TCONS_00065556 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065556
Unique NameTCONS_00065556
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065556 ID=TCONS_00065556|Name=TCONS_00065556|organism=Clytia hemisphaerica|type=transcript|length=652bp
TCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGATGAA
GAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGGTGTC
GGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAGTTTGT
AAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGTCACAG
TGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTGGGAAT
ACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGTATGGC
TGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGTCGAGA
TGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTCTCAAT
TTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAATAAGA
CAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATTTGCAG
AGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGATACAG
ACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGAAGTTC
AATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAATGTCG
TC
Run BLAST on NCBI

protein sequence of TCONS_00065556-protein

>TCONS_00065556-protein ID=TCONS_00065556-protein|Name=TCONS_00065556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
SGSCRDLMSTKRCEQMKKRRFCEIYPKEMKKRCRRTCQFCCADSSSASVC
KTLSKFSQRVRERTCHSEKFYPILKKSCPKTWEYCGKAPSEPPCVRSKYG
CCWEGTIAKDHVGTSRDGCPECKDRSGKEFCSQFRVHCNDKFSRSGRQIR
QLCPRTCRRCGPHQICRDEPTLLDSCLQMKHDTDSSGSKPCVDNFHVMKF
NCPKTCKICKVSTIECR
Run BLAST on NCBI

transcript from alignment at scaffold_440:252147..263581+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065556 ID=TCONS_00065556|Name=TCONS_00065556|organism=Clytia hemisphaerica|type=transcript|length=11435bp|location=Sequence derived from alignment at scaffold_440:252147..263581+ (Clytia hemisphaerica)
TCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGATGAA
GAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGGTGTC
GGAGAACTTGCCAATTTTGTTGTAAGTCTACCTAACGTCTATCTAGCATC
CATTTAAAATCCATCTAAAGTTGGTACTCGTTCTTACCATCACATGTGGA
AACCATTCTTGAGGTCGGCTTGTGAGTGAGTTAGTCTTATTACGTATTTC
CCACATGGAAAAAAGAGAGCGCCTAAAACTAAGATTTTTGGAACATTGTA
TTTTAGAGCATTTAGAGTCTAAATATTCTTTCGAAAAACATCTAAATAAT
AAAGAGAGAATCTTTACAAATAATTAACCAGAGAGAGTTAtgatgatatg
agccctccccatTGGGGAATGGGTTTTACTCCTTACGAAGTAAGAATTCC
TCCTTCTTCAAGTCTGAATGCTTAGCGCTGTCAAGAAACCACTCGTTCTG
TGCACGCGAGACACGNCTCTACAAATAATTAACCAGAGAGCGTTGTGATG
ATTGGGGAATGGGTTTTACTCCTTACGAAGTAGGAATTCTTTCTTCTTCA
AGTCTGAACGCTTAGTGCTGTCCAGACACCACTGGTTCTGTGCACGCGAG
ACACGGATACCATGGTGCATAGTGATAAAACTCGAAACCAGAGAGAATCT
TTACAAATAATTAACCATATTTTCTTCTTCGTAGGTGCTGACTCATCGAG
TGCTTCAGTTTGTAAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAAC
GGACGTGTCACAGTGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCG
AAAACGTGGGAATACTGTGGAAGTAAGTTACTACAGTAGTGTCTTTAACG
AGGCCTcccaagcggtttgcgtgatgacgTGATTGGAACTTTTTTGTAAC
GTGAtcacgtgatttggaaatttctttttcctgattgcgcgatgagaggt
caaaacgtgatcgtgattttaaattttttgagccGGGATGAAAGGGATGc
atgattttccaattttttttgcttggggGAAGTGGACTCTTTAAAACTCG
