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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065579 ID=TCONS_00065579|Name=TCONS_00065579|organism=Clytia hemisphaerica|type=transcript|length=2011bp
ATTAATTATCATGCATGGTAATAACTCTTGTATGACACTCGTTAACTTCC
GATTTCGCGCACTTTTACGtttaacaaatatttctatGCACACTTTTGAA
CGATATGCATAACCTATTTTTGTACGCACATAAAGATAGGAACGTTTTCA
CACCCGCGCACGCACATAATGACACGAACCCTTTGCACCTACACATTAGC
TGGCAAgctaatttgataaaaaaggtaaattttaaaagaatttaaacTTT
AAAAGGTTATAGCCAAACATTCCATCATAGTTTTGCAATGTCTTCTTGAG
ACCACTATAAAGAAATTAGCTTGCCAACCACTCCCAGTCACATCGTCTTG
TGTTAAATTCTTTCGACTGCAAACGACGTGTCAACCCAAACTCAACGCAA
CCGAGAAAAACTGAAACCAGCAACAACTAACATTATAACCGACATGCGCG
AAATCGGACGGAGAGAAAAAATATTCCTATATTGGTAAGATTCATTTTcc
ttctgtttttctttttcataaaaagtcaCAGGCAACTCAATTGTGTCTCC
TTCGGATTTACCAAAGGCTATTAATCgctgtgatgacgtcatcaacgaGC
ACGAGGAGTCTGGCGGCGACATTGCCGGCCAAGAAGATTTCGAGCTCGTC
CAACGTTTGTTATCGCAAGAACAAAAGGCGGACTTACATCTTGCGCTTAA
GCGCTCTATCTCAACGCCCCTTGGGGACTCGGTAACGCCCACGACGGAGA
GGGCGCCTTTGGAACGTTACCATTCAACGGCAGTTACTTCGCCACGTGAA
CACCCGATACGGAGAGCAGATTCTGTAGAAGACATTGCTACGGGGGAGGA
CGAAAATAAAGAGTTGGCACGCCAGCTAATCTCTTTGAAAAAcgaaattc
ttttatttaaaactaaaaacatAGAATTGAATAAATCATTAGAGAGATCG
AACACGTTATTACGGGAAGAACGAAAACGTAGACTTTCGGAACGTAGCCC
GGCCACGACGCCCGTCAAAGAATATACGAACGTCGAAGTTGATGTTCAGC
AACAGCAACAAGAACTACCTTTGAATACCATCACTGAGCTACCCGATATG
GGTGAACGTGCTGACTATGTACCGACGCGCCGGCTAAGCGGCGAACGTCG
TCGGTCGGCCGAATTTAAACTTTCGGAAGAGCTTTTAACGAGACCACGTT
TGTCGTCGGGATCGTTTATTTCCGAGGACGAGGTGGCAAATCGTCGGAAA
TTATACGGACAACGGAAATCGTCAATGTCGTTAGACGAAATGTATAATTT
ATTCGGCGTGACGGAGAAAAATAATATGGAAACAAAAGTCTTACCGATGT
GAATTTCTTCCGTCTCTCGTTTTTTGTTGTTGGATTGATAAATTGGTTGT
TTATTATCTCGTACAATTAGCCTTTTACCCACAttgtaaaaataaaagat
tttttgtagtATATTTTCTAAACTAGGGACTTTTTTATTAGATTTGTCAC
TACTGGTTTTACATAGTTTTTGGAAAGCAAATTGATTAGGATGATGTGTT
TTTCATTCATAAATCGCCGATTCCTTAACTATTGTCGaaatatacacctt
ttcgaccatagccgccaattgctgcgcgggcatttttttgtccgttttac
caccctaaaaccgtcccagtctttttttcgcgtccaacagaaaaaagtgt
aaaaaaaggattggatcgagtttagttgGTTAAAAGTGGCACGCACCTGA
CCGCgcaactacggtcgaaaaggcgAATTTTGGTACGGAATAACCTTGCT
TGTTCTGCTTAAGTTGATTGATCTTGTCTATCTCGTGATACTAAATGGGT
TTTACATTGGCGGTGTTAGCTTTCTACCTAAAAACCTCAAAtttagaaat
gtttttttttgcatgtgTTTCATGTTGTCTTTTATTGTTGAAAAGGgaat
attttataaataatacttttttgtctCCTTTGTAAATAAAAGAATACTTT
TGTTATTAAAA Run BLAST on NCBI transcript from alignment at scaffold_440:437546..439556+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065579 ID=TCONS_00065579|Name=TCONS_00065579|organism=Clytia hemisphaerica|type=transcript|length=2011bp|location=Sequence derived from alignment at scaffold_440:437546..439556+ (Clytia hemisphaerica)
ATTAATTATCATGCATGGTAATAACTCTTGTATGACACTCGTTAACTTCC
