TCONS_00065519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065519
Unique NameTCONS_00065519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065519 ID=TCONS_00065519|Name=TCONS_00065519|organism=Clytia hemisphaerica|type=transcript|length=2556bp
GGACATTATGCTATAAGATTTCAAAGTGATAAGACCTTCACTCCAGGAGA
TTTAATAGTATACAGTGTATTATTATGTTAAAAATTTGAGCTTGAATTTT
GCTTCAATTTTATACCTACACGTGCTTAAGAGACTGTAGTGTTGAAAAGG
GTTTTCACTGACAAAACTTAATTTCGAGATGGTTAACCCAGCAGTATTTA
ACAGTAACTTTGGTGAATGGAAAAAGAGAACGAAAAAAGATCGTTACATG
ATTTTACCACAGGATTTGACTTTGTTGAAATTGGTGAATTTTGAGGACTT
TGTTGTCATGGATGTCATTGATAATATAGATTTTGGCAAAAAGAACTCAG
TGACAAGCAAACAGTATGAAGAATTAAAGAACGCATTCATTGCGTTTGAT
CGGAATTGCGATGGATTCATCGATTCTGAAGATCTTGGATACGTCATGGG
CAAACTTGGTCATGATCTGTCATCTAAAGAAGTCAAAAAGGTTTTCAAAG
ATATCTGCAAACACAGTAATGGCAAGATGGATTTCACAGATTTCGTAGAA
ATGATGGCACAAGATAAATTAGTTCTAACCACAAGCGAACAAGAGATCTT
AGCAGCGTTCCAATTTCTTGATCAAAATCATGATGGATATATCACCATAG
ATGAGTTACTACAACGTTTCCATGGCTGCCTGTCCGATACGGAAGCATCC
CGGTTAATGTGTGAAGCGGACGCTAATGGTGACGGAAAGATCGATTTCAA
CGAATTCAAACACATGATGTTTAATCAAGAACGAAGCATCTCATTGGCTC
AATCTGAAGTAGAATTATACTcatgagaaagaaagaaatctcATCCTTCG
AAAATTTCACTACTCAAAGAAAAATCGTCCAAATCCACATTTTTGCTGGT
CATGTTTACCATGGCAACGAATTCATATCATTCGCGCAAGGATTGACGAC
ATCAATATGGTACCCACAATGCTGTTCGGTGTCATTAGATGAAATACAGT
ACACCAGAGACAcaagaaaaacgaaaattagaacatttttttatagACAT
CAAAACTAATGAATATTGATAGGGAATAGTACAGAGATAACTTGACATAA
AGCGCTTCATCCAATCAGGGGGAGTCCTGgaccttattttcaaatatgaC
AATTTATAGTATTCTAGTACCGTTACTCGAGAGGGAGATTTTAACCACCA
CAAAAATGTACTTTTTCGGTCTTCCAGTTGTACCCACAACTTTTTGTGAT
ATTCTTACTTTGAACAGAAAGATTTTGGTACTGTTATGGTGAAATTTACC
CCTCTTAAGTAGCGGTACTAAATATTTTGGGAAGNATTGTTATGGTGAAA
TCCCTCCTAAGTAGCGGTGCTAAGTATTTTGGTAAACATTATCTAATCGT
CGTTGCCATTGATgcaaaaggtccaatctcaaaattagtgtcTGAGAAAA
CTCAGGTTTATTTTGCTTTGGAGGTTAGCCCTTTTTCTTGTAAGGATCAT
ATCTACACACTAATTATATTATACTAAGTCAGATTAGACCTTTTGCCTTG
ATGACAGCGctttcttgatattcatgacgtaatcttttgtacggaaacac
ccgaaaaacacCGGGCGTTTGCTATCAGTTTTGAATTTATATAACTAAAC
TGGTGGTAAACGCCCGgtgtttttcgggtgtttccgtataaaattTTACG
TCGTGAATATCAAGAATAATGTAAGGCGTCCTTGATAATCAAGAGATAGA
ACAGGTAGATACAaaagttattttacattttttactaGAATCCTAGCAAG
TATAATTGTAGTAaactttttgtacaaaaatgttcctttttaccacattc
tacttttttgtttGTGGTGATCGCAATATTGTAGGTCATCAAATGtaaaa
tttctttacaatatAATGTACATAAAAAGTTATGGATTAAAAAACATTAT
GTTCCCATAtttgttaaaaacaaaaatcgTCTACGGagtaaaaatttaag
aaatcaTTTTGCAGGGATTTTTGAGTTCGTGTTTCGACTGgctaacttaa
aaaaaaacttaaaacgtTTTTACGCAACTAACGGAGGTACAAAGAGTTTC
GAATATTCAAACAAGTAGGTCCAAGCTTTAAGAATATAAGGTTTTAAAAC
TAGAACCAAATCTTATATTAACGAGAATTGTTTCGAAATTTTATATCTCG
ACAAATGTGGGTCCAATACATACGTGATCTTTTTTCGTTAGACTcgaaaa
caaaatttcgagaatcCTTTAGCggtaaaatttaccaaaaatttAACTCC
TTTTGAAATGGCCGGTATTTGGTCTTTTCCATTCTTCCTTACCATCATTT
CCAAGACTTGGCGAAGTGGCAACCATGCTTTCAATGGCCGGTCAGTATAA
GCACTTTGATTGGATGATGATTTTGGCAACAGTTTGGATGGCAAGCGCCG
ATCAATCAATTGACAGCTGAAACATTCTCCGCGTAACGTCACCACATGAA