ACCTCTACATATTACTTGAGTGTCTCTTTATTCAAACGCAAGTTTAATgg
ttccttcagttaacaatgtctcTTAAACCAATCTCaataaatcgaaattt
ccttagTTCGAAAGAACTTCTGTTCCCCATACGTATTCGAGATACTATAA
CACAACAATATTAGCTATCTATTAAATGGCATATAACGGCATATTTTATG
CTCAAATTAATCTAACATCATTTGTCCAATCTCaataaatcgaaatttcc
ttagTTCGAACGAACTTCTGTTCCCCATACGTATTCGAGATACTATAACA
CAACAATATTAGCTATCTATTAAATGGCATATAACGGCACATTTTATGCT
CAAACTAATCTAACATTATTTGTCCATGCATTGCTGGCAAATAAGGTTGT
TCACGTATTATATTGCTTTATTTTGTAAGTAACGTGGTAGACAGGGCCAG
AAAGCAATGGGTTTATGTTTTTAAggggccccccccccagcggtttgcgt
gaatgcgtgaatgggcttttttggttNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNCGCCTcccttagtcactatgttttcggc
ccctccacgttaggaaatcaagacgcgagccctgattaaaactattcttt
ttaaaatttttgtttgctcgcAACAAAGGTTCATCCTTTTACCTCATTTT
GCAAACTATCAAGCAATCGTACNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNAtcgggtttgcgtgaatttcgagaaaaac
ttgcgtgaatgcgtgaattgcgaaaattttttgcgtgaatgcgtgaattt
agggtccgctggggggggcctctTTTAATAAAACCAGGgattaataataa
caataataataaaagtttacaaTCTAAACCCTACAAGGATTGGATTGGCC
ATAGAGCTTCAAAGAATACTTGACAACTTGCTTGTCTGTATTATTGGAAG
CCCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNGAAGCCCTATAGCAATCTCACACATTC
TCTGAAAtagattttttacaaaactgATCAATAGTTAAATTTCTATCTGA
TATGACTTGCTCCAAGAGCGTTTTTATTGGATGACCACGTTTTCTCCAAG
TGCCATCGTTAAACAGTGTCCACTTGTTTGAAGCCATTTCAAACCATGCG
TCTCAAAAAAGTTCTGTACGTCTAGCCTGTTCAATTGATTTGTGCTTAGA
TTCCAATTCTGACATGCATATATCAGGCGACTTCGTACAAAACAATCCAG
GAAAGAAACACGAGTTCGTAAGTTTACGTGAAAATTTTGCAGGAAATTTG
ATAATTCAGCAAATTTTACACAAGCTAATTGAATACGTTGATTTACTTCA
CTATCTCCTGTGCTGTGTTCTTTACAGTTTATATAGGCCCCGAGGTATCG
AAAGATGGTgacattttttaagttaaaaccTTTGAGGTTGACAATAGACG
GTGGTATGTCATCAGCGTTGAGGATCATCGTTTCAgtttttgtattattt
attgTAAGACCAAAATTTGAGAAGATTTTATCNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNTTTTTTCGTAAAGTTTTTCAAGAATGTC
AATTAAGATAGGATTTTGGGTATCCTTAAATCGAAGTCTGATTGAGTCGA
ACATCCATTTTCGTGGGATGTGGTCGAACGCAGTTGATAGGTCCACGAAT
ACCAGATAAAGGGGTTGCATTTTACGGTTAGAGATCTGTTGAATACGCTT
GATATTGTAGATCCCATCTGTCGTTCCTCGATTCTGTCGAAATCCGTTTT
GCTCATCGGTCAGTTGTGCCTCGTACCAAGGTTGGAGTTTGCTTAGGATA
ATGTTCACAATTAGTTTGCTTACTGTTGAGCCGATACTCAAGCCTCTGTA
CTTAGTAGGATCATTCTTAGAACCTTTGCCTTTCCATAAAGTTTCCAATC
TAGAGTTTCCCCATGCGGAGGGAATGTCGAGATTTTCCCATACATTTAGT
GNACCTTTGCCTTTCCATAAAGTTTTCAATCTAGAGTTTCCCCATGCAGA
GGGAATGTCGAGATTTTCCCATACATTTAGTCTCATTTTGCGAATAGCGT
CAAGAAGAGCTGGGCACTCACATTTCTTTAGAAGCTCAGAGTCAATATCA
TTGTTTGCTTTcttgtttttgagtttttgtaaatgctttgTGATCTCATC
GATGGTAGGAGGTTCAATATTGATATTGATTGTTGAAGAAATCTTACGAA
GTGACTCTACAAAACTAGGTAGATTGTCCAATTCGTCTGGTCTGACAGTG
TTTTCCTTTTCCGGGTTAAAATGCTGTTCAAAGTGGTTCAAAATTTTGTC
AGGGGGACACATAGAAGCTGTCGAAGTGTTCAAGGTAGTCGTCTGTCTTT
TCGCAGTAGCAAACAGTTTATCAAGTTCTCTCGTTGCAGCGAGAGTATTC
AGTTTTAATGCTTCTGTTTTGAAGTGTTCGTTTCTAAGTTGCCTCGATCT
TTTCCTGATCTTTTTGCGTAATTGTTGCAAAGGTTCATCATCAGCATTTC
TCTTAACAATTTCATCTTTTTTCGTGTATAGGTCTTTGAGATTTTCGTCA
ATTTGCCAAGGTTGGTGCAATTTCTGTTTTATGGTTTCAGGTAGTGTCTC
TGTAGCAGTGGTTTCAATCGTTTTGATGATCAAATCGTTTATTTCATCAT
TATCAAGATTattaatttgaatattttcccAAGAATTGTTGAACTTTGAG
ATCAAGGTTTCACGAACTTTTTCTACATCTAATAAATCATAGTTgagttt
tttgtgttttgttttaggTTTCCTTCTTTTAGCACGAGACAGCTTATTTC
