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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065508 ID=TCONS_00065508|Name=TCONS_00065508|organism=Clytia hemisphaerica|type=transcript|length=1663bp
CTAGCGAGTGGTTCATAGACAGTACAATGGCTTCAATTTGTCAACGTTGG
TTTGCACTGGTTCTTTTGTTGATGACGGTGGCCCAAGCTAAGCAGACAAT
TTGTCAAGGCAGCAACCACCTACAACAGAAATTTGCATATGAACCTACAc
tttcatttccatcaaaaaatTATCCACATCTTGCCATCAGCTATGACACA
ACATCAAAAGTATCCAAAATACTGGCGCCATCATCAAACTCGGCTTGGAA
GATAGTACCAGGGCTTTGTGGCCAAGGGTTCAGCTTTGAATCAACAACAC
AACCTAACCATTTCTTGAGACATAGAAACTTTCTCTTGTTCGTGGATCCC
TTTGAAAATATCGCCCTCTACAAGAATGACGCTTGCTTCAAACCCGTCGC
TGGTCTTGCCGATTGCAATGAAGTCTCGTTTCAATCGATCAACTATCCAG
ACCGTTTCTTACGACATCAAGGCTATCAAATGAAACTCCATCAAAATGAC
GGCTCTTCTTTGTTCAAGAATGATGCAACATTTAATATTCAGACAATTTG
TCAAGGCAGCGACCACCTACAACAGAAATTTGCATATGAACCTACActtt
catttccatcaaaaaatTATCCAAATCTTGCCATCAGCTATGACACAACA
TCAAAAGTATCCAAAATACTGGCACCATCATCAAACTCGGCTTGGAAGAT
AGTGCCAGGGCTTTGCGGCCAAGGGTTCAGCTTTGAATCAACAACTCAAC
CTAACCATTTCTTGAGACATCGACACCTTCTCTTGTTCGTGGATCCCTTT
GAAAATACCGCCCTTTACAAGAATGACGCTTGCTTCAAACCCGTCGCTGG
TCTTGCCGATTGCAATGAAGTCTCGTTTCAATCCATCAACTATCCAGACC
GTTTCTTGCGACATCAAGGCTATCGAATGAAACTCCATCAAAATGACGGC
TCGTCTCTGTTCAAGAATGATGCAACGTTtaatatttgaatttcaaattc
tttggGATAAAGACTCTTCTgtaactttttggacctaccccggtggaggt
cctataaattaaccgttgtatgttcgtccgttcgttagttaccagctttt
ctcgagattggctcattagttttttctgattttttgcacaaagatgcata
actataaaccctcgaatgtgacggagcctgattttcgagaaaaaaatttt
ttaggcaaatttgggccaaaaaattgctaaaaaacggtttttttggactt
tgtgaaaaattggattattaattttttctcattttttctatgaaagtagg
gtaccatcataggtaaaagatgggttaagcagatttttgctaaaaaaatt
ttttggctcaaaaaatgcatgtttatctataagaatcactattaataagc
atacatgttcttagtcaaattactcaattatttttatgagatagatgtat
tttttgctcatgagggcttacttttgaagaatatgtgtgtttagacatga
aatttagGCTGCTTggtgtgtttttatagaaaaactggcctaattcgata
tttttttataagcaggttatcaattacttaggtattagcttttctcgagg
ttggcgctttcattctttatgattttttgcacaaagatgcatagctataa
accctcgaatgtt Run BLAST on NCBI transcript from alignment at scaffold_44:201701..205050- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065508 ID=TCONS_00065508|Name=TCONS_00065508|organism=Clytia hemisphaerica|type=transcript|length=3350bp|location=Sequence derived from alignment at scaffold_44:201701..205050- (Clytia hemisphaerica)
CTAGCGAGTGGTTCATAGACAGTACAATGGCTTCAATTTGTCAACGTTGG
TTTGCACTGGTTCTTTTGTTGATGACGGTGGCCCAAGCTAAGCGTAAGTC
AGATTTTATTCAGTTTCAAAAATTCATCACCCCTTTGCATTAACACGTAA
TCGCCAATAAACTTTTTAGCTTATTTTGAGTTGTCTTGTCACATCCCTTA
CTGTGCAGTGGCCACAAACATATCATGCCATTTATTGAGGTATAAATATT
ATGCTTTTTTCATACAATAATTCAGAATTCGTTTAAACCATGATTCAAAT
