TCONS_00065680-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065680-protein
Unique NameTCONS_00065680-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length672

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065680-protein ID=TCONS_00065680-protein|Name=TCONS_00065680-protein|organism=Clytia hemisphaerica|type=polypeptide|length=672bp
ETLRRSKHSGFKKDPLTMKVFVLLALLGVALAQDDCPAFVKQGCLSRDAN
VFHQQVANNRDASSNVYTGKLLDWHNFKQSLGELGCACAKKVKELGGVAF
AMTFWGECWMATDKAAYEAHLMNPADQSGSCIGHDGSNYGSCAEGHGHCM
ADESSEYAYSFPSAAPPAIDGGFGNWSEWTQCSASCGDSFQERERSCNNP
VPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQK
RTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSAS
CGGGSQKRTRSCXVNGQSTVSSVNVQPRVEVDHKKEHDLAQTLHQHMVEK
NAKDLMKMNKNVELILAQLMVNGELMELSANVTSLVEVEANHDRDLATTL
HQSMEEKLVLDQPLTAEPVTHKTAQSMVNGELMALSANVTSLVEVEANHD
RDLAITPHQNTEEKLVLDQPLTAELVTLKTAQLMVNGELMELSANVTSLV
EVEANHDPDLATTLHQNTEEKLVLDQQLTAEPVTHKIVQSTENGDHGADM
DLVTENVEQEVKNEPDLVTILHQNTMVLHVQVHLNKAETATLTLVILDIW
NSKHAKDRHVMSIVDLEKSSNCTTTSGDELPSHTAEVVLIGSGAQAAEVV
MDVLPTDVTTDNHANWKLTIAG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041151XLOC_041151Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065680TCONS_00065680Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01705TSP1REPEATcoord: 171..184
score: 42.6
coord: 247..258
score: 47.02
coord: 266..277
score: 31.77
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 173..226
e-value: 1.9E-14
score: 64.0
coord: 231..283
e-value: 8.9E-15
score: 65.1
coord: 288..336
e-value: 0.0062
score: 25.7
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 227..282
e-value: 1.5E-17
score: 63.1
coord: 284..541
e-value: 4.8E-10
score: 39.1
coord: 169..225
e-value: 1.8E-16
score: 59.7
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 233..282
e-value: 9.9E-10
score: 38.4
coord: 174..225
e-value: 2.4E-10
score: 40.4
coord: 290..317
e-value: 6.7E-5
score: 22.9
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 170..226
score: 13.396
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 285..336
score: 9.386
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 228..283
score: 14.15
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 225..282
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 168..225
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 281..317

Blast
BLAST of TCONS_00065680-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 165.236 bits (417), Expect = 3.846e-42
Identity = 70/144 (48.61%), Postives = 89/144 (61.81%), Query Frame = 0
Query:  169 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 312
            + GGF  WS W  CS +CG   Q+R R CN P+P NGG  C   +L E R C    CPVDG W+E+S + EC+ SCG G+Q RTR+C NP+  HGG+ CEG+  +   C   PCPV G W+ +  +G CS SCG G+Q R R C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLC 4670          

HSP 2 Score: 159.458 bits (402), Expect = 2.597e-40
Identity = 66/147 (44.90%), Postives = 91/147 (61.90%), Query Frame = 0
Query:  166 PPAIDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 312
            P  + G +  W  W  CS SCG   Q R R CNNP P  GG+ C   E T+ + C+   CP+ GKW  ++ +S CS SCGGG+++RTR C++P P +GG++CEGSD     C +DPCP  G W+ +S +G CS +C GG  +R R+C
Sbjct: 4639 PCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAE-TQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTC 4784          

HSP 3 Score: 150.984 bits (380), Expect = 1.415e-37
Identity = 64/147 (43.54%), Postives = 87/147 (59.18%), Query Frame = 0
Query:  166 PPAIDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 312
            P  +DG +  WS W +C+ SCG   Q R R+CNNP  ++GG  C E    E   C++  CPV G W+ +  +  CS SCG G+Q R R C NP PA GG  C+G++   Q C    CP+ GKW  ++ +  CS SCGGG+++RTR C
Sbjct: 4582 PCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC-EGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGC 4727          

HSP 4 Score: 150.214 bits (378), Expect = 2.623e-37
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 0
Query:  169 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWTEYSEFGECSASCGGGSQKRTRSC 312
            I G +  W+ W+ CS SCG   ++R R C++PVP+ GG  C E    ++  C+   CP  G W+ +S +  CS +C GG  +R R+C NP P++GG+ C G D   Q C TD CPVDG W  +  + +CSASCGGG + R R C
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC-EGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841          

HSP 5 Score: 109.768 bits (273), Expect = 1.661e-24
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 0
Query:  153 ESSEYAYSFPSAAPPAIDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCP 283
            E S+    F ++ P    G +  WS W  CS +C      R R+C+NP P NGG  C   + ++ ++C+   CPVDG W  +  +S+CSASCGGG + R R C +P P  GG+ C G       C    CP
Sbjct: 4740 EGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPD-SQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACP 4869          
The following BLAST results are available for this feature:
BLAST of TCONS_00065680-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN13.846e-4248.61Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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