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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065514 ID=TCONS_00065514|Name=TCONS_00065514|organism=Clytia hemisphaerica|type=transcript|length=1120bp
taaaaatgaaaattgtgttgtttttaaaaaccttattttttgcTTCCTCT
CTTCTTAGGATAAAAAGTAAGAAATGTCACAATCTGCACAAACATTTCAG
CCACCCAAATCATGGGAGTTGAGCTTATATGAATTACATCGTACTCCACA
AGAAGCAATAACAGATGATACAGAGATAGTGTTGTCACCAAGAAGTCTTC
ACAGTGAATTAATGTGTCCCATTTGTTTGGATATGTTAACTACAACAATG
ACCACCAAAGAATGCCTTCATAGGTTTTGTCATGATTGTATTATCACTGC
ATTGAGAGCTGGTAACAAAGAATGCCCTACTTGTCGAAAGAAATTGATTT
CGAAACGATCTTTGAGAAGGGATCCAAATTTTGATTCTCTCATCGaaaag
ATCTACCCTAATCGTGACGAATATGATGCACAGCAAGAACAAGTGCTTGA
GAAACTCAATCAACACACCAATCAACAGGCTTTAACCAACAGTATCGAGG
AAGGGTTGCGACTTCAAGCACAGAATCGTTTGCAAAGGATGTTgaagcaa
caacaaaagaaagcaGCGGAGGCGCTAGCTGCTCAACAGGCTTCAAATGC
TCAAGAAGAACAAGCCCCTCCACCCGACGAACAACCTTCAACCTCATCAA
ACCAACAAACAAAAGACGAAAAACCGAGTTCCCCAGCTACACCGTCCGCG
TCAAAAACGAACAAGCGAAAAGCTGTCAAAGAAAAACTACCAAAGCAAAT
CTCAACTGAGGACGAAAATTCGAATAGTGCAACTAGTGTAGAAACTATTG
AAACATTCATAGATGATATTGAACTAATTTTCCACCCACATCCAGATTTT
CCGCATTACACTTCACGCTATATCAAAACAACAGGGAACGCTACGATGGC
TCACTTGTCACATTTTCTCATCATTCGAGCACGCTTAGATCGTGAACAAC
AAGAAGCTACAGAATGCgatcattttaaaatctttgctttgaCAGACACT
CATGATTACCATGAACTAGAAGACTCGATGACTTTGGGAGACGCGTTCGC
TATTCATTGGCGCGAAAACAAACCATTAGAACTGTTCTTCTCGCCTATTT
ATTAGTGAAGGCAGTAGAAT Run BLAST on NCBI protein sequence of TCONS_00065514-protein >TCONS_00065514-protein ID=TCONS_00065514-protein|Name=TCONS_00065514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MSQSAQTFQPPKSWELSLYELHRTPQEAITDDTEIVLSPRSLHSELMCPI
CLDMLTTTMTTKECLHRFCHDCIITALRAGNKECPTCRKKLISKRSLRRD
PNFDSLIEKIYPNRDEYDAQQEQVLEKLNQHTNQQALTNSIEEGLRLQAQ
NRLQRMLKQQQKKAAEALAAQQASNAQEEQAPPPDEQPSTSSNQQTKDEK
PSSPATPSASKTNKRKAVKEKLPKQISTEDENSNSATSVETIETFIDDIE
LIFHPHPDFPHYTSRYIKTTGNATMAHLSHFLIIRARLDREQQEATECDH
FKIFALTDTHDYHELEDSMTLGDAFAIHWRENKPLELFFSPIY Run BLAST on NCBI transcript from alignment at scaffold_44:238141..240520- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065514 ID=TCONS_00065514|Name=TCONS_00065514|organism=Clytia hemisphaerica|type=transcript|length=2380bp|location=Sequence derived from alignment at scaffold_44:238141..240520- (Clytia hemisphaerica)
TAAAAATGAAAATTGTGTTGTTTTTAAAAACCTTATTTTTTGCTTCCTCT
CTTCTTAGGATAAAAAGTAAGAAATGTCACAATCTGCACAAACATTTCAG
