TCONS_00065524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065524
Unique NameTCONS_00065524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1368

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065524 ID=TCONS_00065524|Name=TCONS_00065524|organism=Clytia hemisphaerica|type=transcript|length=1368bp
GCGCTGAAATGGCTTATGATGAATGCAGACACCAATTTCGCTGGCGTCGT
TGGAACTGTGCAGCTAAGAAGCCAGTATTGACGAACAATGTATGGACATA
CGAAACGAACGAATACCCTTCCCTGTTCGGAGAGGATTTTGAACCAGGTG
GAATCGAGGCTTCATTTGTCAACGCGATTTTCTCATCTGGAGTTGCTTAC
TCAATCACAAAAGCATGTTCCTCAAACAAATTGGAAGGTTGTTCATGCGA
GCGCAATAAGGACGGAACAAttaccaaaacaacaacaacaaaaacaacaa
cagcgCATCACCTTAGTAACGGTTTCCAATGGCATCAATGTAATGATAAT
GTAATGTTTGGCTTGTCATTTGCAAAGAAGTTTATTGATAGTGTGGAGTT
AAATTGGAACCCAGATCGCATGTTCACGACGCATGCGCAGGTTATGATGA
ACCTACATAATAATAAAGTTGGAAGAATGctCTTGAAGGAGAATTTACAG
CAAAATTGTGTCTGTCATGGAGTTTCTGGCACGTGCAGCACTCAAGTTTG
TTCCAAACGTCTCGGACCTTATAGAGACATCGGTGGTCTATTACGAAAGA
GGACTGAAAAAGCAATCAAAGTGACtttgaaatatataaatacACATCGC
ATATTGATGCCAGCTGATAATCAACTGGCTCCAGTGACCGACACTGATCT
TATTTATTTGAAATCATCACCATCATATTGTAATAAGACTACTGGAAGGC
GGTGTAAATTGAACAGTAAAAAGAAGGCGAAAAAGAAGCCCCGTGGAGGT
TGTGATATGATGTGTTGTGGTGCAGGCTATAGGACTAAATTACGAACTGT
GACGAAGAACTGTAAATGTCAATTCATTTGGTGTTGTAAAGTCACATGCG
AGAAATGTTATCATCAACAGAAAGTTCATAGTTGTAAATAAATAACAGAC
GCAGGAGCTTTAGCGAAGGAAATTGGAGGGAAATGCCAAGGAGGTTCAGC
TCGCTTTTTTTGATTTGTAGCCTTCATTTGATTTCAAAAGCACGATTGAA
AGACGAAGTCAATATTTcagcaaaaaagaaatttgaatattgaaaaGATG
TTCATGGTTGttaaaattgaaacatgttTTTACTTTTACCttTACGAAAA
GAGACATGACATTAGTCCCCCTTTAATCCTTTCAAAAACGCAATGTATAA
CGGGAGGACATCgtgtaaatatgattttttagagattttgtagttttata
atttatagactttattttttatgtacaaaaattgacGATTTTAAAAATAA
GCAAATTTACGACAAAAATTGGTAGTAACTATTTATCATCgatagatttt
tcaaaaaaagaaatggaT
Run BLAST on NCBI

transcript from alignment at scaffold_44:358273..362072-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065524 ID=TCONS_00065524|Name=TCONS_00065524|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at scaffold_44:358273..362072- (Clytia hemisphaerica)
GCGCTGAAATGGCTTATGATGAATGCAGGTAAGATGTTGTTATTTATTGA
TAATGAAATGGTTTATATTTATCATATTTAACGCAATAAAATCTCTACCC
GAGATACTGTGTGCAATATTATTGGTTTAGCGTCTTCTAACCCCTCAAAG
CCAACAAAGGCNATGGTTTATATTTATCATATTTAACGCAATAAAATCTC
TACCCGAGATACTGTGTGCAATATTATTGGTTTAGCGTCTTCTAACCCCT
CAAAACCAACAAAGGACTAATTTTCAAACTTCTGCTACTGTAGCTTTACG
AGTACAGACAATCTTTCCGTGAAGTAAGAAATCTTATAACAATCGTATAC
TTTTTGAAGAAGTGGTTTTGTTCCAACATTAGCGAGGTTGATCTAGCACA
AAACTGTTATTTATGGTGTCGGTTCCATTGGTTCAGTAATGCAACTCTCC
