TCONS_00065638 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065638
Unique NameTCONS_00065638
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length647

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065638 ID=TCONS_00065638|Name=TCONS_00065638|organism=Clytia hemisphaerica|type=transcript|length=647bp
GTAAGGAAAGATAATCGAGATAGAAacagaaatgaaaaaatctcAATACT
CTTCAAGAAGACTTTAGAAACACTGTGTTCAAATTGTCGAGAATCATTTA
AAATCTTAGCGAAAACAATAAACATATATTTCAATTGCTCGACTTGAGCT
GTAAAAAAACTGTTAATATTTATTGGTGGGTGGTATCATTGCCGGCAATG
AGGCACATTCTGATATTCGTATTTTTGACAATCATCATTACACTCAAGAT
ACATGGTATAGACACGAGAAGTCATCATCCTTCATTGAACAAAAGAAGCA
TTTTAAAGAAAGCTGGTATATCTTGCAAAGAAGAAGCCAAGATAAAATGT
GCTGGTCGAAAGACACCGGCGGAGTTCATAAGATGTTGGAAAGGAAAGGT
CAAAAATTGTAGACCAAAGCTACCAGTCTTTGCTTCTCGAATTATGCCTG
TTTGTAATATAGTCCAagttgaaaaagaagaatatttatattttgaagGA
CAATACTATAAGGTTTTGTATAAAGTACCTGTCCTTGTTTGCTTATAATC
ATGCATGAACTTAAAATATAACATCACTCAAAATTGTATCAAAATTCATA
AGTTTCTGGATCATCTTCCAGGTTTTGAAATATATAAGCCTACCAAC
Run BLAST on NCBI

protein sequence of TCONS_00065638-protein

>TCONS_00065638-protein ID=TCONS_00065638-protein|Name=TCONS_00065638-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MRHILIFVFLTIIITLKIHGIDTRSHHPSLNKRSILKKAGISCKEEAKIK
CAGRKTPAEFIRCWKGKVKNCRPKLPVFASRIMPVCNIVQVEKEEYLYFE
GQYYKVLYKVPVLVCL
Run BLAST on NCBI

transcript from alignment at scaffold_440:380239..380885

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065638 ID=TCONS_00065638|Name=TCONS_00065638|organism=Clytia hemisphaerica|type=transcript|length=647bp|location=Sequence derived from alignment at scaffold_440:380239..380885 (Clytia hemisphaerica)
GTTGGTAGGCTTATATATTTCAAAACCTGGAAGATGATCCAGAAACTTAT
GAATTTTGATACAATTTTGAGTGATGTTATATTTTAAGTTCATGCATGAT
TATAAGCAAACAAGGACAGGTACTTTATACAAAACCTTATAGTATTGTCc
ttcaaaatataaatattcttctttttcaactTGGACTATATTACAAACAG
GCATAATTCGAGAAGCAAAGACTGGTAGCTTTGGTCTACAATTTTTGACC
TTTCCTTTCCAACATCTTATGAACTCCGCCGGTGTCTTTCGACCAGCACA
TTTTATCTTGGCTTCTTCTTTGCAAGATATACCAGCTTTCTTTAAAATGC
TTCTTTTGTTCAATGAAGGATGATGACTTCTCGTGTCTATACCATGTATC
TTGAGTGTAATGATGATTGTCAAAAATACGAATATCAGAATGTGCCTCAT
TGCCGGCAATGATACCACCCACCAATAAATATTAACAGTTTTTTTACAGC
TCAAGTCGAGCAATTGAAATATATGTTTATTGTTTTCGCTAAGATTTTAA
ATGATTCTCGACAATTTGAACACAGTGTTTCTAAAGTCTTCTTGAAGAGT
ATTgagattttttcatttctgtTTCTATCTCGATTATCTTTCCTTAC

Coding sequence (CDS) from alignment at scaffold_440:380239..380885

>TCONS_00065638 ID=TCONS_00065638|Name=TCONS_00065638|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at scaffold_440:380239..380885 (Clytia hemisphaerica)
TTATAAGCAAACAAGGACAGGTACTTTATACAAAACCTTATAGTATTGTC
cttcaaaatataaatattcttctttttcaactTGGACTATATTACAAACA
GGCATAATTCGAGAAGCAAAGACTGGTAGCTTTGGTCTACAATTTTTGAC
CTTTCCTTTCCAACATCTTATGAACTCCGCCGGTGTCTTTCGACCAGCAC
ATTTTATCTTGGCTTCTTCTTTGCAAGATATACCAGCTTTCTTTAAAATG
CTTCTTTTGTTCAATGAAGGATGATGACTTCTCGTGTCTATACCATGTAT
CTTGAGTGTAATGATGATTGTCAAAAATACGAATATCAGAATGTGCCTCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041126XLOC_041126Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065638-proteinTCONS_00065638-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065638-exon-scaffold_440-1491911889:380239..380885TCONS_00065638-exon-scaffold_440-1491911889:380239..380885Clytia hemisphaericaexon
TCONS_00065638-exon-scaffold_440-1510915933:380239..380885TCONS_00065638-exon-scaffold_440-1510915933:380239..380885Clytia hemisphaericaexon
TCONS_00065638-exon-scaffold_440-1575043694:380239..380885TCONS_00065638-exon-scaffold_440-1575043694:380239..380885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:380239..380885 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.183423	0.0897256	0.218464	0.0863168	13.1213	15.8622	42.4653	34.4003	13.6251	23.019	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065638 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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