CCACCCAAATCATGGGAGTTGAGCTTATATGAATTACATCGTACTCCACA
AGAAGCAATAACAGATGATACAGAGATAGTGTTGTCACCAAGAAGTCTTC
ACAGTGAATTAATGTGTCCCATTTGTTTGGATATGTTAACTACAACAATG
ACCACCAAAGAATGCCTTCATAGGTTTTGTCATGATTGTATTATCACTGC
ATTGAGAGCTGGTAACAAAGAATGCCCTACTTGTCGAAAGAAATTGATTT
CGAAACGATCTTTGAGAAGGGATCCAAATTTTGATTCTCTCATCGAAAAG
GTATTTTTTTTCATTATGTATATGAGAAGATGAAGAAAATACTTTTTGAG
AATTTAGTAATTTATTTAGGAATTCGATAAGATGCTATTTACCATCAGTA
GATTTCATCAGGAGAATCATTTTACTTCCAAGACAACTTTCAACTTTTTG
CTTGGCTCAGATATAAAAACCTTTCATTTATGTTACAGATCTACCCTAAT
CGTGACGAATATGATGCACAGCAAGAACAAGTGCTTGAGAAACTCAATCA
ACACACCAATCAACAGGCTTTAACCAACAGTATCGAGGAAGGTAATCCAC
TATTTATAATAAAGGCTTTAAAGATCTCAAAGAATCGCATTTCAGGACTT
GTTTTTAAATATTTATTTCCTTCATGTTCTTTGTTTTTTGGATAATTATT
CTCATCTCAAACGAGAACCGTGGACTTTTTAATATTTTTGCTATAATGAG
CGAAAGCCTTACCTTTTGTTTAAAATCGATTTAATACTCAGAAAATAATA
TTTGAGAGACAAAGAAATTATTACGCTTCTTTTACAATGACTCTAATAGG
GGGGGGGTTTCAGGGGGTACCCGATTCCGCAATTCCGTCAATTTTTTCTC
CAATTTCCGTCAAACCGTCTTAAATTGAACCAAAATTCCGTCNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAGTCGTGCAAGGAG
CTCTGGATACGAGATTGGAATAACGGTTTTCTAACACTTTGACATCATAA
TTTTCCAGGGTTGCGACTTCAAGCACAGAATCGTTTGCAAAGGATGTTGA
AGCAACAACAAAAGAAAGCAGCGGAGGCGCTAGCTGCTCAACAGGCTTCA
AATGCTCAAGAAGAACAAGGTGGGATTAGTTTCTAGTCTAAATGACCCAT
TATCAATATCAATTATTTCAAGATCGTGAGCATTTGATCAATTACGTGAT
TTTGAACGATGATATATTTCTGTCTCACCCATTCTTATAAACTTAATAAC
AACTAGATATTCTATCTTTGACAGCCCCTCCACCCGACGAACAACCTTCA
ACCTCATCAAACCAACAAACAAAAGACGAAAAACCGAGTTCCCCAGCTAC
ACCGTCCGCGTCAAAAACGAACAAGCGAAAAGCTGTCAAAGAAAAACTAC
CAAAGCAAATCTCAACTGAGGACGAAAATTCGAATAGTGCAACTAGTGTA
GAAACTATTGAAACATTCATAGATGATATTGAACTAATTTTCCACCCACA
TCCAGATTTTCCGCATTACACTTCACGCTATATCAAAACAACAGGGAACG
CTACGATGGCTCACTTGTCACATTTTCTCATCATTCGAGCACGCTTAGAT
CGTGAACAACAAGAAGCTACAGAATGCGATCATTTTAAAATCTTTGCTTT
GACAGACACTCATGATTACCATGAACTAGAAGACTCGATGACTTTGGGAG
ACGCGTTCGCTATTCATTGGCGCGAAAACAAACCATTAGAACTGTTCTTC
TCGCCTATTTATTAGTGAAGGCAGTAGAAT Coding sequence (CDS) from alignment at scaffold_44:238141..240520- >TCONS_00065514 ID=TCONS_00065514|Name=TCONS_00065514|organism=Clytia hemisphaerica|type=CDS|length=4128bp|location=Sequence derived from alignment at scaffold_44:238141..240520- (Clytia hemisphaerica)
CCCCTCCACCCGACGAACAACCTTCAACCTCATCAAACCAACAAACAAAA
GACGAAAAACCGAGTTCCCCAGCTACACCGTCCGCGTCAAAAACGAACAA
GCGAAAAGCTGTCAAAGAAAAACTACCAAAGCAAATCTCAACTGAGGACG
AAAATTCGAATAGTGCAACTAGTGTAGAAACTATTGAAACATTCATAGAT
