TCONS_00065628 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065628
Unique NameTCONS_00065628
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065628 ID=TCONS_00065628|Name=TCONS_00065628|organism=Clytia hemisphaerica|type=transcript|length=365bp
NNCGAACCGACCCTCCAAAAGGGTAGTTCTTTAGAAGATTTCGCCCGTCT
TAAAACGTCAAATCAAACAAGTGTGCTTACATatatttttaatacaaaat
atttaTGACTGGATTAAAACTAGCCAATAAAAAactctcattttcaaaaa
gacagAAAGATACTAGCACCGAACCGACCCTCCAAAAGGGTAGTTCTTTA
GAAGATTTCGCCCGTCTTAAAACGTCAAATCAAACAAGTATGCtttcata
tatttttcaatacaaaatatGTATGACTGGATTAAAACTTGCCAATAAAA
AactctcattttcaaaaagacagAAAGATACTAGCACCGAACCGACCCTC
CAAAAGGGTAGTTCT
Run BLAST on NCBI

transcript from alignment at scaffold_440:121471..121835

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065628 ID=TCONS_00065628|Name=TCONS_00065628|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_440:121471..121835 (Clytia hemisphaerica)
AGAACTACCCTTTTGGAGGGTCGGTTCGGTGCTAGTATCTTTctgtcttt
ttgaaaatgagagtTTTTTATTGGCAAGTTTTAATCCAGTCATACatatt
ttgtattgaaaaatatatgaaaGCATACTTGTTTGATTTGACGTTTTAAG
ACGGGCGAAATCTTCTAAAGAACTACCCTTTTGGAGGGTCGGTTCGGTGC
TAGTATCTTTctgtctttttgaaaatgagagtTTTTTATTGGCTAGTTTT
AATCCAGTCAtaaatattttgtattaaaaatatATGTAAGCACACTTGTT
TGATTTGACGTTTTAAGACGGGCGAAATCTTCTAAAGAACTACCCTTTTG
GAGGGTCGGTTCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041116XLOC_041116Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065628-exon-scaffold_440-1491911889:121471..121835TCONS_00065628-exon-scaffold_440-1491911889:121471..121835Clytia hemisphaericaexon
TCONS_00065628-exon-scaffold_440-1510915933:121471..121835TCONS_00065628-exon-scaffold_440-1510915933:121471..121835Clytia hemisphaericaexon
TCONS_00065628-exon-scaffold_440-1575043694:121471..121835TCONS_00065628-exon-scaffold_440-1575043694:121471..121835Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:121471..121835 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.498673	0	0	95.0038	56.3372	22.0535	23.2609	9.63599	9.95679	3.71733	7.13545	1.12517	1.12921	0.323352	0.00244019	1.02407	0.22033	0	0.252978	0.235641	0.846547	0.439374	0	3.51482	1.12263	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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