TCONS_00065503 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065503
Unique NameTCONS_00065503
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length511

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065503 ID=TCONS_00065503|Name=TCONS_00065503|organism=Clytia hemisphaerica|type=transcript|length=511bp
CGCCAAACACGAAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAAT
GGCTATTGGTCACCATATACATGATCGAGGTCACGTGGTCGAACGTATTC
GAAACAATCGAACCAATGAacgagaagaaaaacaaaatttcattaatcTT
GATGAAGacGACCGTGAACGATTCCATCAAGAGTGGCAAAGTAAAGCCGG
TAGAAATCACCAAGCGCGTGGCTTAACGCACCATGATAGCTCACATAATC
GATACCAACCTCATCAGCCACGAGCGCTTGATAGTGCTGAATATCATCGA
AATAATTTGACACGTCACCGCAGTGATTCCCGTCAACCGACGGAACGACG
CCGTCAGCGGGACAACGACAGACACGTAAGATACGAAGAAATATGAAACA
TataaaggattgttttttattatcttATATTATGTATATTTAAATGGATG
TGTATAACTAATTTTTTGTGCGATAAAAAGAAGAAGTATATCAACTTATA
ACACTTCAGAg
Run BLAST on NCBI

protein sequence of TCONS_00065503-protein

>TCONS_00065503-protein ID=TCONS_00065503-protein|Name=TCONS_00065503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
RQTRKSERNSETGTDRMAIGHHIHDRGHVVERIRNNRTNEREEKQNFINL
DEDDRERFHQEWQSKAGRNHQARGLTHHDSSHNRYQPHQPRALDSAEYHR
NNLTRHRSDSRQPTERRRQRDNDRHVRYEEI
Run BLAST on NCBI