CGCTGATTTTTCTTACGTATACCGGCCGCCAAAACGGCTGTAAACTCCGC
GCGTATAATATTTTCCCGCTTTTACTATCACTGTAACGGACGGTAACACT
GTCTACGTTTTCTGAGGCCCGATTTACAGGCTATTTAAAAGACCTGAAAT
TTAGACCTTTTGGGATTTTTTGAAGGCATGTCGACTTGAAACGTGTTTGA
TAAAGTTAGAGAAAGAAATTAGAAACTAAGAAAGCGCGTTTGGGAATAAA
TATAACACGTAAACAAAGATTGAAATGGGGAAAATCAGACCTCATAAGCT
TGATATTAAAGATCAGTTTGTACACCAAGCATAAACGTTTGATCCTACCT
ACATTTTCAGACACCAATTTCGCTGGCGTCGTTGGAACTGTGCAGCTAAG
AAGCCAGTATTGACGAACAATGTATGGACATACGAAACGAACGAATACCC
TTCCCTGTTCGGAGAGGATTTTGAACCAGGTAAGGTTTATCCTCTAACCA
AATTTGAGGCAAAATCGACCTTATGGTATATTTTTTTGGAAATTCTTTGT
CCTTCATAGAGCAGAAAGTGGCAGGATATTTGCCCCAAAGGTTTTGCAAT
ACATTATTTTTTGGTCTTTACACACCTTAAAGTACACTGTCCTTAACACA
GTCCACTATTGGAAACCCTGAAAATGTGTACTATTGACGACCAAGGGGCA
GGCGGGTTTAAAAGGATATTGCAAAAATATTTTAAAAACTGTCATACCTT
GACCCGTTTTCTATCCTTCATTCTTGAACAGGTGGAATCGAGGCTTCATT
TGTCAACGCGATTTTCTCATCTGGAGTTGCTTACTCAATCACAAAAGCAT
GTTCCTCAAACAAATTGGAAGGTTGTTCATGCGAGCGCAATAAGGACGGA
ACAATTACCAAAACAACAACAACAAAAACAACAACAGCGCATCACCTTAG
TAACGGTTTCCAATGGCATCAATGTAATGATAATGTAATGTTTGGCTTGT
CATTTGCAAAGAAGTTTATTGATAGTGTGGAGTTAAATTGGAACCCAGAT
CGCATGTTCACGACGCATGCGCAGGTTATGATGAACCTACATAATAATAA
AGTTGGAAGAATGGTTAGTATAACACACGCGTTTTTTATGAGAACTAGTA
AATTTAGGCTTGGCTGTTCTTATTTTTTCGATTTTCAGACTGTTCTTAAA
ATGTTCTTAATATCCTTACTTTATTCACTTACTGACTTAAAAAGCGGCAT
TTTCATTTTTGAAATTCTGAAGCTTTAATCTGGTCTTCTTATGAAAAAGC
GGATGTGGGTGTTATGGAATTTCATTTTATTTTAAAGATCCTGCTCCCCC
CCTGGGGACGGAAATCTTATATAGGGTTTTAAGATTTATTTCTAGGAAAG
CTTCATTGTTCTTTAACTCAGGGAAAGAACCCCACACAACTATTAATAAG
TATATGTTTTTCAATTTCAGCTCTTGAAGGAGAATTTACAGCAAAATTGT
GTCTGTCATGGAGTTTCTGGCACGTGCAGCACTCAAGTTTGTTCCAAACG
TCTCGGACCTTATAGAGACATCGGTGGTCTATTACGAAAGAGGACTGAAA
AAGCAATCAAAGTGACTTTGAAATATATAAATACACATCGCATATTGATG
CCAGCTGATAATCAACTGGCTCCAGTGACCGACACTGATCTTATTTATTT
GAAATCATCACCATCATATTGTAATAAGACTACTGGAAGGCGGTGTAAAT
TGAACAGTAAAAAGAAGGCGAAAAAGAAGCCCCGTGGAGGTTGTGATATG
ATGTGTTGTGGTGCAGGCTATAGGACTAAATTACGAACTGTGACGAAGAA
CTGTAAATGTCAATTCATTTGGTGTTGTAAAGTCACATGCGAGAAATGTT
ATCATCAACAGAAAGTTCATAGTTGTAAATAAATAACAGACGCAGGAGCT
TTAGCGAAGGAAATTGGAGGGAAATGCCAAGGAGGTTCAGCTCGCTTTTT
TTGATTTGTAGCCTTCATTTGATTTCAAAAGCACGATTGAAAGACGAAGT
CAATATTTCAGCAAAAAAGAAATTTGAATATTGAAAAGATGTTCATGGTT
GTTAAAATTGAAACATGTTTTTACTTTTACCATTTAGACCCTAATGCTGA
TGGCGTAGACAATCGGAGAAAGTGAGTAGGAAATTTCGGATATGACAAAT
CAAAGATCATGTGTATTCTGTACGGTTGAATAGATAATCTTTTAAATTTA
TCTGGAAAGCCAATAAATATTTGTAATAGACAAAATATTTGGAAACTTTA
CGAAAAGAGACATGACATTAGTCCCCCTTTAATCCTTTCAAAAACGCAAT
GTATAACGGGAGGACATCGTGTAAATATGATTTTTTAGAGATTTTGTAGT
