TCONS_00065634 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065634
Unique NameTCONS_00065634
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length800

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065634 ID=TCONS_00065634|Name=TCONS_00065634|organism=Clytia hemisphaerica|type=transcript|length=800bp
TAATTGTATAAATTCATATATGATtcgaacacccccttctcatagacccg
ggaggattttttcagtcagtggaggtaaaaataacggaccaaagtTCGAC
GAGGAttgatattcaaatttctttttatggctggggatttgaattccctG
GATTAAGAtacagaaaattcagtggggatgaaaaataCCACAACATTTTT
CCGATGATGATTTGCTTATCAGATTATTGTCAGTGGGAGAccaaaattag
agtataatttccACTGGGGACAAAAATTAAGAGTTTAATTTTCCAAAGGG
AAGGAGTCCCAGTGGGTTCCCAGTGAGAAGGGGAATATattgttttacaa
aaaaaaactgtGCTTTCAAATAATGCAATCAGATAtaataataaagtttt
tttatgcATGGATCCCACTTTTTTGCAGACCATGCCATACTGTTTCAaaa
gttactattttaagccataaaaactattattcttttaagttttaaggtgt
tttgagggtgtaaaaattaaaaaattacctCGTCGCCCAACCAAAatatt
gccccccccccaactCAAAATGACTCACCGGGGCCCATGTTATGATTCGA
TTCGGAATTTAGCGATTATCGTAATGGTATAAGATAAAAATTGAGCtgca
aaatttcttaaaatatttacaaaataataaaatcatgaAAGTTCATGAAC
AagtttttcaataaatcaaGCAGTCGATAGATAGAATATAGTTAAAAAGG
ACCAGGGGTTTTTTTTCTAACCAATTTTAAGAATTATATTTCCAATGGTA
Run BLAST on NCBI

transcript from alignment at scaffold_440:204460..205259

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065634 ID=TCONS_00065634|Name=TCONS_00065634|organism=Clytia hemisphaerica|type=transcript|length=800bp|location=Sequence derived from alignment at scaffold_440:204460..205259 (Clytia hemisphaerica)
TACCATTGGAAATATAATTCTTAAAATTGGTTAGAAAAAAAACCCCTGGT
CCTTTTTAACTATATTCTATCTATCGACTGCttgatttattgaaaaactT
GTTCATGAACTTtcatgattttattattttgtaaatattttaagaaattt
tgcaGCTCAATTTTTATCTTATACCATTACGATAATCGCTAAATTCCGAA
TCGAATCATAACATGGGCCCCGGTGAGTCATTTTGagttggggggggggc
aatatTTTGGTTGGGCGACGaggtaattttttaatttttacaccctcaaa
acaccttaaaacttaaaagaataatagtttttatggcttaaaatagtaac
tttTGAAACAGTATGGCATGGTCTGCAAAAAAGTGGGATCCATgcataaa
aaaactttattattaTATCTGATTGCATTATTTGAAAGCacagttttttt
ttgtaaaacaatATATTCCCCTTCTCACTGGGAACCCACTGGGACTCCTT
CCCTTTGGAAAATTAAACTCTTAATTTTTGTCCCCAGTggaaattatact
ctaattttggTCTCCCACTGACAATAATCTGATAAGCAAATCATCATCGG
AAAAATGTTGTGGtatttttcatccccactgaattttctgtaTCTTAATC
CagggaattcaaatccccagccataaaaagaaatttgaatatcaaTCCTC
GTCGAactttggtccgttatttttacctccactgactgaaaaaatcctcc
cgggtctatgagaagggggtgttcgaATCATATATGAATTTATACAATTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041122XLOC_041122Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065634-exon-scaffold_440-1491911889:204460..205259TCONS_00065634-exon-scaffold_440-1491911889:204460..205259Clytia hemisphaericaexon
TCONS_00065634-exon-scaffold_440-1510915933:204460..205259TCONS_00065634-exon-scaffold_440-1510915933:204460..205259Clytia hemisphaericaexon
TCONS_00065634-exon-scaffold_440-1575043694:204460..205259TCONS_00065634-exon-scaffold_440-1575043694:204460..205259Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:204460..205259 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.531977	0	0	0	0	0	0.0626591	0	0.0399797	0.558937	0.456077	0.034087	0	0	0.0461895	6.12607	1.9365	0.0580404	0	0.0688292	0	0.128903	0.575215	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065634 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top