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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065515 ID=TCONS_00065515|Name=TCONS_00065515|organism=Clytia hemisphaerica|type=transcript|length=637bp
ACTAAGATATTTGACTCGGATTACATGGTAGTATACTTGCTAAGTGATGG
ATGTTGTATGTGTGCTAAGTGTGGTGATTTTCTCAgGATGCTGCTGAGGC
TACTCCAACTCTTAAACTACTTGAAGTACGTAATCCTTTTACACCAATAC
CAATAACAGTAACACCTAGAATTGAAAACCCCTTTACAGTTACAACGCAT
ACTACAACGGGAAAGCacacaacaacgaccaccaagcctccaacaacaac
aacaacaacaacaaccacaacaacaaccaccCAGCCCCAGACAACTGTTA
TAATCACCTATTCACCACACGATTGCATTGAAAATAGTCCATATCTGGTC
AATGGAACGGGTTTATCTGCCACTGGATCGCAAACAGTATTGATAGGTGT
CGGGAGCAATACGTTGCCTGAATGCTCAATTTTATGTAAAAATCTGTCCA
TGTCCGCAAATAACTCACGAATTAATGCAGCTATACTCATCAAGGAAAAT
GGAAGTTGTTTATGTCAGCAGAATGTCATTATTGTTGATTCCAATACAAT
ATTATACAGTACATGTATCTTTAAAGAAGCAGAAGACACAGGGTTGTTCT
ATGAAAGTAAGTTAGTTTTTCACGTGCCACCATTAAA Run BLAST on NCBI transcript from alignment at scaffold_44:246026..247684- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065515 ID=TCONS_00065515|Name=TCONS_00065515|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at scaffold_44:246026..247684- (Clytia hemisphaerica)
ACTAAGATATTTGACTCGGATTACATGGTAGTATACTTGCTAAGTGATGG
ATGTTGTATGTGTGCTAAGTGTGGTGATTTTCTCAGGTAACAAAAACTTT
TTTTGGAGTTGATTTAGGTGTCTTTTTTATTTAGAATTACCTCTAATCAA
TAATATTTAAGATATTTGGGATATAAATATTTCCAGCAAAGGGTAGCTGC
TAAAAATCACAATTAAAATGGACTAGCCTGATATGTGTTTTGATTTTCAG
GATGCTGCTGAGGCTACTCCAACTCTTAAACTACTTGAAGTACGTAATCC
TTTTACACCAATACCAATAACAGTAACACCTAGAATTGAAAACCCCTTTA
CAGTTACAACGCATACTACAACGGGAAAGCACACAACAACGACCACCAAG
CCTCCAACAACAACAACAACAACAACAACCACAACAACAACCACCCAGCC
CCAGACAACTGTTATAATCACCTATTCACCACACGGTAATGATGTATCAT
TGAATTGAACAATTCTTTGCTATCATCTTTTTTTGTCATCTATACAGTTT
GTCTGAAAAAAGTAGAACAGAGTTGTTTTCTCAAGCTTTGATACTGTTTC
ATTTTTAAAACTTAATTTTAGAGAGGAGCTGTACGCATTTGTTTATGAGT
GTGTATGAGAATGATTTTTGTAGATATGGATTTTGACTGTTTTGAATGTT
TTAACGTCATTTCTTTTAGAGCTGGAGATGATATTTTTAGTCTGAAATAT
GCCGGGTGGTAAAAAAAAACTTAGGATGTTATCCTAAGTATTTTAAATGG
CTTTAAAGCTATCAAAGTGATCTGTAAGGTTGATTTATTAAAATTAGGGC
TGGTCTAACTTAAATTTTGATGTGTTACTTTTTACATTTGGACAATTGAT
TTATAGCCTTATAAATATATTTTTTTCATAAACAAAAACTGAAATTGTGT
TTAAGATATTTCTATTTCAGCTCCATTTTATCTCTTTCTCATCATTCATG
TTGATCCATTTTGCTCAAAGGCCTTACCAAACATCCGAAGTTTATTTTTG
GACCACGCGGTATAGTCAAAATAAAATGGTTTAAGTTGTCGGCTCAATGT
TATCTGATAAAATCTTTTGATCATATCCCCAGTTTTTAAAATATATTAAT
CAAAAACCTTTAAATCCAATTTGACTTCCTGTCTTACTCACTAGGCTGCA
CTAACAAATAACTATTTACACGCAAAATCAAAATTTATACAATACAAGGA
ATATCTAAATAGAAACAGTATTAGTAAAGTAAAAATATTTGGCATTAGGT
GAGACTTATATTGAAATAACTATTTATAACTTTTATCTAACAGATTGCAT
TGAAAATAGTCCATATCTGGTCAATGGAACGGGTTTATCTGCCACTGGAT
CGCAAACAGTATTGATAGGTGTCGGGAGCAATACGTTGCCTGAATGCTCA
ATTTTATGTAAAAATCTGTCCATGTCCGCAAATAACTCACGAATTAATGC
AGCTATACTCATCAAGGAAAATGGAAGTTGTTTATGTCAGCAGAATGTCA
TTATTGTTGATTCCAATACAATATTATACAGTACATGTATCTTTAAAGAA
GCAGAAGACACAGGGTTGTTCTATGAAAGTAAGTTAGTTTTTCACGTGCC
ACCATTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065515-exon-scaffold_44-1575043694:247599..247684 | TCONS_00065515-exon-scaffold_44-1575043694:247599..247684 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1575043694:247200..247434 | TCONS_00065515-exon-scaffold_44-1575043694:247200..247434 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1575043694:246026..246341 | TCONS_00065515-exon-scaffold_44-1575043694:246026..246341 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1510915933:247599..247684 | TCONS_00065515-exon-scaffold_44-1510915933:247599..247684 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1510915933:247200..247434 | TCONS_00065515-exon-scaffold_44-1510915933:247200..247434 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1510915933:246026..246341 | TCONS_00065515-exon-scaffold_44-1510915933:246026..246341 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1491911889:247599..247684 | TCONS_00065515-exon-scaffold_44-1491911889:247599..247684 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1491911889:247200..247434 | TCONS_00065515-exon-scaffold_44-1491911889:247200..247434 | Clytia hemisphaerica | exon |
| TCONS_00065515-exon-scaffold_44-1491911889:246026..246341 | TCONS_00065515-exon-scaffold_44-1491911889:246026..246341 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:246026..247684 - |
Blast
The following BLAST results are available for this feature:
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