transcript from alignment at scaffold_44:170779..176541-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065503 ID=TCONS_00065503|Name=TCONS_00065503|organism=Clytia hemisphaerica|type=transcript|length=5763bp|location=Sequence derived from alignment at scaffold_44:170779..176541- (Clytia hemisphaerica)
CGCCAAACACGAAAAAGCGAACGAAACTCAGAGACTGGGACCGACAGAAT
GGCTATTGGTCACCATATACGTATGTTATACTTCGATACATTTCATATGT
CAAATTAAAAATACACATGTGGATTGACATGCTTTAATTTCAACTTTTGA
ATTTGAGAATTGTTCGACTAGGATCAATTCGTGTTTATCTGTGAAACCTC
CTTGATGTATCTTCTTACTCTTAGGTTCCAAATAAACTATCAGGGGGGAT
CGGGTTCAATAATCCGAAATGATAAGCCGTCGTCGAACATAGAGGTCGTC
GTCGAACATAGAGGTCTTGGCCGGACATAGAGGTCGTCGTCGAACATAGA
GGTCTTGGCCGGACATAGAGGTCGTCGTCGAGCATAGAGGTCTTGGCCGG
ACATAGAAGTCGCCGTCGAACAACGGGATCACTAGCCTGGAGGTCACTTA
GAGCTTTTTGATAGACTGGATGACGCAGATAAGTGGCCATTCTGATTTTT
ATTCTGCCCAGCCAGACTCTAACGTCGTCTGGAAGATTTCAGATGTTTTG
GAAATTAATCAATGATTAATGAATGGGGTGATGATTTTTTTTNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGACAC
AAAGTTTGAACTTCTACGCTATGGTCCAGATGAAGAAATAAAAAACCAAA
CTCACTACAAATCCCCTTCAGGAGAAAATATCGAAAGGAAGAAATTGGTT
TCGCAAAAACCACCCTGAGCAAGAACCACCCCGCCAGATAAATCGCCTTC
GTTGATGCAAACCACCCCGGCGAATTCTATGTTCGACGACGACCTCTATG
TCCCTTTGTCCGGCCAAGACCTCTATGTCCGGCCATGACCTCTATGTCCG
GCCAAGACCTTTATGTCCGGCCAAGACCTTTATGTTCGACGATGACCTCT
ATGTCCGGCCAAGACCTCTATGTTCGACGACGANNNNNNNNNNNNNNNNN
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NNNNNNNCCCCACCCCCCCCCCCGGTGGACCTCATTAGGACCTGTTTATT
AACTTTTTTTTTTTTCAACTTTCAAAGAGAAGGTCCCTTATTCTGTTCTA
AATAGCCTGATTTTAGCCTATATTTACCTTATTTTAGGGTTTTCGTAATT
ACAATTTCCAACCCCCCGGAAATTAGGTCTATATCTGATTTGGAGGAATG
CATGTTCTTTGCCATAGTGGTGAAAATATATGTAACCGAAATAAAACAAT
CACATTTCCCCTTTTCTTAGATGATCGAGGTCACGTGGTCGAACGTATTC
GAAACAATCGAACCAATGAACGAGAAGAAAAACAAAATTTCATTAATCTT
GATGAAGGTACGCCACTTCTGTTTTTCATTTAGTTGCCATTAATATTTTC
CTTACTAACTGATTTTACTATAATCACAATGTTTATACTGTTATTATAAA
TAAAGCGCCCTGCTAACTTAGCGAAAAGCTACCATTACGGAATAAAAACG
TACCAATTTGAAGGCTGAGTTGATTTCTTATGCAATTTGAAAGTTTTATT
CATAATGAAGTTTGGATTACTCTAGAGTCGAGTTTCTGATAAACGGAGGG
CATAAAACTTGACTAAAGGAAATTTTCACTGAGGTTAGGGGGTAAATAAT
TGGTATATTTAATCAATTTAATTTAATATAACCTGAATCTTCAAAGATAG
ATATTTAAGCAAAAAGTAGGCATATGAAATTGAGAAAAATTAGTCACAAT
TAATAAACTTTTGCTATACTAGACAACAACTGAACTGAAAAAGCTCTATT
AATTAAGATAACTGCATCATAAGTTATGAATTTATTATTGATTGAAACTT
TAATTTTTCTTTTGAAGACGACCGTGAACGATTCCATCAAGAGTGGCAAA
GTAAAGCCGGTAGAAATCACCAAGCGCGTGGCTTAACGCACCATGATAGC
TCACATAATCGATACCAACCTCATCAGCCACGAGCGCTTGATAGTAAGTG
TGGCCAGGCTTCTGATATTTTTTTTGTGCTCTACTCTTTTTAACCTAAGC
ATGAAGGTAATAAAGATATAGATGGAGAGTCAATGCCTTTTGTTCTATTC
TGATTTATCATCGGAAGCAAACAGCTGTTTGGTTGCTTTGGGAATAAGAT
GAGCCTTGTCATGAAAAATTGAAAAAAACTTCACATAATAAGCACAATAC
TCTAAACTTCTAGGGGAAGCTGCCCATAAGGCCATCGATAGATTTAAAAG
AGAATTACGTGTTACGATTAGGAACCTTGTATCGATCATTTTGTTAGAGT
ATGAAAACCGCTGCTCACTTAGACGTGAAGATTTTAAGATGAGAAACTTT
CAATGATAATGTGATGCGACTCTCAATGTTTACAAAATACCAGCCCAAAA
ATATATCCTTATGAAATTGATATATTCTTTTATCCTTAAATCAGTTAAGA
CTATTTCGAATCGCATTTTAACTAAGATTTCTCGCCAAATTAAGTTTTTC
AAAATCAACGGACCAGCCTCTTTCTGTTCTTATAAATTTACATTTCGGAT
TTTTTTGCTTCCAATGATAGTACATCAAAGAAAAGCCGCTTTGAATAGAT
TTATAAAAGATTTCAACGACCATTTAGGTCATTACCGAGACGTTTTCTCT
ACATCTATATCTTTATTACCTTCATGACCTAAATTTCTTTTGTTTTTGTT
CAATANCTGATATTTTTTTTGTGCTCTACTCTTTTTAACCTAAGGTTCTT
TTGTTTTTGTTCAATTCCATATCAAGTCATTTTTCTCACCCTGATTTCTC
ATGAATCATGTATAGATTTGTTTGAAACATTCTAAAAACTGCCTTTTGTT
GGAAAGGTTCTTTTCCGGATCGAATCCTTTTGTTTTTGAACTCAAAAACT
CTCTTTGTTGTCTTTCTTCTTAAAAGGAGTTTCTCGTTTCTCTCTACGCA
GATTCTTTAAAACATATTTTCCTCCCACCCATTAGGTGCTGAATATCATC
GAAATAATTTGACACGTCACCGCAGTGATTCCCGTCAACCGACGGAACGA
CGCCGTCAGCGGGACAACGACAGACACGTAAGATACGAAGAAATATGAAA
CATATAAAGGATTGTTTTTTATTATCTTATATTATGTATATTTAAATGGA
TGTGTATAACTAATTTTTTGTGCGATAAAAAGAAGAAGTATATCAACTTA
TAACACTTCAGAG

