TCONS_00065514-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065514-protein
Unique NameTCONS_00065514-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length343

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065514-protein ID=TCONS_00065514-protein|Name=TCONS_00065514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MSQSAQTFQPPKSWELSLYELHRTPQEAITDDTEIVLSPRSLHSELMCPI
CLDMLTTTMTTKECLHRFCHDCIITALRAGNKECPTCRKKLISKRSLRRD
PNFDSLIEKIYPNRDEYDAQQEQVLEKLNQHTNQQALTNSIEEGLRLQAQ
NRLQRMLKQQQKKAAEALAAQQASNAQEEQAPPPDEQPSTSSNQQTKDEK
PSSPATPSASKTNKRKAVKEKLPKQISTEDENSNSATSVETIETFIDDIE
LIFHPHPDFPHYTSRYIKTTGNATMAHLSHFLIIRARLDREQQEATECDH
FKIFALTDTHDYHELEDSMTLGDAFAIHWRENKPLELFFSPIY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_041056XLOC_041056Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065514TCONS_00065514Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR032443RAWUL
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 150..170
NoneNo IPR availableCOILSCoilCoilcoord: 114..134
NoneNo IPR availableGENE3D3.10.20.90coord: 208..340
e-value: 2.7E-10
score: 39.9
NoneNo IPR availablePFAMPF13923zf-C3HC4_2coord: 47..87
e-value: 2.3E-14
score: 52.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 156..239
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 40..112
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 48..87
e-value: 3.6E-7
score: 39.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 48..88
score: 12.312
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 47..91
e-value: 1.84287E-11
score: 57.4556
IPR032443RAWUL domainPFAMPF16207RAWULcoord: 265..340
e-value: 1.9E-15
score: 57.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 41..111
e-value: 4.8E-18
score: 64.1
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 64..73

Blast
[Close]
BLAST of TCONS_00065514-protein vs. Swiss-Prot (Human)
Match: RING2 (E3 ubiquitin-protein ligase RING2 OS=Homo sapiens GN=RNF2 PE=1 SV=1)

HSP 1 Score: 331.257 bits (848), Expect = 5.428e-113
Identity = 181/357 (50.70%), Postives = 231/357 (64.71%), Query Frame = 0 
Query:    1 MSQSAQT--FQP-PKSWELSLYELHRTPQEAITDDTEIVLSPRSLHSELMCPICLDMLTTTMTTKECLHRFCHDCIITALRAGNKECPTCRKKLISKRSLRRDPNFDSLIEKIYPNRDEYDAQQEQVLEKLNQHTNQQALTNSIEEGLRLQAQNRLQRMLKQQQKKAAEALAAQQASNAQEEQAPPPDEQPSTSSNQQTKDEKPSSPATPSASKTNKRKAVKEKLPKQISTEDENSNSATSVETIETFIDDIELIFHPHPDF----PHYTSRYIKTTGNATMAHLSHFLIIRARLD--REQQEATECD-------HFKIFALTDTHDYHELEDSMTLGDAFAIHWRENKPLELFFSP 341
            MSQ+ QT   QP  K+WELSLYEL RTPQEAITD  EIV+SPRSLHSELMCPICLDML  TMTTKECLHRFC DCIITALR+GNKECPTCRKKL+SKRSLR DPNFD+LI KIYP+RDEY+A QE+VL ++N+H NQQAL++SIEEGL++QA NRLQR  KQQ          +  S A++          ST SNQ+         A PS    NKR     K       E +N+N+A +++ +     +IEL+F PHP          +RYIKT+GNAT+ HLS +L +R  L+  R + E+ + +        + I+  T +  +  L  S +L      +W+ NKP+EL+++P
Sbjct:    1 MSQAVQTNGTQPLSKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPSRDEYEAHQERVLARINKHNNQQALSHSIEEGLKIQAMNRLQRGKKQQ---------IENGSGAEDNGDSSHCSNASTHSNQE---------AGPS----NKRT----KTSDDSGLELDNNNAAMAIDPVMDGASEIELVFRPHPTLMEKDDSAQTRYIKTSGNATVDHLSKYLAVRLALEELRSKGESNQMNLDTASEKQYTIYIATASGQFTVLNGSFSLELVSEKYWKVNKPMELYYAP 331
The following BLAST results are available for this feature:
BLAST of TCONS_00065514-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RING25.428e-11350.70E3 ubiquitin-protein ligase RING2 OS=Homo sapiens ... [more]
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