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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065481 ID=TCONS_00065481|Name=TCONS_00065481|organism=Clytia hemisphaerica|type=transcript|length=7638bpRun BLAST on NCBI protein sequence of TCONS_00065481-protein >TCONS_00065481-protein ID=TCONS_00065481-protein|Name=TCONS_00065481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2216bp MDSLLHYEGNTSGSELVSKTLDILRKLVEEEDHSVTEEDKDAALKCFMQLRun BLAST on NCBI transcript from alignment at scaffold_44:116355..146948+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065481 ID=TCONS_00065481|Name=TCONS_00065481|organism=Clytia hemisphaerica|type=transcript|length=30594bp|location=Sequence derived from alignment at scaffold_44:116355..146948+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_44:116355..146948+ >TCONS_00065481 ID=TCONS_00065481|Name=TCONS_00065481|organism=Clytia hemisphaerica|type=CDS|length=232785bp|location=Sequence derived from alignment at scaffold_44:116355..146948+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00065481 vs. Swiss-Prot (Human)
Match: NBEL2 (Neurobeachin-like protein 2 OS=Homo sapiens GN=NBEAL2 PE=1 SV=2) HSP 1 Score: 652.129 bits (1681), Expect = 0.000e+0 Identity = 409/1064 (38.44%), Postives = 578/1064 (54.32%), Query Frame = 3
Query: 4110 WTGIIGSDIAAWTKRIEAICSLHEIAARHHFILPMLNIERQLYEMCLEASVQSI-EQSTQPYAVDTQNAVQILRLVEEFLISTEISDDETLKWSVKLIGNIFKLLNTLNAWDDSIEGGAEWVEVLQITERILYRSFMIKLDMDILVETNKRLTQLLHKRLVTDEMEATYQLFKLDSVL-RISQAHELQ------------------------LDKIINILLQRFERFTSIFIAQNLLTNLPSLNPA----TFKTNFLAYMETEEYYTFI-RVIRDKALEFEQKPSAAKPSLDNGRLWMDSLSSMSKSVQQRQMKLEDSLENVSKIVYHEFDERRA---AERKSLAESVKIYRQKMAIIKSLWQYQKRFLTSERGAWSSKKLSEPRHFRLSNTENCYRMRLKLTENLNYNPHSDAARQRDVSNAPDNEPQVRKQSNELNLADVTVERADEQVFSDEETLSPNEDEDEEEKQADSSHLYDLETFDQISGSCIHSSDCQLVTLMDVVAGRVELTKTHVCYYDDS-----QESNNSHDFKFALEELREVYNRRYNLRKSAIEFFLLDRSSYFINFK------------------------QPKDKDLFYRKLTGQRPKNLYYSGIQNPSRLLRVSKLTTKWVDREISNFEYLMQLNTISGRTYNDLAQYPVFPWVITDFESDTIDLENPDIYRDLTKPVGXXXXXXXXXXXXRYDSFIDPSGLTQRSHYFTHYSNPGGILHYLVRVEPFTSLHIRLQGGKFDCADRQFYSIATTWKT-VYTGGDVKELIPEFFCFPEFLSNLNHFNLGSRQRTGERVNDVALPPWAKNAYDFIDIHRRALESEYVSENLHSWIDLIFGYKQRGKNAEQALNVFSHYSYEGAVDLDKIEDDILREATEGMINNFGQTPTQLLKKPHPKRKALSEVD--LGRMKVTT-QLETDPNNINFSLIQILHMTSPVVFIAVCKPRPKSILYHAVPDSLITIHSNGLFGIHQWFPYTDTKSNNFSFTMDVLLASPSSYNQRFLPGVRSPMHEFSSKLFAFTSDGHLMLLCGYWDNSIRVVNTDRGK 7100
W G+ GSD AAW +R + L ++ A + P I+R L EM LE+++ I E A TQ A+ +LRL+++FL + + E WS KL + LL+ L AW G A+ E+ QI R++ +++ D + + RL LL + EA Y L KL++ L R+ L+ L ++ LL R + L LPSL P TF +F A+ T E+ FI + ++ +FE A L +G W + S Q+RQ + S ++V E +RRA R + + + MA++ W R L S GAW+ + PR ++LS+ E RMRLKL N +++PH +A+ RD P + L LA VT E +V + E L ED+ E++ A+ + D+ + S++CQLVT++ VV G +E+T +V +YD S E +DF+ L +LREV+ RR+NLR+SA+E F +D+++YF+NF + ++ Y L RP + Y ++P +LR S LT KWV REISNFEYLMQLNTI+GRTYNDL+QYPVFPWV+ D+ S T+DL NP ++RDL+KP+G +N K A+ ++++Y+SF DP+G + HY THYSN G++HYL+RVEPFTSLH++LQ G+FDC+DRQF+S+A W+ + + DVKELIPEFF FP+FL N N F+LG Q T E+V DV LPPWA + DFI HR+ALESEYVS +LH WIDLIFGYKQRG AE+ALNVF + +YEGAVDLD + D+ R+A EG+I+NFGQTP QLLK+PHP R + E L R+ + + + + +++ P+V V +P S + PD L+T+ ++GL G H W PY SN FSF+ D + S QR L G P S + A DG L+ G+WD S+RV RGK
