TCONS_00065644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065644
Unique NameTCONS_00065644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065644 ID=TCONS_00065644|Name=TCONS_00065644|organism=Clytia hemisphaerica|type=transcript|length=632bp
TTTTAGTATCTTCTGTATAATAAGTGCTGTTGGATACAAAAGGAAAATGA
CACATATACTTAAGCCCCATACCACTTTTTTTCATCGAACCTTACAGAAG
GCCTAAGTCTAAGTCTTAGtttaaaattccaaatttttaaatataattga
aagaaaaaaagaaaaacactagACCTCCCTCAAAGTTAGATGTCAATGTT
ACTTCATTATTTTGTGTCCAAATGAAACTATTTTACTTTGTCCGGAATTT
CATCGAATCAATGACTTTCGGACACAGTTCGGACATCTTTGTCGACCAAG
ACAATGATTTTTACACATCATTTCACAGTTCTCGAAATCATTGTTAAATG
TTAAACAAATCTTCATAGAAAATCTCATACAAAATGCGAAGTTTCCAGTT
TGTTGTCTTTTTGTCATAATTCTGTTACTTTGAATGACGGCTTCTGATAA
GGTACTTTGTAAAAGAACCAAAGCTGTCAGTAAGATTATACGAATGGTAA
GAAAATTCTTCATGTTGTTTGGTCAAGAACGAAAGATTTTGCGCAAAAAC
TAAATGATCGAAGAtgctttttgttgattttctggGGTGTGTGTCGAGAA
TACTCACAATCTTTTTCTTATCGCTTCTAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_440:528572..529203

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065644 ID=TCONS_00065644|Name=TCONS_00065644|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at scaffold_440:528572..529203 (Clytia hemisphaerica)
GTCTAGAAGCGATAAGAAAAAGATTGTGAGTATTCTCGACACACACCcca
gaaaatcaacaaaaagcaTCTTCGATCATTTAGTTTTTGCGCAAAATCTT
TCGTTCTTGACCAAACAACATGAAGAATTTTCTTACCATTCGTATAATCT
TACTGACAGCTTTGGTTCTTTTACAAAGTACCTTATCAGAAGCCGTCATT
CAAAGTAACAGAATTATGACAAAAAGACAACAAACTGGAAACTTCGCATT
TTGTATGAGATTTTCTATGAAGATTTGTTTAACATTTAACAATGATTTCG
AGAACTGTGAAATGATGTGTAAAAATCATTGTCTTGGTCGACAAAGATGT
CCGAACTGTGTCCGAAAGTCATTGATTCGATGAAATTCCGGACAAAGTAA
AATAGTTTCATTTGGACACAAAATAATGAAGTAACATTGACATCTAACTT
TGAGGGAGGTctagtgtttttctttttttctttcaattatatttaaaaat
ttggaattttaaaCTAAGACTTAGACTTAGGCCTTCTGTAAGGTTCGATG
AAAAAAAGTGGTATGGGGCTTAAGTATATGTGTCATTTTCCTTTTGTATC
CAACAGCACTTATTATACAGAAGATACTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041132XLOC_041132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065644-exon-scaffold_440-1491911889:528572..529203TCONS_00065644-exon-scaffold_440-1491911889:528572..529203Clytia hemisphaericaexon
TCONS_00065644-exon-scaffold_440-1510915933:528572..529203TCONS_00065644-exon-scaffold_440-1510915933:528572..529203Clytia hemisphaericaexon
TCONS_00065644-exon-scaffold_440-1575043694:528572..529203TCONS_00065644-exon-scaffold_440-1575043694:528572..529203Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:528572..529203 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0838717	0.245364	0	0	0.113106	0	0.10783	0.100949	2.04964	0.962995	1.01968	2.17847	0.278902	0.347571	0	0	1.07036	0.387205	1.42652	0.932969	4.29787	1.5426	2.11564	3.49714	1.35074	0.803669	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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