Coding sequence (CDS) from alignment at scaffold_44:170779..176541-

>TCONS_00065503 ID=TCONS_00065503|Name=TCONS_00065503|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_44:170779..176541- (Clytia hemisphaerica)
GTGCTGAATATCATCGAAATAATTTGACACGTCACCGCAGTGATTCCCGT
CAACCGACGGAACGACGCCGTCAGCGGGACAACGACAGACACGTAAGATA
CGAAGAAATATGAACGACCGTGAACGATTCCATCAAGAGTGGCAAAGTAA
AGCCGGTAGAAATCACCAAGCGCGTGGCTTAACGCACCATGATAGCTCAC
ATAATCGATACCAACCTCATCAGCCACGAGCGCTTGATAATGATCGAGGT
CACGTGGTCGAACGTATTCGAAACAATCGAACCAATGAACGAGAAGAAAA
ACAAAATTTCATTAATCTTGATGAAGCGCCAAACACGAAAAAGCGAACGA
AACTCAGAGACTGGGACCGACAGAATGGCTATTGGTCACCATATACGTGC
TGAATATCATCGAAATAATTTGACACGTCACCGCAGTGATTCCCGTCAAC
CGACGGAACGACGCCGTCAGCGGGACAACGACAGACACGTAAGATACGAA
GAAATATGAACGACCGTGAACGATTCCATCAAGAGTGGCAAAGTAAAGCC
GGTAGAAATCACCAAGCGCGTGGCTTAACGCACCATGATAGCTCACATAA
TCGATACCAACCTCATCAGCCACGAGCGCTTGATAATGATCGAGGTCACG
TGGTCGAACGTATTCGAAACAATCGAACCAATGAACGAGAAGAAAAACAA
AATTTCATTAATCTTGATGAAGCGCCAAACACGAAAAAGCGAACGAAACT
CAGAGACTGGGACCGACAGAATGGCTATTGGTCACCATATACGTGCTGAA
TATCATCGAAATAATTTGACACGTCACCGCAGTGATTCCCGTCAACCGAC
GGAACGACGCCGTCAGCGGGACAACGACAGACACGTAAGATACGAAGAAA
TATGAACGACCGTGAACGATTCCATCAAGAGTGGCAAAGTAAAGCCGGTA
GAAATCACCAAGCGCGTGGCTTAACGCACCATGATAGCTCACATAATCGA
TACCAACCTCATCAGCCACGAGCGCTTGATAATGATCGAGGTCACGTGGT
CGAACGTATTCGAAACAATCGAACCAATGAACGAGAAGAAAAACAAAATT
TCATTAATCTTGATGAAGCGCCAAACACGAAAAAGCGAACGAAACTCAGA
GACTGGGACCGACAGAATGGCTATTGGTCACCATATACGTGCTGAATATC
ATCGAAATAATTTGACACGTCACCGCAGTGATTCCCGTCAACCGACGGAA
CGACGCCGTCAGCGGGACAACGACAGACACGTAAGATACGAAGAAATATG
AACGACCGTGAACGATTCCATCAAGAGTGGCAAAGTAAAGCCGGTAGAAA
TCACCAAGCGCGTGGCTTAACGCACCATGATAGCTCACATAATCGATACC
AACCTCATCAGCCACGAGCGCTTGATAATGATCGAGGTCACGTGGTCGAA
CGTATTCGAAACAATCGAACCAATGAACGAGAAGAAAAACAAAATTTCAT
TAATCTTGATGAAGCGCCAAACACGAAAAAGCGAACGAAACTCAGAGACT
GGGACCGACAGAATGGCTATTGGTCACCATATAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041051XLOC_041051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065503-exon-scaffold_44-1575043694:176472..176541TCONS_00065503-exon-scaffold_44-1575043694:176472..176541Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1575043694:172635..172721TCONS_00065503-exon-scaffold_44-1575043694:172635..172721Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1575043694:171999..172124TCONS_00065503-exon-scaffold_44-1575043694:171999..172124Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1575043694:170779..171006TCONS_00065503-exon-scaffold_44-1575043694:170779..171006Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1510915933:176472..176541TCONS_00065503-exon-scaffold_44-1510915933:176472..176541Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1510915933:172635..172721TCONS_00065503-exon-scaffold_44-1510915933:172635..172721Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1510915933:171999..172124TCONS_00065503-exon-scaffold_44-1510915933:171999..172124Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1510915933:170779..171006TCONS_00065503-exon-scaffold_44-1510915933:170779..171006Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1491911889:176472..176541TCONS_00065503-exon-scaffold_44-1491911889:176472..176541Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1491911889:172635..172721TCONS_00065503-exon-scaffold_44-1491911889:172635..172721Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1491911889:171999..172124TCONS_00065503-exon-scaffold_44-1491911889:171999..172124Clytia hemisphaericaexon
TCONS_00065503-exon-scaffold_44-1491911889:170779..171006TCONS_00065503-exon-scaffold_44-1491911889:170779..171006Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065503-proteinTCONS_00065503-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_44supercontigscaffold_44:170779..176541 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
54.6776	53.0149	19.4499	11.9496	62.8433	45.7388	46.9715	48.5455	47.2723	39.9961	56.1524	56.5697	60.6827	71.5737	53.8464	47.5664	39.3575	43.6029	56.2535	50.0387	36.7892	39.1326	77.404	74.4039	93.2174	97.4887	41.6657	62.6169	47.2697	51.836
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019376Myeloid_leukemia_factor
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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