TCONS_00065640 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065640
Unique NameTCONS_00065640
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length799

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065640 ID=TCONS_00065640|Name=TCONS_00065640|organism=Clytia hemisphaerica|type=transcript|length=799bp
TCCCCATACTTCGTACTAAACTCCAAAAATAGCCGTTCGGTTAAGTTAAT
GCGCCTTTACACCTTATCCAACACTTGATATCTAACAAAAATGGGAAATT
TGGGTAGGGTGGAAACCATATAAgacagaaatttaaaaagtgaaaatctg
CCACGCCCACTTGCTTTCACAATACATTGTATGTGTATTAAATGCAATCG
AGCTGAAAAAGTTGTCCTTAGAGAAAGGAACAAAAGAGAGTGGTAACTTA
CCAGAAGTTTAGAATTTTAAATTCTTGAATGATCAAATCTTGTGATCACA
CTGAATCAAAGTTCAACAGTGACAAAAAACTTCTCTATCTGTAATGTTAT
ACCAAGTGATAGGAAGATACCCCTCTTTGTTATTTGAACAAGCATTTAAC
AAGAAAAATCACATTAGTTTTTTTATCACGAGGTTGCCTTGGATTACAAG
TCATTACTCAATCATCTCAATTATTGCTGTCTATTATTTGTTCTCCTCCT
TTGACGAGAGATATTTTCCTTGTTGTCTTTTGACGAGGGTAAACTAATAT
TTTCTTTGTTGACAATGATACTTCTTGAAAACAGTAATAATGGAATTTGG
AACCTGGGGTCATTAACCGATGGatcaaatcgaacaattttatTGTCATC
GAGTCCGTAAACTTGATGatctttcaaaagatttcaacgacatATCATTG
ACTGGACTGTCATTATCTCATAGCAACATAGCCGTTGAAATCATTCAACA
TCATCTGCAAAGAAGACTTGCTACCCTTGCTAAAAACCACGAAACTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_440:457255..458053

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065640 ID=TCONS_00065640|Name=TCONS_00065640|organism=Clytia hemisphaerica|type=transcript|length=799bp|location=Sequence derived from alignment at scaffold_440:457255..458053 (Clytia hemisphaerica)
GTTAGTTTCGTGGTTTTTAGCAAGGGTAGCAAGTCTTCTTTGCAGATGAT
GTTGAATGATTTCAACGGCTATGTTGCTATGAGATAATGACAGTCCAGTC
AATGATatgtcgttgaaatcttttgaaagatCATCAAGTTTACGGACTCG
ATGACAataaaattgttcgatttgatCCATCGGTTAATGACCCCAGGTTC
CAAATTCCATTATTACTGTTTTCAAGAAGTATCATTGTCAACAAAGAAAA
TATTAGTTTACCCTCGTCAAAAGACAACAAGGAAAATATCTCTCGTCAAA
GGAGGAGAACAAATAATAGACAGCAATAATTGAGATGATTGAGTAATGAC
TTGTAATCCAAGGCAACCTCGTGATAAAAAAACTAATGTGATTTTTCTTG
TTAAATGCTTGTTCAAATAACAAAGAGGGGTATCTTCCTATCACTTGGTA
TAACATTACAGATAGAGAAGTTTTTTGTCACTGTTGAACTTTGATTCAGT
GTGATCACAAGATTTGATCATTCAAGAATTTAAAATTCTAAACTTCTGGT
AAGTTACCACTCTCTTTTGTTCCTTTCTCTAAGGACAACTTTTTCAGCTC
GATTGCATTTAATACACATACAATGTATTGTGAAAGCAAGTGGGCGTGGc
agattttcactttttaaatttctgtcTTATATGGTTTCCACCCTACCCAA
ATTTCCCATTTTTGTTAGATATCAAGTGTTGGATAAGGTGTAAAGGCGCA
TTAACTTAACCGAACGGCTATTTTTGGAGTTTAGTACGAAGTATGGGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041128XLOC_041128Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065640-exon-scaffold_440-1491911889:457255..458053TCONS_00065640-exon-scaffold_440-1491911889:457255..458053Clytia hemisphaericaexon
TCONS_00065640-exon-scaffold_440-1510915933:457255..458053TCONS_00065640-exon-scaffold_440-1510915933:457255..458053Clytia hemisphaericaexon
TCONS_00065640-exon-scaffold_440-1575043694:457255..458053TCONS_00065640-exon-scaffold_440-1575043694:457255..458053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:457255..458053 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.3575	38.8183	31.7954	26.5107	0.324364	0.256317	1.08232	1.08563	14.9989	17.5115	16.327	8.97062	6.51866	4.40237	12.8726	14.7303	2.30218	2.17458	6.39214	5.01669	0.813943	1.27611	10.135	7.77255	0	0.057619	1.48415	1.14394	3.87101	5.37193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065640 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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