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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065539 ID=TCONS_00065539|Name=TCONS_00065539|organism=Clytia hemisphaerica|type=transcript|length=2178bp
agggtcgcaaaaacaccaaaatagaaaaatcagtccctcgtagggtgcct
atttttggaaaatttggggaaaaagtagaaaatttgagacaattttggaa
tttcagtcccattcaggctcacttttttcgcaaatttcgagtcccacgta
gggtccatttttcgaacctcaacGGAGCACCCCcatcggtcgacaagggt
agtacccctcccccccgGGACTTGAAATCGTTCTTGTCAAAGAAAAATAC
GAATAAAAAATcgcatatttttatttttgcaatatttattgcaaagctca
aatattctaaaaagagaaaataatcgATTATTCCATCTTCATTATTCAAG
TTTTCTAAAATTGATTAATCTATCACATTACAGAAATATAATTCCAACGT
TGCGTGGCTTTATAATAAAATAAAGCATAGATGCGTGCTAAAgaattgtt
aaaaaaaaggtAACGTGTCCACATATGTATGTATAAATTGAGACGCAAAC
TTGAATgacttttgttttattttattttaaaggtaaaatctttgtcaaat
aagatttttttggcacattgtatttttttattgacttagaccatgttcag
acgttacagtTCCGTTTTGCTCCAAAGCAAAACGAAACGGTTCCAAAACa
ctgtgtgaacgtcaaaattcgaaacgtcaaaaaagaagaccgtacaaagc
aaaacagatcgaaacggtttcgcccCACTTTTTTCATAGGAATGGAAATG
CTCCGTTTTTATGCTCCGAAAAGTTCCAAActaatatgaacactctcgat
ccgtaacgtctgaacatggtttAAGATTCTCAACatttatacactttttt
ttctataaattcaCGCAAATAATTAATATTCATAAAAATTATAGAGCAAC
TATCCCGCcattatcttttcaaaacaaatttccgTAACGTTTTACCTTTA
ACAGTATGTCCAATCTTGATGATTTTTCGGACGACAAGATACCGGACATT
CTTTAACATCCTTTACGGAACAATCCCGGACACAACCAACGTAGAAGTCG
TTTCGTTGAGTCGGAAAAGGTTTCGAACCAGCAAAATGTTCACAATAGAA
AGAATCGTGCTGTAAAACGTTCTGATTCAATCTTGTCCATAGTTCTGTTT
CAAGAACCTTTTGATCGAAAGATTTACGCCAACTATCTAATGAATTCTTA
GCTCTTGAGATCATTTTCTTGAATATTTGATGACTCAGTTTCCTGTCTAG
GTTAGGGCGTATACACCACATCCCGCCCATAACGGGAACATTATGGTATT
GTTTATCACGCATAACGTGTAACATTTTCCCAGAACTCAACCATTCATTT
ACGGCGTCACCCTCACGTTGAAGCAACGGTGAATCCAAGTCACGGGAGCA
CATAACGTCGCAAAGCTCATCCACCATCGGCAAGAAACGCCAAAACATTC
CCGGTACGTTGGGTGTTATTGAAAATTTTGCGACGTCGCAAAACTCGACG
TTTTCTAACGCCGTATAGCGCACTTTCAATTTCCGGTAATTTCTAGTATC
CGTATAAATACGAATGGCAAATGTTTGATAAGTCTCAATCTTGGAAGCTT
CTCTTGATAAATCGTGGATAAATTTAGAAAATCGTTCCCCTTTTTCACCG
AAAAGAGAATAAGACAAAATATGTTTTCTCCCAGTCTTGCCGCATGAATC
TGTATTAAGATCAGCAACATTTAGACGCATTGCAGTATTCGATGCTTCCC
TCACAACCCTTTTCTTTCTATGTAAATATTGCACCAACTTTGTAAGGTTC
GTCACACGTCTCTGTAACTTCGAAAGTCTCTCCTTTAAATTAACGATGTC
ATTATTTTCTTTGGATAGTTTGTTTTGTGtcagttttgaaaaagtatTTC
GATGCTCATGAAGATTGAAGAGATACGCGAATAATCCGAACACACTGAAA
CAAAATATCAGTGTTTTTACCGAAGCACATCTTATCATTGCAGTGGAAAT
AAAGttatcaacaaaattttgtattcaaatTCATAAACTGGAATAACTTT
TTAACCATAAAGAAATTCTATCGATTGAACAAATATTACCCCACATGAAT
ATTACAGAAAAAAAATCCGTTGGATTTTAGCTCTATTCACTTTGCCAAAG
