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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065607 ID=TCONS_00065607|Name=TCONS_00065607|organism=Clytia hemisphaerica|type=transcript|length=1658bpRun BLAST on NCBI protein sequence of TCONS_00065607-protein >TCONS_00065607-protein ID=TCONS_00065607-protein|Name=TCONS_00065607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp MSQSPLSTTQQITSEFHSPSIAERTAIFSGLFDTSRIWIFGCALFLIIYGRun BLAST on NCBI transcript from alignment at scaffold_440:322743..335617- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065607 ID=TCONS_00065607|Name=TCONS_00065607|organism=Clytia hemisphaerica|type=transcript|length=12875bp|location=Sequence derived from alignment at scaffold_440:322743..335617- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_440:322743..335617- >TCONS_00065607 ID=TCONS_00065607|Name=TCONS_00065607|organism=Clytia hemisphaerica|type=CDS|length=13824bp|location=Sequence derived from alignment at scaffold_440:322743..335617- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065607 vs. Swiss-Prot (Human)
Match: SPPL3 (Signal peptide peptidase-like 3 OS=Homo sapiens GN=SPPL3 PE=1 SV=1) HSP 1 Score: 241.121 bits (614), Expect = 4.971e-73 Identity = 169/389 (43.44%), Postives = 244/389 (62.72%), Query Frame = 2
Query: 188 IAERTAIFS-GLFDTSRIWIFGCALFLIIYGSKRSLSVDSLFTDSKDEKNKEGK------------GSHTIELSHAIFLPIGASLSLLTMXXXXXXXXXXXXIXXXXXXXXXXXXXXXQVCEKCFNFCNIDGNSKISSRCCNDYTRNECLSLLVSTIIVSVWIFTGHWILMDAIGCALCVTMLSYIRLPNXXXXXXXXXXXXXXXXFWVFLSEYIFNDNVMLRVATRPAYNPMNYVAKKLNIHEKV--PVPKNLSLPGKLMFPSSRYPNRFGMLGLGDIVLPGLLISFILRFEKSTTKLKSSQGAMTG------------YYNMSVITYFIGLLIATTMSEMFQAAQPALLYLVPCILIPLIIQAYRKGDLSAMWNYDAGENSKEEQLI 1273
+AE+T ++ L D+S++ F ++ LI+YGS RSL++D F + EK+ G ++ + A FLP+GA +SLL MF FF+ Q F I T VL+ ++F+FLLL +C+ C+ +KIS CC +T E LS +S ++V +W+ TGHW+LMDA+ LCV M++++RLP+LKV+ LLL GLL+YDVFWVF S YIFN NVM++VAT+PA NP++ +++KL++ V VP+ LSLPGKL+FPSS + F MLG+GDIV+PGLL+ F+LR++ + G Y++ ++I YF+GLL AT S + +AAQPALLYLVP L+PL+ AY KGDL MW+ S + +
Sbjct: 1 MAEQTYSWAYSLVDSSQVSTFLISILLIVYGSFRSLNMD--FENQDKEKDSNSSSGSFNGEQEPIIGFQPMDSTRARFLPMGACVSLLVMFFFFDSVQVVFTICTAVLATIAFAFLLLPMCQYLTRPCS--PQNKISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAMIAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHLGPNVGRDVPR-LSLPGKLVFPSST-GSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTLLPLLTMAYLKGDLRRMWSEPFHSKSSSSRFL 383 The following BLAST results are available for this feature:
BLAST of TCONS_00065607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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