TCONS_00065660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065660
Unique NameTCONS_00065660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length240

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065660 ID=TCONS_00065660|Name=TCONS_00065660|organism=Clytia hemisphaerica|type=transcript|length=240bp
CTAAAAGCACCCTTTACATCTtgaagctaaatgtaatcagcCATAAAAAT
TAGCAGGAAAATGAACTACTAACCAGAGAAACTCGATGAGAATATACTTT
CTGGCTACTGGTACTAATTTAGTAACTTAAAAATTCTGAACcaggtaaaa
aaaaatatttttataagaattatttACAGTATATGTACAAAAATATAATA
TGATCGATTAAACTTTCGcgagattttaattttttcaaac
Run BLAST on NCBI

transcript from alignment at scaffold_441:16347..16586

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065660 ID=TCONS_00065660|Name=TCONS_00065660|organism=Clytia hemisphaerica|type=transcript|length=240bp|location=Sequence derived from alignment at scaffold_441:16347..16586 (Clytia hemisphaerica)
gtttgaaaaaattaaaatctcgCGAAAGTTTAATCGATCATATTATATTT
TTGTACATATACTGTaaataattcttataaaaatatttttttttacctgG
TTCAGAATTTTTAAGTTACTAAATTAGTACCAGTAGCCAGAAAGTATATT
CTCATCGAGTTTCTCTGGTTAGTAGTTCATTTTCCTGCTAATTTTTATGg
ctgattacatttagcttcaAGATGTAAAGGGTGCTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041141XLOC_041141Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065660-exon-scaffold_441-1491911889:16347..16586TCONS_00065660-exon-scaffold_441-1491911889:16347..16586Clytia hemisphaericaexon
TCONS_00065660-exon-scaffold_441-1510915933:16347..16586TCONS_00065660-exon-scaffold_441-1510915933:16347..16586Clytia hemisphaericaexon
TCONS_00065660-exon-scaffold_441-1575043694:16347..16586TCONS_00065660-exon-scaffold_441-1575043694:16347..16586Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_441supercontigscaffold_441:16347..16586 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.899447	3.50841	6.1104	4.44834	0	0	1.15638	0	0	0.938839	0	0.599027	1.19639	0	1.02147	0	2.70085	3.46035	0.956132	2.22058	2.76855	2.77387	1.03129	0.937591	1.93139	0	1.65054	3.9487	4.30424	2.03425
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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