GATATTGAACTAATTTTCCACCCACATCCAGATTTTCCGCATTACACTTC
ACGCTATATCAAAACAACAGGGAACGCTACGATGGCTCACTTGTCACATT
TTCTCATCATTCGAGCACGCTTAGATCGTGAACAACAAGAAGCTACAGAA
TGCGATCATTTTAAAATCTTTGCTTTGACAGACACTCATGATTACCATGA
ACTAGAAGACTCGATGACTTTGGGAGACGCGTTCGCTATTCATTGGCGCG
AAAACAAACCATTAGAACTGTTCTTCTCGCCTATTTATTAGGGTTGCGAC
TTCAAGCACAGAATCGTTTGCAAAGGATGTTGAAGCAACAACAAAAGAAA
GCAGCGGAGGCGCTAGCTGCTCAACAGGCTTCAAATGCTCAAGAAGAACA
AGATCTACCCTAATCGTGACGAATATGATGCACAGCAAGAACAAGTGCTT
GAGAAACTCAATCAACACACCAATCAACAGGCTTTAACCAACAGTATCGA
GGAAGATGTCACAATCTGCACAAACATTTCAGCCACCCAAATCATGGGAG
TTGAGCTTATATGAATTACATCGTACTCCACAAGAAGCAATAACAGATGA
TACAGAGATAGTGTTGTCACCAAGAAGTCTTCACAGTGAATTAATGTGTC
CCATTTGTTTGGATATGTTAACTACAACAATGACCACCAAAGAATGCCTT
CATAGGTTTTGTCATGATTGTATTATCACTGCATTGAGAGCTGGTAACAA
AGAATGCCCTACTTGTCGAAAGAAATTGATTTCGAAACGATCTTTGAGAA
GGGATCCAAATTTTGATTCTCTCATCGAAAAGCCCCTCCACCCGACGAAC
AACCTTCAACCTCATCAAACCAACAAACAAAAGACGAAAAACCGAGTTCC
CCAGCTACACCGTCCGCGTCAAAAACGAACAAGCGAAAAGCTGTCAAAGA
AAAACTACCAAAGCAAATCTCAACTGAGGACGAAAATTCGAATAGTGCAA
CTAGTGTAGAAACTATTGAAACATTCATAGATGATATTGAACTAATTTTC
CACCCACATCCAGATTTTCCGCATTACACTTCACGCTATATCAAAACAAC
AGGGAACGCTACGATGGCTCACTTGTCACATTTTCTCATCATTCGAGCAC
GCTTAGATCGTGAACAACAAGAAGCTACAGAATGCGATCATTTTAAAATC
TTTGCTTTGACAGACACTCATGATTACCATGAACTAGAAGACTCGATGAC
TTTGGGAGACGCGTTCGCTATTCATTGGCGCGAAAACAAACCATTAGAAC
TGTTCTTCTCGCCTATTTATTAGGGTTGCGACTTCAAGCACAGAATCGTT
TGCAAAGGATGTTGAAGCAACAACAAAAGAAAGCAGCGGAGGCGCTAGCT
GCTCAACAGGCTTCAAATGCTCAAGAAGAACAAGATCTACCCTAATCGTG
ACGAATATGATGCACAGCAAGAACAAGTGCTTGAGAAACTCAATCAACAC
ACCAATCAACAGGCTTTAACCAACAGTATCGAGGAAGATGTCACAATCTG
CACAAACATTTCAGCCACCCAAATCATGGGAGTTGAGCTTATATGAATTA
CATCGTACTCCACAAGAAGCAATAACAGATGATACAGAGATAGTGTTGTC
ACCAAGAAGTCTTCACAGTGAATTAATGTGTCCCATTTGTTTGGATATGT
TAACTACAACAATGACCACCAAAGAATGCCTTCATAGGTTTTGTCATGAT
TGTATTATCACTGCATTGAGAGCTGGTAACAAAGAATGCCCTACTTGTCG
AAAGAAATTGATTTCGAAACGATCTTTGAGAAGGGATCCAAATTTTGATT
CTCTCATCGAAAAGCCCCTCCACCCGACGAACAACCTTCAACCTCATCAA
ACCAACAAACAAAAGACGAAAAACCGAGTTCCCCAGCTACACCGTCCGCG
TCAAAAACGAACAAGCGAAAAGCTGTCAAAGAAAAACTACCAAAGCAAAT
CTCAACTGAGGACGAAAATTCGAATAGTGCAACTAGTGTAGAAACTATTG
AAACATTCATAGATGATATTGAACTAATTTTCCACCCACATCCAGATTTT
CCGCATTACACTTCACGCTATATCAAAACAACAGGGAACGCTACGATGGC
TCACTTGTCACATTTTCTCATCATTCGAGCACGCTTAGATCGTGAACAAC
AAGAAGCTACAGAATGCGATCATTTTAAAATCTTTGCTTTGACAGACACT
CATGATTACCATGAACTAGAAGACTCGATGACTTTGGGAGACGCGTTCGC
