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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065618 ID=TCONS_00065618|Name=TCONS_00065618|organism=Clytia hemisphaerica|type=transcript|length=4199bpRun BLAST on NCBI transcript from alignment at scaffold_440:578677..606266- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065618 ID=TCONS_00065618|Name=TCONS_00065618|organism=Clytia hemisphaerica|type=transcript|length=27590bp|location=Sequence derived from alignment at scaffold_440:578677..606266- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065618 vs. Swiss-Prot (Human)
Match: DHB4 (Peroxisomal multifunctional enzyme type 2 OS=Homo sapiens GN=HSD17B4 PE=1 SV=3) HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0 Identity = 347/747 (46.45%), Postives = 473/747 (63.32%), Query Frame = 3
Query: 225 TKLAFTGRVAVITGAGGGLGREYALEFARRGASVVVNDLGGNFKGQGKSANLADKVVKEIQDEGGQAVANYDSVEEGEKIIDTAIQNYGKVDIVINNAGILRDRSFLNMKDEDWDKVFQVHVKGAFKVTKAAWPHMRKQRYGRIIMTTSPAGLYGNFGQSNYSAAKMALLGLCNTLSIEGKGRNIFVNTIAPLAMTRMTLDVFPEG--TDLQPQHICPFVIYLCHEDCQETGSLVEAAGGFACKTRLQRSQGMQLRQFVADNP-TVESVAENWSRLSDFSVSTPVDDNQAGAAHIMEQIRDIPAS-PLPANATALERMQA---------HRIPDLHFAYTSGDVIRYALSIGAGL--PDDLPFIYEGHSDFCVIPTFASVMGQDSVF-KDIVGVPGFDQIDLSRAVHGEQYIELMKPIPSSGEFTTRTRVVDCLDKRKFTQVIIESEVMDSNNDVVCKNQFVVLFLGSGGIGRRGKSDVQVSALPPPRRAPDAVCEEKTGTNQAAYYRLNGDPNPLHIDQDIASMVGFKEPILHGLCTYGYGLRHILKTYVKHDVSLFKSIKGQFSKPVIPGQTLVTEMWCEGSRVHFQVKVKENGNVVIKGGYVDFHKDXXXXXXXXXXXXXXXXXXQPNSTGASNLKSDQFFTELKSVLSS-APDLAKSMNAAYLFQITVDKKIEAEYLLDFKQSPPVVSNQGGKG--DVTIKVSDDDFVKLADGKLNPMQAFMQGKIKVSGQIALAQKLDTVFK 2408
+ L F GRV ++TGAG GLGR YAL FA RGA VVVNDLGG+FKG GK + ADKVV+EI+ GG+AVANYDSVEEGEK++ TA+ +G++D+V+NNAGILRDRSF + DEDWD + +VH++G+F+VT+AAW HM+KQ+YGRIIMT+S +G+YGNFGQ+NYSAAK+ LLGL N+L+IEG+ NI NTIAP A +RMT V PE L+P+++ P V++LCHE C+E G L E G+ K R +R+ G +RQ ++P T E+V NW ++ DF ++ Q I+E + I + + AN T+ A ++P +AYT + I YAL +GA + P DL FIYEG SDF +PTF ++GQ S+ + +PG I+ ++ +HGEQY+EL KP+P +G+ V D LDK VII S +++C NQF + +GSGG G + SD A+ P R PDAV + T NQAA YRL+GD NPLHID + AS+ GF +PILHGLCT+G+ R +L+ + +DVS FK+IK +F+KPV PGQTL TEMW EG+R+HFQ KV+E G++VI YVD S P+ G L+S F E+ L P++ K +NA + + IT I A++ +D K V KG D TI +SD+DF+++ GKL+P +AF G++K G I L+QKL + K
Sbjct: 3 SPLRFDGRVVLVTGAGAGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSLAADKVVEEIRRRGGKAVANYDSVEEGEKVVKTALDAFGRIDVVVNNAGILRDRSFARISDEDWDIIHRVHLRGSFQVTRAAWEHMKKQKYGRIIMTSSASGIYGNFGQANYSAAKLGLLGLANSLAIEGRKSNIHCNTIAPNAGSRMTQTVMPEDLVEALKPEYVAPLVLWLCHESCEENGGLFEVGAGWIGKLRWERTLGAIVRQ--KNHPMTPEAVKANWKKICDFENASKPQSIQESTGSIIEVLSKIDSEGGVSANHTSRATSTATSGFAGAIGQKLPPFSYAYTELEAIMYALGVGASIKDPKDLKFIYEGSSDFSCLPTFGVIIGQKSMMGGGLAEIPGL-SINFAKVLHGEQYLELYKPLPRAGKLKCEAVVADVLDKGSGV-VIIMDVYSYSEKELICHNQFSLFLVGSGGFGGKRTSDKVKVAVAIPNRPPDAVLTDTTSLNQAALYRLSGDWNPLHIDPNFASLAGFDKPILHGLCTFGFSARRVLQQFADNDVSRFKAIKARFAKPVYPGQTLQTEMWKEGNRIHFQTKVQETGDIVISNAYVDL------------APTSGTSAKTPSEGG--KLQSTFVFEEIGRRLKDIGPEVVKKVNAVFEWHITKGGNIGAKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDFMEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILK 731 The following BLAST results are available for this feature:
BLAST of TCONS_00065618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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