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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065516 ID=TCONS_00065516|Name=TCONS_00065516|organism=Clytia hemisphaerica|type=transcript|length=620bp
CTGCaaagaaacaaaataatattCCATTCAGTCAGGTCTAACTGTGGCAT
ATTTAGACCACAGAGTATACTACAACCTCTTATTACACTAAGATATTTGA
CTCGGATTACATGGTAGTATACTTGCTAAGTGATGGATGTTGTATGTGTG
CTAAGTGTGGTGATTTTCTCAgTTACAACGCATACTACAACGGGAAAGCa
cacaacaacgaccaccaagcctccaacaacaacaacaacaacaacaacca
caacaacaaccaccCAGCCCCAGACAACTGTTATAATCACCTATTCACCA
CACGATTGCATTGAAAATAGTCCATATCTGGTCAATGGAACGGGTTTATC
TGCCACTGGATCGCAAACAGTATTGATAGGTGTCGGGAGCAATACGTTGC
CTGAATGCTCAATTTTATGTAAAAATCTGTCCATGTCCGCAAATAACTCA
CGAATTAATGCAGCTATACTCATCAAGGAAAATGGAAGTTGTTTATGTCA
GCAGAATGTCATTATTGTTGATTCCAATACAATATTATACAGTACATGTA
TCTTTAAAGAAGCAGAAGACACAGGGTTGTTCTATGAAAGTAAGTTAGTT
TTTCACGTGCCACCATTAAA Run BLAST on NCBI transcript from alignment at scaffold_44:246026..247770- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065516 ID=TCONS_00065516|Name=TCONS_00065516|organism=Clytia hemisphaerica|type=transcript|length=1745bp|location=Sequence derived from alignment at scaffold_44:246026..247770- (Clytia hemisphaerica)
CTGCAAAGAAACAAAATAATATTCCATTCAGTCAGGTCTAACTGTGGCAT
ATTTAGACCACAGAGTATACTACAACCTCTTATTACACTAAGATATTTGA
CTCGGATTACATGGTAGTATACTTGCTAAGTGATGGATGTTGTATGTGTG
CTAAGTGTGGTGATTTTCTCAGGTAACAAAAACTTTTTTTGGAGTTGATT
TAGGTGTCTTTTTTATTTAGAATTACCTCTAATCAATAATATTTAAGATA
TTTGGGATATAAATATTTCCAGCAAAGGGTAGCTGCTAAAAATCACAATT
AAAATGGACTAGCCTGATATGTGTTTTGATTTTCAGGATGCTGCTGAGGC
TACTCCAACTCTTAAACTACTTGAAGTACGTAATCCTTTTACACCAATAC
CAATAACAGTAACACCTAGAATTGAAAACCCCTTTACAGTTACAACGCAT
ACTACAACGGGAAAGCACACAACAACGACCACCAAGCCTCCAACAACAAC
AACAACAACAACAACCACAACAACAACCACCCAGCCCCAGACAACTGTTA
TAATCACCTATTCACCACACGGTAATGATGTATCATTGAATTGAACAATT
CTTTGCTATCATCTTTTTTTGTCATCTATACAGTTTGTCTGAAAAAAGTA
GAACAGAGTTGTTTTCTCAAGCTTTGATACTGTTTCATTTTTAAAACTTA
ATTTTAGAGAGGAGCTGTACGCATTTGTTTATGAGTGTGTATGAGAATGA
TTTTTGTAGATATGGATTTTGACTGTTTTGAATGTTTTAACGTCATTTCT
TTTAGAGCTGGAGATGATATTTTTAGTCTGAAATATGCCGGGTGGTAAAA
AAAAACTTAGGATGTTATCCTAAGTATTTTAAATGGCTTTAAAGCTATCA
AAGTGATCTGTAAGGTTGATTTATTAAAATTAGGGCTGGTCTAACTTAAA
TTTTGATGTGTTACTTTTTACATTTGGACAATTGATTTATAGCCTTATAA
ATATATTTTTTTCATAAACAAAAACTGAAATTGTGTTTAAGATATTTCTA
TTTCAGCTCCATTTTATCTCTTTCTCATCATTCATGTTGATCCATTTTGC
TCAAAGGCCTTACCAAACATCCGAAGTTTATTTTTGGACCACGCGGTATA
GTCAAAATAAAATGGTTTAAGTTGTCGGCTCAATGTTATCTGATAAAATC
TTTTGATCATATCCCCAGTTTTTAAAATATATTAATCAAAAACCTTTAAA
TCCAATTTGACTTCCTGTCTTACTCACTAGGCTGCACTAACAAATAACTA
TTTACACGCAAAATCAAAATTTATACAATACAAGGAATATCTAAATAGAA
ACAGTATTAGTAAAGTAAAAATATTTGGCATTAGGTGAGACTTATATTGA
AATAACTATTTATAACTTTTATCTAACAGATTGCATTGAAAATAGTCCAT
ATCTGGTCAATGGAACGGGTTTATCTGCCACTGGATCGCAAACAGTATTG
ATAGGTGTCGGGAGCAATACGTTGCCTGAATGCTCAATTTTATGTAAAAA
TCTGTCCATGTCCGCAAATAACTCACGAATTAATGCAGCTATACTCATCA
AGGAAAATGGAAGTTGTTTATGTCAGCAGAATGTCATTATTGTTGATTCC
AATACAATATTATACAGTACATGTATCTTTAAAGAAGCAGAAGACACAGG
GTTGTTCTATGAAAGTAAGTTAGTTTTTCACGTGCCACCATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065516-exon-scaffold_44-1575043694:247599..247770 | TCONS_00065516-exon-scaffold_44-1575043694:247599..247770 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1575043694:247200..247331 | TCONS_00065516-exon-scaffold_44-1575043694:247200..247331 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1575043694:246026..246341 | TCONS_00065516-exon-scaffold_44-1575043694:246026..246341 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1510915933:247599..247770 | TCONS_00065516-exon-scaffold_44-1510915933:247599..247770 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1510915933:247200..247331 | TCONS_00065516-exon-scaffold_44-1510915933:247200..247331 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1510915933:246026..246341 | TCONS_00065516-exon-scaffold_44-1510915933:246026..246341 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1491911889:247599..247770 | TCONS_00065516-exon-scaffold_44-1491911889:247599..247770 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1491911889:247200..247331 | TCONS_00065516-exon-scaffold_44-1491911889:247200..247331 | Clytia hemisphaerica | exon |
| TCONS_00065516-exon-scaffold_44-1491911889:246026..246341 | TCONS_00065516-exon-scaffold_44-1491911889:246026..246341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:246026..247770 - |
Blast
The following BLAST results are available for this feature:
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