CTGGACTTTTAATGTTGGCAATAACCTTCCGATGATCGCTATCAAAGTGA
AAACCCTGCAGTTTGTGCAAAATTGGCGTATCCAGGAACAGCAAAGGATG
AAGTCATAAACCTTTTTTGTTCGACCGTCCGCGGAATGCCATGTGATTCG
CCGACAACGTTTGTGGTTAAACCATGTGTTCAAGACTGATAATTGTTGAG
TTTGTATTAAATCGTGAAATCTTCCACCGTTATAATTATTAACAATCAGG
CTATCAATAATTATGTTTTCTCTGAGCGAAGAATTGTACCATGCTGCTGA
AGTTGTCGCGTTAAAATCTCCAAGACAAATGACCTTTTTTTGGTGGAACA
TTGACGAAGAATTGTTTGTGAAGATTTCTGTAAAACAAGTCTTTTGGACT
GTCACTACTCTCTTCTGTAGGTGCATAGCAATTAGTAACTTTAAGCAGAC
ATCCGTATACCTTAGTTTGAAGCACAATGATCCGAGCATCCACGTATTCA
ACTTGCACGATTTCGACATTAGGGTCTACTTTGATGACAAAACCAACTCC
ATGTTGTCTCTTAAGGGAGTGACCTGACCAATAGATTTCGTATTTCGAAT
TATCACATTTAACTGTAGCTGATCCTTGTTTGAGTCTTCTTACTTCTTGA
AGTGCAGAGATTTCTAAGTTGGCTTTATGGATCTCTTGCACAACACGTTC
GAGTTTGAGGTCGTCTTTGCAAGTTCTCACATTGATGGTTCCAATATTCC
ATTTGTAGAATGTCTGTTTCATGAGAAGGGTGATGAGATGTTCAACCGTA
TGTTTAAGGGCGTGACCGGTCAGTTCCTCGTCCCGAAACAAATCGAAACC
ACCACCACATCAGAATTTCAGCGTTGTTGTTCTTCTTGGGTGTGGTGGAC
CTCTCTTAGTTGTGTAGGATTACCACCACaccctttgttttagtttttga
ttCTATAAGAAGAACTTATGCTCAACTAAATAGAGGTGTTTATTTAGATT
TATACTAAATCCACTATTGTGTTGTGTGAAtgacttcaaatttttaaatc
aaattttttccctCTTAACAGAGGCACCATCAGAGCCACCTTGTGTGCGT
TCAAAGTATGGCTGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGG
GACAAGTCGAGATGGATGTCCAGGTAAATGTTCCACGCGTGCGCATTCAA
TCATCAGATATATTATTATATTTCCTGTTACAAATTATTAGCATTTTTTC
AACCTGCAATGATGTAAATTCGGGTTGGAAGATTAGGAAAGCAGAAAGCA
TAAATTTACGTAAGAGGCCTCTAAATCTTTTAAACATATTGACTTTCAGA
AGCAACACCTAGTAGTCAACCTCCTAGAATATTTTCTTCTGTTCCNGCCT
CTAAATATTGACTTTCAGAAGCAACATTCAACCTCCTAGAATATTTCCTT
CTGTTATTAGGACTCGACCTGAATGATATAGACCCTCAACCCTTCTGAAC
TTTGTGATGCTTGATAATATCTTCATGTTTGAAAGCTCCAGGTTATAGGA
CACTCCTTTCTCACAGACggaaaaaaatggccaaaatatcgtcttagtgg
aaattatactctaatttttgtccccactgaaaataatcacataagcaaat
cctcactgaaaaatattatgctattttttccattcctactgaattttctt
tctcgaaaacaatgaaactcAAATTCTCATCCatgaaaaaacatgggaat
ataaATCCAATCGGGTTTTGGTTCGTTATTTATACCCCCACTAGNCATCC
atgaaaaaacatgggaatataaATCCAATCGGGTTTTGGTTCGTTACTTA
TACCCCCACTAGCtcaaaaaatcccaccgggtctgtgagaagggggtgtt
atagAGAACTCACTAACTGTTATAGAGAATTGTGACATAAACCAATTAGT
CAGAGGGGCTGAAGTTAAGATATTAGAGCAACATTCTATTGCTGGAATTG
ATAGTTTGAGCCCTTAGGATAATTTTAAGCCAGAGTGCCATTTTTCTAAA
TCAGACACTAAATTAATCTCAATGTAACTTTCATTTCGATTGTTAAAAAT
AAACTCTTTCTAATATATTTCAGAATGTAAAGATCGCTCTGGAAAGGAAT
TCTGTTCTCAATTTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGA
AGACAAATAAGACAACTTTGCCCTAGAACATGCAGACGATGTGGACGTAA
GATCAGTTGATTCATTACTGTGATTATGCTATTGTCTAAGAAAAATCACT
TTCTCACAAATAGGCTCCAAGTCCTTGGTGGAGAAATTCGTAACTAGGTT
ATACTTAGTTTCCTCAGAAATCGACCGTGTGTGAATTGACTGTAACAATT
TTATTGAACGTCTCTCAATTactaattcttgaaaaatcaaagacaTATAA
CCATATACTATGATAGATATGGTAGGTTTTGCTGACAATGAAAGTTGATG
TCATTAAGAGGAAGGCGTTTCTTCTTAACTCTACAAAGAACGTTTTACTA
AATTTATTGGCCGTAAACTCTCCTAACCGTCTCAGGCTTTCAGTTGGTAT
AAAACATCAAAACGACATTTATCTCATGTCCATAACATCCATGAAAAGTT
ACagatgaacgttaaaataacgttgTATAATGTTGTGTTTgaaagttaaa
ggttttatttttacataagtgttcccgtttcatatcagacacatgtttca
gatcaggacagtgtctgcatattgttatattatgctgatacaaaccctaa
acccggggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNtatgattttcactgatttttgctgcactgtaagggtgca
attttaaaagccaatttttggcccgcacataccgtcagtccgcaaaccca