TATTCATTGGCGCGAAAACAAACCATTAGAACTGTTCTTCTCGCCTATTT
ATTAGGGTTGCGACTTCAAGCACAGAATCGTTTGCAAAGGATGTTGAAGC
AACAACAAAAGAAAGCAGCGGAGGCGCTAGCTGCTCAACAGGCTTCAAAT
GCTCAAGAAGAACAAGATCTACCCTAATCGTGACGAATATGATGCACAGC
AAGAACAAGTGCTTGAGAAACTCAATCAACACACCAATCAACAGGCTTTA
ACCAACAGTATCGAGGAAGATGTCACAATCTGCACAAACATTTCAGCCAC
CCAAATCATGGGAGTTGAGCTTATATGAATTACATCGTACTCCACAAGAA
GCAATAACAGATGATACAGAGATAGTGTTGTCACCAAGAAGTCTTCACAG
TGAATTAATGTGTCCCATTTGTTTGGATATGTTAACTACAACAATGACCA
CCAAAGAATGCCTTCATAGGTTTTGTCATGATTGTATTATCACTGCATTG
AGAGCTGGTAACAAAGAATGCCCTACTTGTCGAAAGAAATTGATTTCGAA
ACGATCTTTGAGAAGGGATCCAAATTTTGATTCTCTCATCGAAAAGCCCC
TCCACCCGACGAACAACCTTCAACCTCATCAAACCAACAAACAAAAGACG
AAAAACCGAGTTCCCCAGCTACACCGTCCGCGTCAAAAACGAACAAGCGA
AAAGCTGTCAAAGAAAAACTACCAAAGCAAATCTCAACTGAGGACGAAAA
TTCGAATAGTGCAACTAGTGTAGAAACTATTGAAACATTCATAGATGATA
TTGAACTAATTTTCCACCCACATCCAGATTTTCCGCATTACACTTCACGC
TATATCAAAACAACAGGGAACGCTACGATGGCTCACTTGTCACATTTTCT
CATCATTCGAGCACGCTTAGATCGTGAACAACAAGAAGCTACAGAATGCG
ATCATTTTAAAATCTTTGCTTTGACAGACACTCATGATTACCATGAACTA
GAAGACTCGATGACTTTGGGAGACGCGTTCGCTATTCATTGGCGCGAAAA
CAAACCATTAGAACTGTTCTTCTCGCCTATTTATTAGGGTTGCGACTTCA
AGCACAGAATCGTTTGCAAAGGATGTTGAAGCAACAACAAAAGAAAGCAG
CGGAGGCGCTAGCTGCTCAACAGGCTTCAAATGCTCAAGAAGAACAAGAT
CTACCCTAATCGTGACGAATATGATGCACAGCAAGAACAAGTGCTTGAGA
AACTCAATCAACACACCAATCAACAGGCTTTAACCAACAGTATCGAGGAA
GATGTCACAATCTGCACAAACATTTCAGCCACCCAAATCATGGGAGTTGA
GCTTATATGAATTACATCGTACTCCACAAGAAGCAATAACAGATGATACA
GAGATAGTGTTGTCACCAAGAAGTCTTCACAGTGAATTAATGTGTCCCAT
TTGTTTGGATATGTTAACTACAACAATGACCACCAAAGAATGCCTTCATA
GGTTTTGTCATGATTGTATTATCACTGCATTGAGAGCTGGTAACAAAGAA
TGCCCTACTTGTCGAAAGAAATTGATTTCGAAACGATCTTTGAGAAGGGA
TCCAAATTTTGATTCTCTCATCGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00065514-exon-scaffold_44-1575043694:240121..240520 | TCONS_00065514-exon-scaffold_44-1575043694:240121..240520 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1575043694:239830..239932 | TCONS_00065514-exon-scaffold_44-1575043694:239830..239932 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1575043694:238802..238912 | TCONS_00065514-exon-scaffold_44-1575043694:238802..238912 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1575043694:238141..238646 | TCONS_00065514-exon-scaffold_44-1575043694:238141..238646 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1510915933:240121..240520 | TCONS_00065514-exon-scaffold_44-1510915933:240121..240520 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1510915933:239830..239932 | TCONS_00065514-exon-scaffold_44-1510915933:239830..239932 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1510915933:238802..238912 | TCONS_00065514-exon-scaffold_44-1510915933:238802..238912 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1510915933:238141..238646 | TCONS_00065514-exon-scaffold_44-1510915933:238141..238646 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1491911889:240121..240520 | TCONS_00065514-exon-scaffold_44-1491911889:240121..240520 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1491911889:239830..239932 | TCONS_00065514-exon-scaffold_44-1491911889:239830..239932 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1491911889:238802..238912 | TCONS_00065514-exon-scaffold_44-1491911889:238802..238912 | Clytia hemisphaerica | exon |
| TCONS_00065514-exon-scaffold_44-1491911889:238141..238646 | TCONS_00065514-exon-scaffold_44-1491911889:238141..238646 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:238141..240520 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00065514 vs. Swiss-Prot (Human)
Match: RING2 (E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1) HSP 1 Score: 293.123 bits (749), Expect = 6.830e-96 Identity = 175/357 (49.02%), Postives = 227/357 (63.59%), Query Frame = 2
Query: 74 MSQSAQT--FQP-PKSWELSLYELHRTPQEAITDDTEIVLSPRSLHSELMCPICLDMLTTTMTTKECLHRFCHDCIITALRAGNKECPTCXXXXXXXXXXXXDPNFDSLIEKIYPNRDEYDAQQEQVLEKLNQHTNQQALTNSIEEGLRLQAQNRLQRMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTSSNQQTKDEXXXXXXXXXXXXXNKRKAVKEKLPKQISTEDENSNSATSVETIETFIDDIELIFHPHPDF----PHYTSRYIKTTGNATMAHLSHFLIIRARLD--REQQEATECD-------HFKIFALTDTHDYHELEDSMTLGDAFAIHWRENKPLELFFSP 1096
MSQ+ QT QP K+WELSLYEL RTPQEAITD EIV+SPRSLHSELMCPICLDML TMTTKECLHRFC DCIITALR+GNKECPTCRKKL+SKRSLR DPNFD+LI KIYP+RDEY+A QE+VL ++N+H NQQAL++SIEEGL++QA NRLQR + + S A++ ST SNQ+ +NKR K E +N+N+A +++ + +IEL+F PHP +RYIKT+GNAT+ HLS +L +R L+ R + E+ + + + I+ T + + L S +L +W+ NKP+EL+++P
Sbjct: 1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQR---------GKKQQIENGSGAEDNGDSSHCSNASTHSNQEAG-------------PSNKRT----KTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAP 331
The following BLAST results are available for this feature:
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