AAAGGTCACTCAGCCTTCCTCGTTTTTC Run BLAST on NCBI protein sequence of TCONS_00065539-protein >TCONS_00065539-protein ID=TCONS_00065539-protein|Name=TCONS_00065539-protein|organism=Clytia hemisphaerica|type=polypeptide|length=346bp
MIRCASVKTLIFCFSVFGLFAYLFNLHEHRNTFSKLTQNKLSKENNDIVN
LKERLSKLQRRVTNLTKLVQYLHRKKRVVREASNTAMRLNVADLNTDSCG
KTGRKHILSYSLFGEKGERFSKFIHDLSREASKIETYQTFAIRIYTDTRN
YRKLKVRYTALENVEFCDVAKFSITPNVPGMFWRFLPMVDELCDVMCSRD
LDSPLLQREGDAVNEWLSSGKMLHVMRDKQYHNVPVMGGMWCIRPNLDRK
LSHQIFKKMISRAKNSLDSWRKSFDQKVLETELWTRLNQNVLQHDSFYCE
HFAGSKPFPTQRNDFYVGCVRDCSVKDVKECPVSCRPKNHQDWTYC Run BLAST on NCBI transcript from alignment at scaffold_44:158159..160336 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065539 ID=TCONS_00065539|Name=TCONS_00065539|organism=Clytia hemisphaerica|type=transcript|length=2178bp|location=Sequence derived from alignment at scaffold_44:158159..160336 (Clytia hemisphaerica)
GAAAAACGAGGAAGGCTGAGTGACCTTTCTTTGGCAAAGTGAATAGAGCT
AAAATCCAACGGATTTTTTTTCTGTAATATTCATGTGGGGTAATATTTGT
TCAATCGATAGAATTTCTTTATGGTTAAAAAGTTATTCCAGTTTATGAat
ttgaatacaaaattttgttgataaCTTTATTTCCACTGCAATGATAAGAT
GTGCTTCGGTAAAAACACTGATATTTTGTTTCAGTGTGTTCGGATTATTC
GCGTATCTCTTCAATCTTCATGAGCATCGAAatactttttcaaaactgaC
ACAAAACAAACTATCCAAAGAAAATAATGACATCGTTAATTTAAAGGAGA
GACTTTCGAAGTTACAGAGACGTGTGACGAACCTTACAAAGTTGGTGCAA
TATTTACATAGAAAGAAAAGGGTTGTGAGGGAAGCATCGAATACTGCAAT
GCGTCTAAATGTTGCTGATCTTAATACAGATTCATGCGGCAAGACTGGGA
GAAAACATATTTTGTCTTATTCTCTTTTCGGTGAAAAAGGGGAACGATTT
TCTAAATTTATCCACGATTTATCAAGAGAAGCTTCCAAGATTGAGACTTA
TCAAACATTTGCCATTCGTATTTATACGGATACTAGAAATTACCGGAAAT
TGAAAGTGCGCTATACGGCGTTAGAAAACGTCGAGTTTTGCGACGTCGCA
AAATTTTCAATAACACCCAACGTACCGGGAATGTTTTGGCGTTTCTTGCC
GATGGTGGATGAGCTTTGCGACGTTATGTGCTCCCGTGACTTGGATTCAC
CGTTGCTTCAACGTGAGGGTGACGCCGTAAATGAATGGTTGAGTTCTGGG
AAAATGTTACACGTTATGCGTGATAAACAATACCATAATGTTCCCGTTAT
GGGCGGGATGTGGTGTATACGCCCTAACCTAGACAGGAAACTGAGTCATC
AAATATTCAAGAAAATGATCTCAAGAGCTAAGAATTCATTAGATAGTTGG
CGTAAATCTTTCGATCAAAAGGTTCTTGAAACAGAACTATGGACAAGATT
GAATCAGAACGTTTTACAGCACGATTCTTTCTATTGTGAACATTTTGCTG
GTTCGAAACCTTTTCCGACTCAACGAAACGACTTCTACGTTGGTTGTGTC
CGGGATTGTTCCGTAAAGGATGTTAAAGAATGTCCGGTATCTTGTCGTCC
GAAAAATCATCAAGATTGGACATACTGTTAAAGGTAAAACGTTAcggaaa
tttgttttgaaaagataatgGCGGGATAGTTGCTCTATAATTTTTATGAA
TATTAATTATTTGCGtgaatttatagaaaaaaaagtgtataaatGTTGAG
AATCTTaaaccatgttcagacgttacggatcgagagtgttcatattagTT
TGGAACTTTTCGGAGCATAAAAACGGAGCATTTCCATTCCTATGAAAAAA
GTGgggcgaaaccgtttcgatctgttttgctttgtacggtcttctttttt
gacgtttcgaattttgacgttcacacagtGTTTTGGAACCGTTTCGTTTT
GCTTTGGAGCAAAACGGAactgtaacgtctgaacatggtctaagtcaata
aaaaaatacaatgtgccaaaaaaatcttatttgacaaagattttaccttt
aaaataaaataaaacaaaagtcATTCAAGTTTGCGTCTCAATTTATACAT
