TCONS_00065623 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065623
Unique NameTCONS_00065623
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length255

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065623 ID=TCONS_00065623|Name=TCONS_00065623|organism=Clytia hemisphaerica|type=transcript|length=255bp
GCAGTACAAGAAATATTTGCTTTGGAATACAAACTCTTATATGGACAATA
CCTCTGGAACAAGTTAATGCTTGGTTCTTACATTCATGAGGTCAGAGCAT
GCAGAAGTTTTGTGgattttataaacttttgaaacttgtgtgattgtttt
gctTGTTTTCCTGACGAGATACTGTGAACTTgtatttgataaacattgca
tttTGGCTTGGAGtatgttttttgatgttttaacgGCAACATCATTTCTT
GTTTN
Run BLAST on NCBI

transcript from alignment at scaffold_440:81007..81261

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065623 ID=TCONS_00065623|Name=TCONS_00065623|organism=Clytia hemisphaerica|type=transcript|length=255bp|location=Sequence derived from alignment at scaffold_440:81007..81261 (Clytia hemisphaerica)
NAAACAAGAAATGATGTTGCcgttaaaacatcaaaaaacataCTCCAAGC
CAaaatgcaatgtttatcaaatacAAGTTCACAGTATCTCGTCAGGAAAA
CAagcaaaacaatcacacaagtttcaaaagtttataaaatcCACAAAACT
TCTGCATGCTCTGACCTCATGAATGTAAGAACCAAGCATTAACTTGTTCC
AGAGGTATTGTCCATATAAGAGTTTGTATTCCAAAGCAAATATTTCTTGT
ACTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041111XLOC_041111Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065623-exon-scaffold_440-1491911889:81007..81261TCONS_00065623-exon-scaffold_440-1491911889:81007..81261Clytia hemisphaericaexon
TCONS_00065623-exon-scaffold_440-1510915933:81007..81261TCONS_00065623-exon-scaffold_440-1510915933:81007..81261Clytia hemisphaericaexon
TCONS_00065623-exon-scaffold_440-1575043694:81007..81261TCONS_00065623-exon-scaffold_440-1575043694:81007..81261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:81007..81261 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.45648	3.66884	1.23079	1.78405	17.5465	4.64261	13.2486	11.3481	8.35074	3.24645	2.94422	5.32204	8.37883	2.06727	14.7776	7.12152	2.31813	18.8529	6.66268	10.9589	15.1266	17.4656	17.4626	12.037	0	8.99354	10.9503	9.4712	6.29111	3.46309
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065623 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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