CATTATCATTTCTTCAAAGTGTTGCTATGACGAAACCgtaaaaataataa
agtaaC
Run BLAST on NCBI

transcript from alignment at scaffold_44:332001..336578-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065519 ID=TCONS_00065519|Name=TCONS_00065519|organism=Clytia hemisphaerica|type=transcript|length=4578bp|location=Sequence derived from alignment at scaffold_44:332001..336578- (Clytia hemisphaerica)
GGACATTATGCTATAAGATTTCAAAGTGATAAGACCTTCACTCCAGGAGA
TTTAATAGTATACAGTGTATTATTATGTTAAAAATTTGAGCTTGAATTTT
GCTTCAATTTTATACCTACACGTGCTTAAGAGACTGTAGTGTTGAAAAGG
GTTTTCACTGACAAAACTTAATTTCGAGATGGTTAACCCAGCAGTATTTA
ACAGTAACTTTGGTGAATGGAAAAAGAGAACGAAAAAAGATCGTTACATG
ATTTTACCACAGGATTTGACTTTGTTGAAATTGGTGAATTTTGAGGACTT
TGTTGTCATGGATGTCATTGATAATATAGATTTTGGCAAAAAGGTAGAAT
AGATCCGCCCTTTTGGTATTTTACCAAAGAAAATATCTAAGCCACCTTAG
CTTTCCTGTATCATACTGTATGACAGAAGAAAGCTCTGAAAAAGCAGCAG
AAATTTTAAACCTTATTTCCCTTTATTTTTCAGAACTCAGTGACAAGCAA
ACAGTATGAAGGTAAGAAAAACTATTCAGTACAAAACCCTATAGTCGATA
ATGAAGTGATTGGCATGCAACTACGCGATTGATTGAAATCTTATTTTGAT
ATCATCCAAAGATTTAAGCAGAATATAGACTTGAAAGCATGAATTCAAAA
TTATAATTTGGGCCCAACATTGATGTCTCTTACCCCGATTATTTCGCTGC
ATGAATTTATCTTGACAACATCCATTTTCTTTCCTCTTTTCAGAATTAAA
GAACGCATTCATTGCGTTTGATCGGAATTGCGATGGATTCATCGATTCTG
AAGATCTTGGATACGTCATGGGCAAACTTGGTCATGATCTGTCATCTAAA
GAAGTCAAAAAGGTTTTCAAAGATATCTGCAAACACAGTACGTAAAACTA
AGTATTACTTTCAGCCTTGGCTTAACTAGACTGAGTTTTCTTCGACTGAT
CATAAAGCCATAAACCAATATTTGGGATTATCTTTATTAGGGGCCTCTGC
TAATCCTCAATCCTCAAAAATGTTCTTACAGAAAGTATGGAGGTATGTGA
ATCTTTCGCCTTTTAGTCATTCGCTTAATTAATTTCCTTGATAAGTTGGT
GAGGTTTTAGCTTGTAAGGGAGATGATGTTTCTATACGCGAACTGAAGTG
ATGCTTTAGATAAGATAAGATCCAAGAGTGGAATTGAGTAGATTTTGAAG
GATTTCGGTAAACAAATGTTTCCTTGTTTGAACAAAAACCCAGGAGGAAA
AAGGTGTGTCCAATTTTCCCTTATTTCATCATGATTTTTGACAAGTAAGT
ATAAATAAGGGAATAGTTGGAAAATCTCGTGCTATTCTATTCATAAATCA
AAAAACTACCTTTCCGTGTTTCTCAAACGAATTTCGATAATTAGGTTCAC
TAATAGGCTCAGATTATTAAGAAATGACTTGTAGCTTGTATGATAATTCG
AAAAGCTAATAATCGAAAGGAATTTCTATTACTTCGTTTTAAAGTGGAGA
TTTTCTTTTGTTTAAATAAGTCTTAATGAAGACAGCTTGAGAATGCTTTA
CAATGGTTTGCGTCCTGACGCACAGAGGCACTTTATCGACTTAAAATCGA
AATGAAAAGTGATTATCATTTGCAATGGTGACGTTTAGACTCAAAGGTAG
CTTTGCCAGTCCTCGGATATTGCTAGCGTTTCACGTTTCAAGCCTAAAAA
TGTTCTTTTTTCATCATTTTGTGAGGATTCCTGTGCATTTCCTAAGAAAT
TGGTTGTTGAAGAGTCTACAAAGTCTTAAAATGTTCTTAAAATGTTCTTA
ACATATTCACCATCGAAGCATTATGTTCTTAGATAGCTTGTTCTTATATA
AAAAACGTTCAACACGTTAAAACAGCATCCATTAAACATCCCCACGGCGT
TTAATTAGGACTTATGGATTGCTAGTTTTCGACTACAAATGGACCATCGA
GATTTCTCTAGCCAATTTAAGGTTGATACCTAAGACCCCCTATCTCAACT
CCAGGCGAGAAAGTCGAAACAGACAAACCCTTTTTGTCTGTTGAAAATAC
AAAAACTGACCTAAAATCATTTAAAATCAATAAAAGATGAAATTAAAAAA
AAAATTCATACCATAGTTTGACCAAATGATATTTTCTCCTAACATAGGTA
ATGGCAAGATGGATTTCACAGATTTCGTAGAAATGATGGCACAAGATAAA
TTAGTTCTAACCACAAGCGAACAAGAGATCTTAGCAGCGTTCCAATTTCT
TGATCAAAATCATGATGGATATATCACCATAGATGAGTTACTACAACGTT