CATATTTTAGAGACAATTTGTCAAGGCAGCAACCACCTACAACAGAAATT
TGCATATGAACCTACACTTTCATTTCCATCAAAAAATTATCCACATCTTG
CCATCAGCTATGACACAACATCAAAAGTATCCAAAATACTGGCGCCATCA
TCAAACTCGGCTTGGAAGATAGTACCAGGGCTTTGTGGCCAAGGGTTCAG
TTTTGAATCAACAACACAACCTAATCATTTCTTAAGACATCGAAACTTTC
TCTTGTTCGTGGATCCTTTTGAAAATACCGCCCTCTACAAAAACGACGCT
TGCTTCAAACCTGTTGCTGGTCTTGCCGATTGCAATGAAGTCTCGTTTCA
ATCGATCAACTATCCAGACCGTTTCTTGCGACATCAAGGCTATCGAATGA
AACTCCATCCAAATGACGGCTCGTCTCTGTTCAAGAATGATGCAACATTT
AATATTCGTAAGATTTAAAATATTATTGCAATTTCATCACTGTGTTTCTT
ATTAGAGCCCAAATCAGTCGGAAAAACATAATTCCAGGAATGAGTTAATA
AGTTCTTTTTTTGCAATATCAATGCATTATCATTTAAAATTTGCTCATAT
AATAATTCAAATCTTATTTCAGAGACAATTTGTCAAGGCAGCAACATTCT
ACAACAGAAATTTGCATATGAACCTACACTTTCATTTCCATCAAAAAATT
ATCCACATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCAAAATA
CTGGCGCCATCATCAAACTCGGCTTGGAAGATAGTACCAGGGCTTTGTGG
CCAAGGGTTCAGCTTTGAATCAACAACACAACCTAACCATTTCTTGAGAC
ATAGAAACTTTCTCTTGTTCGTGGATCCCTTTGAAAATATCGCCCTCTAC
AAGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGCAATGA
AGTCTCGTTTCAATCGATCAACTATCCAGACCGTTTCTTACGACATCAAG
GCTATCAAATGAAACTCCATCAAAATGACGGCTCTTCTTTGTTCAAGAAT
GATGCAACATTTAATATTCGTAAGATTTGAAATATTATTGCAGTTTCATC
TTCATTATACACTTGCGGGCTGCTGAACTTACCAATGGTTCGGAATCGAG
GGACTAATTCGCTAATACAGTGGACCTTTTTAATTCGAACTTCTTCTCAG
GTCCCGTCGCAAGGACAAACCTTCGTAAAATACTCTACCTATTATTGGAA
TCTCTCCGCAATTCGAACAGATTGGACTTTCTTCTCAAACTCGAGTTATT
GAGAGTCCCTCAAGAGTTAACAATATTAACATAGTTATCCTGTATACCTC
GACTGAATGAACATATATTTATCAACCAGGGTTCGGTAGTTTCGTAACCC
CTGCCCATGTAAAGCAATTCAATCAGAAAACTAAAAGTTTGAAGCCCTTA
GGGCCCTTGGCATTTACACGCGAGCAGGTTTTACCACCAATCAAGTTAGC
TTATATTTGTCAGGGCTAGCACGTTTATAGCCGAGCTCTTTTCAACAATT
GAAAATTTGATCCCGTTGAATCTCATCGAATATTTGACTAAGTGGGCGGC
ATTTTCAATTTTGCTTCAAATGCTCTAAAATTTTATACCAATGACGCAAG
ATTTTATGTAGTCTCCAAAATAAATACAATAAAAAAGTTTCTGTATCAAA
GGTCATGGCCCTTAGAAGCCGGTATTTCAACCCCTCCACAAGTTTACTCG
TATAGTCGGCAGAGAACATGTTAGCGAGGCCTCGTGAAAAATATTTATGA
CCTGCTTTCCATCATTAGACATGACTTGGAGTCGATTTGAACAGTTTGGG
GGTTTTTGAAATGTTTTTGGAGCCCTTTTAAAAGACAGGTTATGTGTATT
GTAATTCATATTCAAATCATATTTTAGAGACAATTTGTCAAGGCAGCGAC
CACCTACAACAGAAATTTGCATATGAACCTACACTTTCATTTCCATCAAA
AAATTATCCAAATCTTGCCATCAGCTATGACACAACATCAAAAGTATCCA
AAATACTGGCACCATCATCAAACTCGGCTTGGAAGATAGTGCCAGGGCTT
TGCGGCCAAGGGTTCAGCTTTGAATCAACAACTCAACCTAACCATTTCTT
GAGACATCGACACCTTCTCTTGTTCGTGGATCCCTTTGAAAATACCGCCC
TTTACAAGAATGACGCTTGCTTCAAACCCGTCGCTGGTCTTGCCGATTGC
AATGAAGTCTCGTTTCAATCCATCAACTATCCAGACCGTTTCTTGCGACA
TCAAGGCTATCGAATGAAACTCCATCAAAATGACGGCTCGTCTCTGTTCA
AGAATGATGCAACGTTTAATATTTGAATTTCAAATTCTTTGGGATAAAGA
CTCTTCTGTAACTTTTTGGACCTACCCCGGTGGAGGTCCTATAAATTAAC
