame = 3
Query: 1050 ECEGSDEDEQEC------GTDPCPVDGKWGAYGAFSQ------CNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1784
+ + D E EC G+ V +G FSQ C+ CG G Q RSR CN P P GGK C GS + R C + CPVDG W + + +C + CG G+Q+R+R+CNNP+ ++GG+ C G+A + CN + CPV G W A+ + C++ CG G+Q+R+R CNNP P +GG C G+ T + CN +NCPI+GKW +W+ + +C+ CG G+++RTR C++P P+Y G C GS QS CN+ C
Sbjct: 4498 DAQKEDTSEFECVARNLMGSVLVRVPVIVQVHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 6 Score: 154.451 bits (389), Expect = 1.477e-38 Identity = 65/144 (45.14%), Postives = 90/144 (62.50%), Query Frame = 1
Query: 505 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 936
+ G + W W CS SCG Q R R CNNP P GG+ C E T+ + C+ CP+ GKW ++ +S CS SCGGG+++RTR C++P P +GG++CEGSD C +DPCP G W+ +S +G CS +C GG +R R+C
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAE-TQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTC 4784 HSP 7 Score: 146.747 bits (369), Expect = 4.895e-36 Identity = 63/144 (43.75%), Postives = 86/144 (59.72%), Query Frame = 1
Query: 505 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 936
+DG + WS W +C+ SCG Q R R+CNNP ++GG C E E C++ CPV G W+ + + CS SCG G+Q R R C NP PA GG C+G++ Q C CP+ GKW ++ + CS SCGGG+++RTR C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC-EGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGC 4727 HSP 8 Score: 145.591 bits (366), Expect = 1.132e-35 Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 1
Query: 505 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 936
I G + W+ W+ CS SCG ++R R C++PVP+ GG C E ++ C+ CP G W+ +S + CS +C GG +R R+C NP P++GG+ C G D Q C TD CPVDG W + + +CSASCGGG + R R C
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC-EGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841 HSP 9 Score: 104.375 bits (259), Expect = 9.416e-23 Identity = 46/115 (40.00%), Postives = 62/115 (53.91%), Query Frame = 1
Query: 511 GGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADC--PEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCP 849
G + WS W CS +C R R+C+NP P NGG C P+ ++ ++C+ CPVDG W + +S+CSASCGGG + R R C +P P GG+ C G C CP
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQI---QRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00065680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.