TCCATGGCTGCCTGTCCGATACGGAAGCATCCCGGTTAATGTGTGAAGCG
GACGCTAATGGTGACGGAAAGATCGATTTCAACGGTGAGTGATTGGTTCA
GCCATTTTATTGGAAGATTTTAGTATGGTTATTATTAAAGTCACCATTTC
ATTAGTTTTATTCTTTGAGTTAATTTTTCATTAGTCATCTAAAGAGGGAC
ATAAAGATTATTTGAGGATAAGAAATGTGTTAGTAAATTGAAAGCAATGA
CGGGGCAAATCAAGTATTCATGATATGCACCAATGCAATGTTGCAACTTT
TCTGTTTTTGTTCCACCCAAGACGTCACTTTTTCTATTTTTTAAGTGACG
TATTGGATGGAAAATTTTAAAAATTCTCAAAGACTCTCCAGTGATGGTGC
ATATCATGAATATAACAGTGTAATTTTCGACAAAGAAAGCTAAATTTTCA
ACCCTTTTGAATTTTGTTTTCCAGAATTCAAACACATGATGTTTAATCAA
GAACGAAGCATCTCATTGGCTCAATCTGAAGTAGAATTATACTCATGAGA
AAGAAAGAAATCTCATCCTTCGAAAATTTCACTACTCAAAGAAAAATCGT
CCAAATCCACATTTTTGCTGGTCATGTTTACCATGGCAACGAATTCATAT
CATTCGCGCAAGGATTGACGACATCAATATGGTACCCACAATGCTGTTCG
GTGTCATTAGATGAAATACAGTACACCAGAGACACAAGAAAAACGAAAAT
TAGAACATTTTTTTATAGACATCAAAACTAATGAATATTGATAGGGAATA
GTACAGAGATAACTTGACATAAAGCGCTTCATCCAATCAGGGGGAGTCCT
GGACCTTATTTTCAAATATGACAATTTATAGTATTCTAGTACCGTTACTC
GAGAGGGAGATTTTAACCACCACAAAAATGTACTTTTTCGGTCTTCCAGT
TGTACCCACAACTTTTTGTGATATTCTTACTTTGAACAGAAAGATTTTGG
TACTGTTATGGTGAAATTTACCCCTCTTAAGTAGCGGTACTAAATATTTT
GGGAAGNATTGTTATGGTGAAATCCCTCCTAAGTAGCGGTGCTAAGTATT
TTGGTAAACATTATCTAATCGTCGTTGCCATTGATGCAAAAGGTCCAATC
TCAAAATTAGTGTCTGAGAAAACTCAGGTTTATTTTGCTTTGGAGGTTAG
CCCTTTTTCTTGTAAGGATCATATCTACACACTAATTATATTATACTAAG
TCAGATTAGACCTTTTGCCTTGATGACAGCGCTTTCTTGATATTCATGAC
GTAATCTTTTGTACGGAAACACCCGAAAAACACCGGGCGTTTGCTATCAG
TTTTGAATTTATATAACTAAACTGGTGGTAAACGCCCGGTGTTTTTCGGG
TGTTTCCGTATAAAATTTTACGTCGTGAATATCAAGAATAATGTAAGGCG
TCCTTGATAATCAAGAGATAGAACAGGTAGATACAAAAGTTATTTTACAT
TTTTTACTAGAATCCTAGCAAGTATAATTGTAGTAAACTTTTTGTACAAA
AATGTTCCTTTTTACCACATTCTACTTTTTTGTTTGTGGTGATCGCAATA
TTGTAGGTCATCAAATGTAAAATTTCTTTACAATATAATGTACATAAAAA
GTTATGGATTAAAAAACATTATGTTCCCATATTTGTTAAAAACAAAAATC
GTCTACGGAGTAAAAATTTAAGAAATCATTTTGCAGGGATTTTTGAGTTC
GTGTTTCGACTGGCTAACTTAAAAAAAAACTTAAAACGTTTTTACGCAAC
TAACGGAGGTACAAAGAGTTTCGAATATTCAAACAAGTAGGTCCAAGCTT
TAAGAATATAAGGTTTTAAAACTAGAACCAAATCTTATATTAACGAGAAT
TGTTTCGAAATTTTATATCTCGACAAATGTGGGTCCAATACATACGTGAT
CTTTTTTCGTTAGACTCGAAAACAAAATTTCGAGAATCCTTTAGCGGTAA
AATTTACCAAAAATTTAACTCCTTTTGAAATGGCCGGTATTTGGTCTTTT
CCATTCTTCCTTACCATCATTTCCAAGACTTGGCGAAGTGGCAACCATGC
TTTCAATGGCCGGTCAGTATAAGCACTTTGATTGGATGATGATTTTGGCA
ACAGTTTGGATGGCAAGCGCCGATCAATCAATTGACAGCTGAAACATTCT
CCGCGTAACGTCACCACATGAACATTATCATTTCTTCAAAGTGTTGCTAT
GACGAAACCGTAAAAATAATAAAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041059XLOC_041059Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065519-exon-scaffold_44-1575043694:336236..336578TCONS_00065519-exon-scaffold_44-1575043694:336236..336578Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1575043694:336068..336095TCONS_00065519-exon-scaffold_44-1575043694:336068..336095Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1575043694:335692..335835TCONS_00065519-exon-scaffold_44-1575043694:335692