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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065645 ID=TCONS_00065645|Name=TCONS_00065645|organism=Clytia hemisphaerica|type=transcript|length=1530bp
GTCAAACTAAACATAACAAAATAcataaatgaaatttaaataaTAGGATT
TACAATTCCAATTTTAGATTTCAGGAAGAATATTATCTAAATATGATTTG
CAATCatataaatattttgatattagtTTCCTTTGTAACGTTCTCGGGGG
TTGAAAAGACTTATTTGATATAGGATATATAATTTATAGACACAAGAAAC
TATTGGGCATTTCATTATCCTAACATTAGAGCTTTCCTCGTACAAAGTAC
AAACtggaaatatttcttttaatattttttatcttatttaccGGCTAGAG
AAGTTATTAAAGTTgtttgtcttgtgattcttaagCCTGTTCGATAAGAA
AGCTTAAACTTCTATCGCGGAAGCCACTCCTGTAGTAGGTTGTAGTTCCA
TGATAAAATACAAGGACATTCAGGGACATTGCTTTATATCCACATACATC
ATCTTGAAAATTCTCAGAAAAATAAATCTCAAGTTTATATCGTTAAAGCA
TAATTAATTCAAACGACCATGAAGTCGTTGTTTTAAACTAAATTTCACTA
GCCTGTATCATTTTAACAAGCAGTTAACACATGTACGAGGATCACAGTCT
CTTGAACATGGATGATGACACAACAAAAAGTCGTTTTCAAACTGTAAGCA
TGCTGACATACAGTCGACCATGCATTGAACAGCATGGGCNTGAACATGGA
TGATGACACAACAAAAAGTCGTTTTCAAACTGTAAGCATGCTGACATACA
GTCGATCATGCATTGAACAGCATGGGCGTGAAGCTCATCATTTGTCAATT
GCCTCTTGTGGATGGTGTAATCTTTGATCGGTTGAAACCAGTGGATTTTG
TCTTTTCGCACGTTAACTCTGTCATTCCTTATCGATTGCATCTTGTGAGG
TGTGTTGTCTTCCGTAGATTGAATCCAGTGTGTTATGTCTTTTCGGTTTT
TACTCGTGCCATCTTTCGAGTGCATCTTCTGATATGTGCTGTCTTTGCTC
AATCGAATCCAGTGGGTTGAGTCCTTTCGCCTATAATCTCTACCTCTCAA
GTGCATCTTGTGAAAGGTGTCACCTTCAATTGTGTGGAACGTGTCTCTTA
TTTTTGAACGTGACTCACTCTGGTGAGGTATATTGTGTTTGATGAGTTGA
TTCCTTTGAAAGAAGTCTCCTCTCCTTGTGACTTGATTCAGTTTATTCTT
TTGGACTCCAGCGTTCCGTTTTCCTGAAAGGTTCTTAGGGTTGGTATAAT
AAAGCTTAGCGGAAGCATCACCAGTTCCTCTAGATGATTCTTGGCGGAAG
AATTCGTTTGAATCTAATTTCCAATTTGTCTTAAATCTCCTCGCTTTGGA
AATTTGTAAAACGGCGACAAAGACTAAAAAGCTCGTACTCTTCATTATAG
ATAAGTTTTTGCTTTGAGCAGTACTTCGTTATATACACAAAATCTGACTG
AAACAGTAAAGGCTGTATCGTGACAgaaaactttttgtattttgatgtta
aataattgacaaaaaattactaaataggac Run BLAST on NCBI protein sequence of TCONS_00065645-protein >TCONS_00065645-protein ID=TCONS_00065645-protein|Name=TCONS_00065645-protein|organism=Clytia hemisphaerica|type=polypeptide|length=252bp
MKSTSFLVFVAVLQISKARRFKTNWKLDSNEFFRQESSRGTGDASAKLYY
TNPKNLSGKRNAGVQKNKLNQVTRRGDFFQRNQLIKHNIPHQSESRSKIR
DTFHTIEGDTFHKMHLRGRDYRRKDSTHWIRLSKDSTYQKMHSKDGTSKN
RKDITHWIQSTEDNTPHKMQSIRNDRVNVRKDKIHWFQPIKDYTIHKRQL
TNDELHAHAVQCMIDCMSACLQFENDFLLCHHPCSXPCCSMHGRLYVSML
TV Run BLAST on NCBI transcript from alignment at scaffold_440:529470..530999 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065645 ID=TCONS_00065645|Name=TCONS_00065645|organism=Clytia hemisphaerica|type=transcript|length=1530bp|location=Sequence derived from alignment at scaffold_440:529470..530999 (Clytia hemisphaerica)
gtcctatttagtaattttttgtcaattatttaacatcaaaatacaaaaag
ttttcTGTCACGATACAGCCTTTACTGTTTCAGTCAGATTTTGTGTATAT
AACGAAGTACTGCTCAAAGCAAAAACTTATCTATAATGAAGAGTACGAGC
TTTTTAGTCTTTGTCGCCGTTTTACAAATTTCCAAAGCGAGGAGATTTAA
GACAAATTGGAAATTAGATTCAAACGAATTCTTCCGCCAAGAATCATCTA
GAGGAACTGGTGATGCTTCCGCTAAGCTTTATTATACCAACCCTAAGAAC
CTTTCAGGAAAACGGAACGCTGGAGTCCAAAAGAATAAACTGAATCAAGT