TTTATAATTTATAGACTTTATTTTTTATGTACAAAAATTGACGATTTTAA
AAATAAGCAAATTTACGACAAAAATTGGTAGTAACTATTTATCATCGATA
GATTTTTCAAAAAAAGAAATGGATCTTGTTAACATAAATTCAACAAGGAA
TTAACGTGGCTCTCTAGAAATTATTAGACCGAGTCTATTATCTGATTTTC
CGATGGCGGATTGGCAGCCGCCCACGCTAAAGCTCTAAAGCAGCCGGCAG
GCTTCCCCTCGGATAGGAATGATAGTCGACCTTTGATGTGTCGCATCCCA
GTCGGGTTTAACTACTCTTGTCTCCCGAATAGACGGGGGGGGTCCGAATA
AGCAGGGAGGTAGGGAAATTTTCTAAATTCTAATAAGCGAGGGGGATTGA
ATAAGAGNAGGTTCAGCTCGCTTTTTTTGATTTGTAGCCTTCATTTGATT
TCAAAAGCACGATTGAAAGACGAAGTCAATATTTCAGCAAAAAAGAAATT
TGAATATTGAAAAGATGTTCATGGTTGTTAAAATTGAAATATGTTTTTAC
TTTTACCATTTAGACCCTAATGCTGATGGCGTAGACAATCGGAGAAAGTG
AGTAGGAAATTTCGGATATGACAAATCAAAGATAATGTGTATTCTGTACG
GTTGAATAGATAATCTTTTAAATTCATCTGGAAAGCCAATAAATATTTGT
AATAGACAAAATATTTGGAAACTTTACGAAAAGAGACATGACATTAGTCC
CCCTTTAATCCTTTCAAAAACGCAATGTATAACGGGAGGACATCGTGTAA
ATATGATTTTTTAGAGATTTTGTAGTTTTATAATTTATAGACTTTATTTT
TTATGTACAAAAATTGACGATTTTAAAAATAAGCAAATTTACGACAAAAA
TTGGTAGTAACTATTTATCATCGATAGATTTTTCAAAAAAAGAAATGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041060XLOC_041060Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065524-exon-scaffold_44-1575043694:362045..362072TCONS_00065524-exon-scaffold_44-1575043694:362045..362072Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1575043694:361144..361262TCONS_00065524-exon-scaffold_44-1575043694:361144..361262Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1575043694:360510..360841TCONS_00065524-exon-scaffold_44-1575043694:360510..360841Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1575043694:359492..360152TCONS_00065524-exon-scaffold_44-1575043694:359492..360152Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1575043694:358273..358500TCONS_00065524-exon-scaffold_44-1575043694:358273..358500Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1510915933:362045..362072TCONS_00065524-exon-scaffold_44-1510915933:362045..362072Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1510915933:361144..361262TCONS_00065524-exon-scaffold_44-1510915933:361144..361262Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1510915933:360510..360841TCONS_00065524-exon-scaffold_44-1510915933:360510..360841Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1510915933:359492..360152TCONS_00065524-exon-scaffold_44-1510915933:359492..360152Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1510915933:358273..358500TCONS_00065524-exon-scaffold_44-1510915933:358273..358500Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1491911889:362045..362