Sbjct: 1455 WRGVEGSDEAAWRERGQVFSVLTQLGASATLVRPPDCIKRSLLEMMLESALTDIKEAPVGVLASLTQQALWLLRLLQDFLCAEGHGNQEL--WSEKLFEGVCSLLDRLGAWPHLANGTADLREMAQIGLRLVLGYILLE-DPQLHAQAYVRLHMLLQTAVPARREEACYVLSKLEAALGRVLNTSSLESATDEAGSPLAAAAAAAAAERCSWLVPLVRTLLDR------AYEPLGLQWGLPSLPPTNGSPTFFEDFQAFCATPEWRHFIDKQVQPTMSQFEMDTYAKSHDLMSG-FWNACYDMLMSSGQRRQWERAQSRRAFQELVL-EPAQRRARLEGLRYTAVLKQQATQHSMALLH--WGALWRQLASPCGAWALRDTPIPR-WKLSSAETYSRMRLKLVPNHHFDPHLEASALRDNLG---EVPLTPTEEASLPLA-VTKE---AKVSTPPELL--QEDQLGEDELAELETPMEAAELDEQREKLVLSAECQLVTVVAVVPGLLEVTTQNVYFYDGSTERVETEEGIGYDFRRPLAQLREVHLRRFNLRRSALELFFIDQANYFLNFPCKVGTTPVSSPSQTPRPQPGPIPPHTQVRNQVYSWLLRLRPPSQGYLSSRSPQEMLRASGLTQKWVQREISNFEYLMQLNTIAGRTYNDLSQYPVFPWVLQDYVSPTLDLSNPAVFRDLSKPIGVVNPKHAQLVREKYESFEDPAGTIDKFHYGTHYSNAAGVMHYLIRVEPFTSLHVQLQSGRFDCSDRQFHSVAAAWQARLESPADVKELIPEFFYFPDFLENQNGFDLGCLQLTNEKVGDVVLPPWASSPEDFIQQHRQALESEYVSAHLHEWIDLIFGYKQRGPAAEEALNVFYYCTYEGAVDLDHVTDERERKALEGIISNFGQTPCQLLKEPHPTRLSAEEAAHRLARLDTNSPSIFQHLDELKAFFAEVVSDGVPLVLALVPHRQPHSFITQGSPDLLVTVSASGLLGTHSWLPYDRNISNYFSFSKDPTMG--SHKTQRLLSGPWVPGSGVSGQALAVAPDGKLLFSGGHWDGSLRVTALPRGK 2493 HSP 2 Score: 162.925 bits (411), Expect = 1.681e-39 Identity = 135/472 (28.60%), Postives = 219/472 (46.40%), Query Frame = 3
Query: 1149 ILIQALPNFQPDAQRT-LCESIRVMCATVLQNRLICCRIGLITDILMVLQSSLDLEMHSKDCLISIMEILGCLSITSSELKLLINLF---------HRKTQYELADRLVQSLERMAXXXXXXXXXXXPKHFIDLYNPYKETTIKCPVIQKFNAKGITIHTWVCLD--FSLPNRATQRTTKIRHILYSFLNARGEGFEAFFTSDGFLVIVVHTKKEFLTTTVTSAPFVDQEWHSLTIVHT--KRLLGRALLHVYVDGLEIHAAQLQFPTLNKEIVHSTIGSS-------------ISANGNFHYMIHPPTT-----PQS-----------PVNKGETIFPENIVAGHQNEIWGIPTSLKGQMSSFMLFNDSVQVDRIRELAGLGPNFVHLFTPKDLLPALLANDTAGLLSSVVFYYNAKAAARNGLEDLNKTFRDKMHALR-NLTGHICQVYTIQESIQSLGGLPVLFPLLEQ 2432
+L Q LP+ R L + +R +C + +R C + GL+ +L L + L LE ++ L+++++ LG +SI EL+ L+ + A ++++L MA + DL P I P +Q++ G T H W+CL + P A R + R LYSF + G GFEAFFT+ G LV+ V T+KE+LT ++ F D WH + IVH +R + L+HVY DG + A L+ P+L++ IGS+ Y HP T P S P+ +G ++ +AG Q+ WG PTSL+G++ + +F++++Q +R L LGPN F P+ L L + ++ +Y+ +A N DL+ + H L LTGH + + +++ + +GG+ L PLLE+
Sbjct: 454 VLAQWLPSLPTAELRLFLAQRLRWLCDSCPASRATCVQAGLVGCLLETLSTGLALEARCQEQLLALLQALGRVSIRPMELRHLLRPRPGLDSEPGGAEAGKARHAGAVIRTLSGMARHQGPARAL----RYFDL-TP-SMAGIMVPPVQRWPGPGFTFHAWLCLHPMDTAPTPAPTRPLQ-RKQLYSFFTSSGSGFEAFFTAAGTLVVAVCTRKEYLTMSLPEVSFADSAWHCVAIVHVPGRRPFSQNLVHVYKDGHLVKTAPLRCPSLSEPFSSCCIGSAGYRTTTTTTGLPTPPVPATLAYT-HPALTRSQSVPASTGLGWGSGLVAPLQEGSI---DSTLAGTQDTRWGSPTSLEGELGAVAIFHEALQATALRTLCTLGPNETAPFKPEGELHE--------LSTRLLLHYSPQACKNNICLDLSPS-----HGLDGRLTGHRVETWDVKDVVNCVGGMGALLPLLER 901 The following BLAST results are available for this feature:
BLAST of TCONS_00065481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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