..335835Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1575043694:334195..334431TCONS_00065519-exon-scaffold_44-1575043694:334195..334431Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1575043694:332001..333804TCONS_00065519-exon-scaffold_44-1575043694:332001..333804Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1510915933:336236..336578TCONS_00065519-exon-scaffold_44-1510915933:336236..336578Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1510915933:336068..336095TCONS_00065519-exon-scaffold_44-1510915933:336068..336095Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1510915933:335692..335835TCONS_00065519-exon-scaffold_44-1510915933:335692..335835Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1510915933:334195..334431TCONS_00065519-exon-scaffold_44-1510915933:334195..334431Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1510915933:332001..333804TCONS_00065519-exon-scaffold_44-1510915933:332001..333804Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1491911889:336236..336578TCONS_00065519-exon-scaffold_44-1491911889:336236..336578Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1491911889:336068..336095TCONS_00065519-exon-scaffold_44-1491911889:336068..336095Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1491911889:335692..335835TCONS_00065519-exon-scaffold_44-1491911889:335692..335835Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1491911889:334195..334431TCONS_00065519-exon-scaffold_44-1491911889:334195..334431Clytia hemisphaericaexon
TCONS_00065519-exon-scaffold_44-1491911889:332001..333804TCONS_00065519-exon-scaffold_44-1491911889:332001..333804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:332001..336578 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0689536	0	39.2466	31.494	38.6791	39.0076	21.7857	14.8116	13.9318	12.7366	1.55164	0.569923	0.354145	0.324677	1.88006	2.85236	3.15676	4.70885	3.21867	3.19059	1.4668	1.3541	1.38813	1.56932	1.37088	0.634198	0.0789067	0.0792461
Blast
[Close]
BLAST of TCONS_00065519 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.783e-23
Identity = 53/145 (36.55%), Postives = 88/145 (60.69%), Query Frame = 2 
Query:  344 NSVTSKQYEELKNAFIAFDRNCDGFIDSEDLGYVMGKLGHDLSSKEVKKVFKDICKHSNGKMDFTDFVEMMAQDKLVLTTSEQEILAAFQFLDQNHDGYITIDEL---LQRFHGCLSDTEASRLMCEADANGDGKIDFNEFKHMM 769
            + +T +Q  E K AF  FD++ DG I +++LG VM  LG + +  E++ +  ++    NG +DF +F+ MMA+ K+  T SE+EI  AF+  D++ +GYI+  EL   +      L+D E   ++ EAD +GDG++++ EF  MM
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMAR-KMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
BLAST of TCONS_00065519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM38.783e-2336.55Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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