CGTTGTATGTTCGTCCGTTCGTTAGTTACCAGCTTTTCTCGAGATTGGCT
CATTAGTTTTTTCTGATTTTTTGCACAAAGATGCATAACTATAAACCCTC
GAATGTGACGGAGCCTGATTTTCGAGAAAAAAATTTTTTAGGCAAATTTG
GGCCAAAAAATTGCTAAAAAACGGTTTTTTTGGACTTTGTGAAAAATTGG
ATTATTAATTTTTTCTCATTTTTTCTATGAAAGTAGGGTACCATCATAGG
TAAAAGATGGGTTAAGCAGATTTTTGCTAAAAAAATTTTTTGGCTCAAAA
AATGCATGTTTATCTATAAGAATCACTATTAATAAGCATACATGTTCTTA
GTCAAATTACTCAATTATTTTTATGAGATAGATGTATTTTTTGCTCATGA
GGGCTTACTTTTGAAGAATATGTGTGTTTAGACATGAAATTTAGGCTGCT
TGGTGTGTTTTTATAGAAAAACTGGCCTAATTCGATATTTTTTTATAAGC
AGGTTATCAATTACTTAGGTATTAGCTTTTCTCGAGGTTGGCGCTTTCAT
TCTTTATGATTTTTTGCACAAAGATGCATAGCTATAAACCCTCGAATGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065508-exon-scaffold_44-1575043694:204958..205050 | TCONS_00065508-exon-scaffold_44-1575043694:204958..205050 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1575043694:204657..204740 | TCONS_00065508-exon-scaffold_44-1575043694:204657..204740 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1575043694:203682..204044 | TCONS_00065508-exon-scaffold_44-1575043694:203682..204044 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1575043694:201701..202823 | TCONS_00065508-exon-scaffold_44-1575043694:201701..202823 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1510915933:204958..205050 | TCONS_00065508-exon-scaffold_44-1510915933:204958..205050 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1510915933:204657..204740 | TCONS_00065508-exon-scaffold_44-1510915933:204657..204740 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1510915933:203682..204044 | TCONS_00065508-exon-scaffold_44-1510915933:203682..204044 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1510915933:201701..202823 | TCONS_00065508-exon-scaffold_44-1510915933:201701..202823 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1491911889:204958..205050 | TCONS_00065508-exon-scaffold_44-1491911889:204958..205050 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1491911889:204657..204740 | TCONS_00065508-exon-scaffold_44-1491911889:204657..204740 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1491911889:203682..204044 | TCONS_00065508-exon-scaffold_44-1491911889:203682..204044 | Clytia hemisphaerica | exon |
| TCONS_00065508-exon-scaffold_44-1491911889:201701..202823 | TCONS_00065508-exon-scaffold_44-1491911889:201701..202823 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_44 | supercontig | scaffold_44:201701..205050 - |
Blast
The following BLAST results are available for this feature:
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