ACATATGTGGACACGTTaccttttttttaacaattcTTTAGCACGCATCT
ATGCTTTATTTTATTATAAAGCCACGCAACGTTGGAATTATATTTCTGTA
ATGTGATAGATTAATCAATTTTAGAAAACTTGAATAATGAAGATGGAATA
ATcgattattttctctttttagaatatttgagctttgcaataaatattgc
aaaaataaaaatatgcgATTTTTTATTCGTATTTTTCTTTGACAAGAACG
ATTTCAAGTCCcgggggggaggggtactacccttgtcgaccgatgGGGGT
GCTCCgttgaggttcgaaaaatggaccctacgtgggactcgaaatttgcg
aaaaaagtgagcctgaatgggactgaaattccaaaattgtctcaaatttt
ctactttttccccaaattttccaaaaataggcaccctacgagggactgat
ttttctattttggtgtttttgcgaccct Coding sequence (CDS) from alignment at scaffold_44:158159..160336 >TCONS_00065539 ID=TCONS_00065539|Name=TCONS_00065539|organism=Clytia hemisphaerica|type=CDS|length=1041bp|location=Sequence derived from alignment at scaffold_44:158159..160336 (Clytia hemisphaerica)
ATGATAAGATGTGCTTCGGTAAAAACACTGATATTTTGTTTCAGTGTGTT
CGGATTATTCGCGTATCTCTTCAATCTTCATGAGCATCGAAatacttttt
caaaactgaCACAAAACAAACTATCCAAAGAAAATAATGACATCGTTAAT
TTAAAGGAGAGACTTTCGAAGTTACAGAGACGTGTGACGAACCTTACAAA
GTTGGTGCAATATTTACATAGAAAGAAAAGGGTTGTGAGGGAAGCATCGA
ATACTGCAATGCGTCTAAATGTTGCTGATCTTAATACAGATTCATGCGGC
AAGACTGGGAGAAAACATATTTTGTCTTATTCTCTTTTCGGTGAAAAAGG
GGAACGATTTTCTAAATTTATCCACGATTTATCAAGAGAAGCTTCCAAGA
TTGAGACTTATCAAACATTTGCCATTCGTATTTATACGGATACTAGAAAT
TACCGGAAATTGAAAGTGCGCTATACGGCGTTAGAAAACGTCGAGTTTTG
CGACGTCGCAAAATTTTCAATAACACCCAACGTACCGGGAATGTTTTGGC
GTTTCTTGCCGATGGTGGATGAGCTTTGCGACGTTATGTGCTCCCGTGAC
TTGGATTCACCGTTGCTTCAACGTGAGGGTGACGCCGTAAATGAATGGTT
GAGTTCTGGGAAAATGTTACACGTTATGCGTGATAAACAATACCATAATG
TTCCCGTTATGGGCGGGATGTGGTGTATACGCCCTAACCTAGACAGGAAA
CTGAGTCATCAAATATTCAAGAAAATGATCTCAAGAGCTAAGAATTCATT
AGATAGTTGGCGTAAATCTTTCGATCAAAAGGTTCTTGAAACAGAACTAT
GGACAAGATTGAATCAGAACGTTTTACAGCACGATTCTTTCTATTGTGAA
CATTTTGCTGGTTCGAAACCTTTTCCGACTCAACGAAACGACTTCTACGT
TGGTTGTGTCCGGGATTGTTCCGTAAAGGATGTTAAAGAATGTCCGGTAT
CTTGTCGTCCGAAAAATCATCAAGATTGGACATACTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065539-exon-scaffold_44-1491911889:158159..160336 | TCONS_00065539-exon-scaffold_44-1491911889:158159..160336 | Clytia hemisphaerica | exon |
| TCONS_00065539-exon-scaffold_44-1510915933:158159..160336 | TCONS_00065539-exon-scaffold_44-1510915933:158159..160336 | Clytia hemisphaerica | exon |
| TCONS_00065539-exon-scaffold_44-1575043694:158159..160336 | TCONS_00065539-exon-scaffold_44-1575043694:158159..160336 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_44 | supercontig | scaffold_44:158159..160336 . |
Blast
The following BLAST results are available for this feature:
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