CACAAGGAGAGGAGACTTCTTTCAAAGGAATCAACTCATCAAACACAATA
TACCTCACCAGAGTGAGTCACGTTCAAAAATAAGAGACACGTTCCACACA
ATTGAAGGTGACACCTTTCACAAGATGCACTTGAGAGGTAGAGATTATAG
GCGAAAGGACTCAACCCACTGGATTCGATTGAGCAAAGACAGCACATATC
AGAAGATGCACTCGAAAGATGGCACGAGTAAAAACCGAAAAGACATAACA
CACTGGATTCAATCTACGGAAGACAACACACCTCACAAGATGCAATCGAT
AAGGAATGACAGAGTTAACGTGCGAAAAGACAAAATCCACTGGTTTCAAC
CGATCAAAGATTACACCATCCACAAGAGGCAATTGACAAATGATGAGCTT
CACGCCCATGCTGTTCAATGCATGATCGACTGTATGTCAGCATGCTTACA
GTTTGAAAACGACTTTTTGTTGTGTCATCATCCATGTTCANGCCCATGCT
GTTCAATGCATGGTCGACTGTATGTCAGCATGCTTACAGTTTGAAAACGA
CTTTTTGTTGTGTCATCATCCATGTTCAAGAGACTGTGATCCTCGTACAT
GTGTTAACTGCTTGTTAAAATGATACAGGCTAGTGAAATTTAGTTTAAAA
CAACGACTTCATGGTCGTTTGAATTAATTATGCTTTAACGATATAAACTT
GAGATTTATTTTTCTGAGAATTTTCAAGATGATGTATGTGGATATAAAGC
AATGTCCCTGAATGTCCTTGTATTTTATCATGGAACTACAACCTACTACA
GGAGTGGCTTCCGCGATAGAAGTTTAAGCTTTCTTATCGAACAGGcttaa
gaatcacaagacaaacAACTTTAATAACTTCTCTAGCCggtaaataagat
aaaaaatattaaaagaaatatttccaGTTTGTACTTTGTACGAGGAAAGC
TCTAATGTTAGGATAATGAAATGCCCAATAGTTTCTTGTGTCTATAAATT
ATATATCCTATATCAAATAAGTCTTTTCAACCCCCGAGAACGTTACAAAG
GAAactaatatcaaaatatttatatGATTGCAAATCATATTTAGATAATA
TTCTTCCTGAAATCTAAAATTGGAATTGTAAATCCTAttatttaaatttc
atttatgTATTTTGTTATGTTTAGTTTGAC Coding sequence (CDS) from alignment at scaffold_440:529470..530999 >TCONS_00065645 ID=TCONS_00065645|Name=TCONS_00065645|organism=Clytia hemisphaerica|type=CDS|length=759bp|location=Sequence derived from alignment at scaffold_440:529470..530999 (Clytia hemisphaerica)
ATGAAGAGTACGAGCTTTTTAGTCTTTGTCGCCGTTTTACAAATTTCCAA
AGCGAGGAGATTTAAGACAAATTGGAAATTAGATTCAAACGAATTCTTCC
GCCAAGAATCATCTAGAGGAACTGGTGATGCTTCCGCTAAGCTTTATTAT
ACCAACCCTAAGAACCTTTCAGGAAAACGGAACGCTGGAGTCCAAAAGAA
TAAACTGAATCAAGTCACAAGGAGAGGAGACTTCTTTCAAAGGAATCAAC
TCATCAAACACAATATACCTCACCAGAGTGAGTCACGTTCAAAAATAAGA
GACACGTTCCACACAATTGAAGGTGACACCTTTCACAAGATGCACTTGAG
AGGTAGAGATTATAGGCGAAAGGACTCAACCCACTGGATTCGATTGAGCA
AAGACAGCACATATCAGAAGATGCACTCGAAAGATGGCACGAGTAAAAAC
CGAAAAGACATAACACACTGGATTCAATCTACGGAAGACAACACACCTCA
CAAGATGCAATCGATAAGGAATGACAGAGTTAACGTGCGAAAAGACAAAA
TCCACTGGTTTCAACCGATCAAAGATTACACCATCCACAAGAGGCAATTG
ACAAATGATGAGCTTCACGCCCATGCTGTTCAATGCATGATCGACTGTAT
GTCAGCATGCTTACAGTTTGAAAACGACTTTTTGTTGTGTCATCATCCAT
GTTCANGCCCATGCTGTTCAATGCATGGTCGACTGTATGTCAGCATGCTT
ACAGTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065645-exon-scaffold_440-1491911889:529470..530999 | TCONS_00065645-exon-scaffold_440-1491911889:529470..530999 | Clytia hemisphaerica | exon |
| TCONS_00065645-exon-scaffold_440-1510915933:529470..530999 | TCONS_00065645-exon-scaffold_440-1510915933:529470..530999 | Clytia hemisphaerica | exon |
| TCONS_00065645-exon-scaffold_440-1575043694:529470..530999 | TCONS_00065645-exon-scaffold_440-1575043694:529470..530999 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:529470..530999 . |
Blast
The following BLAST results are available for this feature:
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