072TCONS_00065524-exon-scaffold_44-1491911889:362045..362072Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1491911889:361144..361262TCONS_00065524-exon-scaffold_44-1491911889:361144..361262Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1491911889:360510..360841TCONS_00065524-exon-scaffold_44-1491911889:360510..360841Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1491911889:359492..360152TCONS_00065524-exon-scaffold_44-1491911889:359492..360152Clytia hemisphaericaexon
TCONS_00065524-exon-scaffold_44-1491911889:358273..358500TCONS_00065524-exon-scaffold_44-1491911889:358273..358500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:358273..362072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.81133e-07	0	0	0	4.70571e-05	0	0	8.84204e-07	0.00270035	0	0.00046488	0	0	0	5.72908e-09	0	3.86538e-06	1.54286e-08	0	1.98416e-05	3.47621e-05	0	0.000130862	0	0.000176497	0	2.15017e-05	0	4.04413e-06	0.000348814
Blast
[Close]
BLAST of TCONS_00065524 vs. Swiss-Prot (Human)
Match: WNT4 (Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4)

HSP 1 Score: 213.772 bits (543), Expect = 3.569e-64
Identity = 110/320 (34.38%), Postives = 177/320 (55.31%), Query Frame = 3 
Query:    3 AEMAYDECRHQFRWRRWNCAAKKPVLTNNVWTYETNEYPSLFGEDFEPGGIEASFVNAIFSSGVAYSITKACSSNKLEGCSCERNKDGXXXXXXXXXXXXAHHLSNGFQWHQCNDNVMFGLSFAKKFIDSVELNWNPDRMFTTHAQVMMNLHNNKVGRMLLKENLQQNCVCHGVSGTCSTQVCSKRLGPYRDIGGLLRKRTEKAIKVTLKYINTHRILMPADNQLAPVTDTDLIYLKSSPSYCNK--------TTGRRCKLNSXXXXXXXPRGGCDMMCCGAGYRTKLRTVTKNCKCQFIWCCKVTCEKCYHQQKVHSCK 938
            A++A +EC++QFR RRWNC+              T +   +FG+    G  EA+FV AI S+GVA+++T+ACSS +LE C C+R   G                  GFQW  C+DN+ +G++F++ F+D  E +        + ++ +MNLHNN+ GR  +  +++  C CHGVSG+C  + C + + P+R +G  L+++ + A +V  + + + R L+P + Q  P TD DL+YL+ SP +C +        T GR C   SK         GC+++CCG G+ T    + + C C+F WCC V C +C    ++H+C+
Sbjct:   71 AQLAIEECQYQFRNRRWNCS--------------TLDSLPVFGKVVTQGTREAAFVYAISSAGVAFAVTRACSSGELEKCGCDRTVHGVS--------------PQGFQWSGCSDNIAYGVAFSQSFVDVRERSKG-----ASSSRALMNLHNNEAGRKAILTHMRVECKCHGVSGSCEVKTCWRAVPPFRQVGHALKEKFDGATEVEPRRVGSSRALVPRNAQFKPHTDEDLVYLEPSPDFCEQDMRSGVLGTRGRTCNKTSKAI------DGCELLCCGRGFHTAQVELAERCSCKFHWCCFVKCRQCQRLVELHTCR 351
The following BLAST results are available for this feature:
BLAST of TCONS_00065524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
WNT43.569e-6434.38Protein Wnt-4 OS=Homo sapiens GN=WNT4 PE=1 SV=4[more]
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