gtgcccccccccgggatataaacaaaaaaatctttctgaccaatcttgct
ctacACCCTgtcaatccaatatgaaaaatcttgtaaatcaaaattgatga
gtaagcaaacgctATCTATcactctttttttaaacaaaacctttaaactt
tcattttttattcattagcTCACCAAATTTGCAGAGACGAACCAACGCTT
TTAGATTCTTGTTTACAAATGAAGCATGATACAGACTCATCTGGTAGCAA
ACCGTGTGTTGATAATTTCCACGTCATGAAGTTCAATTGCCCTAAAACAT
GCAAAATCTGCAAAGTTTGTAAGTCATAAAGCTTTCcaagtccgaagggc
tagacttgagactcctggatgggcaACGAAACCacctatttcccatccag
aacgcctgcgcgttgtttttacacaaacgccgtattgaaattaaaattta
tcactagattaaaaaaatgcagtcctcaaaaacaaaggaaccactagata
caatcggtcgtcatgattgcggcgcgttttaggcgcgttctggataggaa
ataagtggcttcatttgaTTTTCTTACCTGGGAAAGGATAGAGATTCCAC
TCTAGCCTTccaggctttaaactcaatgattcAGGTCCCTGACCACTGTT
GTGGATATTGGTTTTTTAGTATATGCATCGAACTATTTGGATAGCAAAAC
TCTTACATCTGAGACATCTTATCTTAAGTGAAGATTCCATTTCTGGAATA
ATGAAGCGGCTATCGCGAAGAGTATATCCACCAGGCTAATATTTGTGTAT
ATAGAAGGAATTGTGTTGAAAGACACGTTCTGGAGTTCTCGGCTACAATA
TTATCTTTACTTTTAAGCAACGATCGAATGTCGTC

Coding sequence (CDS) from alignment at scaffold_440:252147..263581+

>TCONS_00065556 ID=TCONS_00065556|Name=TCONS_00065556|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at scaffold_440:252147..263581+ (Clytia hemisphaerica)
TCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGATGAA
GAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGGTGTC
GGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAGTTTGT
AAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGTCACAG
TGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTGGGAAT
ACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGTATGGC
TGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGTCGAGA
TGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTCTCAAT
TTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAATAAGA
CAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATTTGCAG
AGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGATACAG
ACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGAAGTTC
AATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAATGTCG
TTCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGATGA
AGAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGGTGT
CGGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAGTTTG
TAAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGTCACA
GTGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTGGGAA
TACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGTATGG
CTGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGTCGAG
ATGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTCTCAA
TTTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAATAAG
ACAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATTTGCA
GAGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGATACA
GACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGAAGTT
CAATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAATGTC
GTTCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGATG
AAGAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGGTG
TCGGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAGTTT
GTAAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGTCAC
AGTGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTGGGA
ATACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGTATG
GCTGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGTCGA
GATGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTCTCA
ATTTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAATAA
GACAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATTTGC
AGAGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGATAC
AGACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGAAGT
TCAATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAATGT
CGTTCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGAT
GAAGAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGGT
GTCGGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAGTT
TGTAAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGTCA
CAGTGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTGGG
AATACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGTAT
GGCTGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGTCG
AGATGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTCTC
AATTTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAATA
AGACAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATTTG
CAGAGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGATA
CAGACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGAAG
TTCAATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAATG
TCGTTCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAGA
TGAAGAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACGG
TGTCGGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAGT
TTGTAAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGTC
ACAGTGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTGG
GAATACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGTA
TGGCTGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGTC
GAGATGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTCT
CAATTTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAAT
AAGACAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATTT
GCAGAGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGAT
ACAGACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGAA
GTTCAATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAAT
GTCGTTCAGGATCATGTCGTGACCTTATGTCAACAAAACGTTGTGAACAG
ATGAAGAAACGTCGCTTCTGTGAAATCTATCCCAAAGAAATGAAGAAACG
GTGTCGGAGAACTTGCCAATTTTGTTGTGCTGACTCATCGAGTGCTTCAG
TTTGTAAAACGTTATCCAAGTTTAGCCAACGTGTTCGGGAACGGACGTGT
CACAGTGAAAAGTTTTACCCAATCCTCAAAAAGAGCTGTCCGAAAACGTG
GGAATACTGTGGAAAGGCACCATCAGAGCCACCTTGTGTGCGTTCAAAGT
ATGGCTGTTGCTGGGAAGGAACGATCGCAAAAGACCACGTGGGGACAAGT
CGAGATGGATGTCCAGAATGTAAAGATCGCTCTGGAAAGGAATTCTGTTC
TCAATTTCGTGTTCACTGTAATGACAAATTCTCAAGATCCGGAAGACAAA
TAAGACAACTTTGCCCTAGAACATGCAGACGATGTGGACcTCACCAAATT
TGCAGAGACGAACCAACGCTTTTAGATTCTTGTTTACAAATGAAGCATGA
TACAGACTCATCTGGTAGCAAACCGTGTGTTGATAATTTCCACGTCATGA
AGTTCAATTGCCCTAAAACATGCAAAATCTGCAAAGTTTCAACGATCGAA
TGTCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041085XLOC_041085Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065556-proteinTCONS_00065556-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065556-exon-scaffold_440-1491911889:252147..252267TCONS_00065556-exon-scaffold_440-1491911889:252147..252267Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1510915933:252147..252267TCONS_00065556-exon-scaffold_440-1510915933:252147..252267Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1575043694:252147..252267TCONS_00065556-exon-scaffold_440-1575043694:252147..252267Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1491911889:252881..253018TCONS_00065556-exon-scaffold_440-1491911889:252881..253018Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1510915933:252881..253018TCONS_00065556-exon-scaffold_440-1510915933:252881..253018Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1575043694:252881..253018TCONS_00065556-exon-scaffold_440-1575043694:252881..253018Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1491911889:259468..259569TCONS_00065556-exon-scaffold_440-1491911889:259468..259569Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1510915933:259468..259569TCONS_00065556-exon-scaffold_440-1510915933:259468..259569Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1575043694:259468..259569TCONS_00065556-exon-scaffold_440-1575043694:259468..259569Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1491911889:260520..260642TCONS_00065556-exon-scaffold_440-1491911889:260520..260642Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1510915933:260520..260642TCONS_00065556-exon-scaffold_440-1510915933:260520..260642Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1575043694:260520..260642TCONS_00065556-exon-scaffold_440-1575043694:260520..260642Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1491911889:262865..263014TCONS_00065556-exon-scaffold_440-1491911889:262865..263014Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1510915933:262865..263014TCONS_00065556-exon-scaffold_440-1510915933:262865..263014Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1575043694:262865..263014TCONS_00065556-exon-scaffold_440-1575043694:262865..263014Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1491911889:263564..263581TCONS_00065556-exon-scaffold_440-1491911889:263564..263581Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1510915933:263564..263581TCONS_00065556-exon-scaffold_440-1510915933:263564..263581Clytia hemisphaericaexon
TCONS_00065556-exon-scaffold_440-1575043694:263564..263581TCONS_00065556-exon-scaffold_440-1575043694:263564..263581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_440supercontigscaffold_440:252147..263581 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.240256	0.0780957	0.362706	0	0	0	0.102962	0	0.134973	0.250778	0	0.0533363	0.0532621	0	0	0	6.31256	15.3436	0	0	1.78091	2.49269	21.0277	35.0622	38.8647	62.9257	6.14951	7.73488	4.26664	4.52816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065556 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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