GATTTCGCGCACTTTTACGtttaacaaatatttctatGCACACTTTTGAA
CGATATGCATAACCTATTTTTGTACGCACATAAAGATAGGAACGTTTTCA
CACCCGCGCACGCACATAATGACACGAACCCTTTGCACCTACACATTAGC
TGGCAAgctaatttgataaaaaaggtaaattttaaaagaatttaaacTTT
AAAAGGTTATAGCCAAACATTCCATCATAGTTTTGCAATGTCTTCTTGAG
ACCACTATAAAGAAATTAGCTTGCCAACCACTCCCAGTCACATCGTCTTG
TGTTAAATTCTTTCGACTGCAAACGACGTGTCAACCCAAACTCAACGCAA
CCGAGAAAAACTGAAACCAGCAACAACTAACATTATAACCGACATGCGCG
AAATCGGACGGAGAGAAAAAATATTCCTATATTGGTAAGATTCATTTTcc
ttctgtttttctttttcataaaaagtcaCAGGCAACTCAATTGTGTCTCC
TTCGGATTTACCAAAGGCTATTAATCgctgtgatgacgtcatcaacgaGC
ACGAGGAGTCTGGCGGCGACATTGCCGGCCAAGAAGATTTCGAGCTCGTC
CAACGTTTGTTATCGCAAGAACAAAAGGCGGACTTACATCTTGCGCTTAA
GCGCTCTATCTCAACGCCCCTTGGGGACTCGGTAACGCCCACGACGGAGA
GGGCGCCTTTGGAACGTTACCATTCAACGGCAGTTACTTCGCCACGTGAA
CACCCGATACGGAGAGCAGATTCTGTAGAAGACATTGCTACGGGGGAGGA
CGAAAATAAAGAGTTGGCACGCCAGCTAATCTCTTTGAAAAAcgaaattc
ttttatttaaaactaaaaacatAGAATTGAATAAATCATTAGAGAGATCG
AACACGTTATTACGGGAAGAACGAAAACGTAGACTTTCGGAACGTAGCCC
GGCCACGACGCCCGTCAAAGAATATACGAACGTCGAAGTTGATGTTCAGC
AACAGCAACAAGAACTACCTTTGAATACCATCACTGAGCTACCCGATATG
GGTGAACGTGCTGACTATGTACCGACGCGCCGGCTAAGCGGCGAACGTCG
TCGGTCGGCCGAATTTAAACTTTCGGAAGAGCTTTTAACGAGACCACGTT
TGTCGTCGGGATCGTTTATTTCCGAGGACGAGGTGGCAAATCGTCGGAAA
TTATACGGACAACGGAAATCGTCAATGTCGTTAGACGAAATGTATAATTT
ATTCGGCGTGACGGAGAAAAATAATATGGAAACAAAAGTCTTACCGATGT
GAATTTCTTCCGTCTCTCGTTTTTTGTTGTTGGATTGATAAATTGGTTGT
TTATTATCTCGTACAATTAGCCTTTTACCCACAttgtaaaaataaaagat
tttttgtagtATATTTTCTAAACTAGGGACTTTTTTATTAGATTTGTCAC
TACTGGTTTTACATAGTTTTTGGAAAGCAAATTGATTAGGATGATGTGTT
TTTCATTCATAAATCGCCGATTCCTTAACTATTGTCGaaatatacacctt
ttcgaccatagccgccaattgctgcgcgggcatttttttgtccgttttac
caccctaaaaccgtcccagtctttttttcgcgtccaacagaaaaaagtgt
aaaaaaaggattggatcgagtttagttgGTTAAAAGTGGCACGCACCTGA
CCGCgcaactacggtcgaaaaggcgAATTTTGGTACGGAATAACCTTGCT
TGTTCTGCTTAAGTTGATTGATCTTGTCTATCTCGTGATACTAAATGGGT
TTTACATTGGCGGTGTTAGCTTTCTACCTAAAAACCTCAAAtttagaaat
gtttttttttgcatgtgTTTCATGTTGTCTTTTATTGTTGAAAAGGgaat
attttataaataatacttttttgtctCCTTTGTAAATAAAAGAATACTTT
TGTTATTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065579-exon-scaffold_440-1491911889:437546..439556 | TCONS_00065579-exon-scaffold_440-1491911889:437546..439556 | Clytia hemisphaerica | exon |
| TCONS_00065579-exon-scaffold_440-1510915933:437546..439556 | TCONS_00065579-exon-scaffold_440-1510915933:437546..439556 | Clytia hemisphaerica | exon |
| TCONS_00065579-exon-scaffold_440-1575043694:437546..439556 | TCONS_00065579-exon-scaffold_440-1575043694:437546..439556 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_440 | supercontig | scaffold_440:437546..439556 + |
Blast
The following BLAST results are available for this feature:
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