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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065676 ID=TCONS_00065676|Name=TCONS_00065676|organism=Clytia hemisphaerica|type=transcript|length=1485bpRun BLAST on NCBI transcript from alignment at scaffold_442:66751..73944- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065676 ID=TCONS_00065676|Name=TCONS_00065676|organism=Clytia hemisphaerica|type=transcript|length=7194bp|location=Sequence derived from alignment at scaffold_442:66751..73944- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065676 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 217.238 bits (552), Expect = 5.933e-60 Identity = 107/228 (46.93%), Postives = 146/228 (64.04%), Query Frame = 3
Query: 471 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1154
+ GGF WS W CS +CG Q+R R CN P+P NGG C +L E R C CPVDG W+E+S + EC+ SCG G+Q RTR+C NP+ HGG+ CEG+ + C PCPV G W A+ + C++ CG G+Q+R+R CNNP P +GG C G+ T + CN +NCPI+GKW +W+ + +C+ CG G+++RTR C++P P+Y G C GS QS CN+ C
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754 HSP 2 Score: 190.66 bits (483), Expect = 4.502e-51 Identity = 98/228 (42.98%), Postives = 136/228 (59.65%), Query Frame = 3
Query: 471 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSC 1154
+DG + WS W +C+ SCG Q R R+CNNP ++GG C E E C++ CPV G W+ + + CS SCG G+Q R R C NP PA GG C+G++ Q C CP+ GKW + ++S C+ CGGG++ R+R C++P P+YGG+ C GS S CN+ CP +G W WSG+G+C+R C G +R R+C+NP P G +C G Q + CNT C
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPC-EGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMC 4811 HSP 3 Score: 189.889 bits (481), Expect = 8.130e-51 Identity = 97/231 (41.99%), Postives = 134/231 (58.01%), Query Frame = 3
Query: 471 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCNRKCGTGSQKRTRSCNNPSPKYNGASCSGSSQQSRNCNTHSCYSG 1163
+ G + W W CS SCG Q R R CNNP P GG+ C E T+ + C+ CP+ GKW ++ +S CS SCGGG+++RTR C++P P +GG++CEGSD C +DPCP G W + + C++ C GG R R+C+NP P GG+AC G + + CNT CP++G WGSW + C+ CG G + R R C++P P G C G + Q CN +C G
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAE-TQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGG 4871 HSP 4 Score: 137.887 bits (346), Expect = 6.009e-34 Identity = 77/187 (41.18%), Postives = 109/187 (58.29%), Query Frame = 3
Query: 471 IDGGFGNWSEWTQCSASCGDSFQERERSCNNPVPKNGGADCPEEELTETRKCDVPACPVDGKWTEYSEFSECSASCGGGSQKRTRSCTNPAPAHGGKECEGSDEDEQECGTDPCPVDGKWGAYGAFSQCNKPCXXXXXXXXXXCNNPAPKYGGKACVGSATDSRACNTQNCPINGKWGSWSGYGSCN 1031
I G + W+ W+ CS SCG ++R R C++PVP+ GG C E ++ C+ CP G W+ +S + CS +C GG +R R+C NP P++GG+ C G D Q C TD CPVDG WG++ ++SQC+ CGGG ++R R C++P P GG+ C G T CN Q CP + S G+ N
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKC-EGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPGGPQRARGSVIGNIN 4884 The following BLAST results are available for this feature:
BLAST of TCONS_00065676 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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