TCONS_00065471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065471
Unique NameTCONS_00065471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length630

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065471 ID=TCONS_00065471|Name=TCONS_00065471|organism=Clytia hemisphaerica|type=transcript|length=630bp
ggttggtACGCCACTGAATGCTACTAAGATTAGGTTTTCACATCAAATTA
AGCATCTGCGGGGCGTACACTTGTGTTTATAAGTGTAGTGTATTGGTGTT
CAGCATCCCTCCATCCCTCTATATCAGGGTCATTATTTGTCTGTCTCAAC
AGAATATTCTGTTCGACTGGTTCCTCGCTGATGTCATCATTTCGTTCGTC
CATTTCATCGCGACACTCACATATCACGTAACGTTTGTAGATAAACCGGT
AGAAGAGAATAGAAGCAATTACTACGACCACGATTAAAGAAACTATCAGT
ATGATTTTATATGTGGTATCATTGTTCGATACCTTTGCACATTGGGTTTT
CGCATTGATGCATTTTTCATAAAGTTTCTCGTACTGTTTGCCAGAATTTC
GTTCTCTTTGTATTTGTAAACAGATTTTATAGGTCGTGCAAGGTTTCCGT
CTTTCAATAAGAAAACTACTTGGTAGTTCATGGTCAGCTTTGAGGAAGGT
TTGTCGAACGGTGCCATCCATTGAGATCACTATACTATCTGTAAAAGTTT
TTTCGTCCCATTTTGGTAGTTCCCATTGAATCTGTATCTCCGTCTCCGGA
TCATTGGGTTGCCCGGTGGATAAATTTCGA
Run BLAST on NCBI

protein sequence of TCONS_00065471-protein

>TCONS_00065471-protein ID=TCONS_00065471-protein|Name=TCONS_00065471-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
RNLSTGQPNDPETEIQIQWELPKWDEKTFTDSIVISMDGTVRQTFLKADH
ELPSSFLIERRKPCTTYKICLQIQRERNSGKQYEKLYEKCINAKTQCAKV
SNNDTTYKIILIVSLIVVVVIASILFYRFIYKRYVICECRDEMDERNDDI
SEEPVEQNILLRQTNNDPDIEGWRDAEHQYTTLINTSVRPADA
Run BLAST on NCBI

transcript from alignment at scaffold_439:492797..493426

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065471 ID=TCONS_00065471|Name=TCONS_00065471|organism=Clytia hemisphaerica|type=transcript|length=630bp|location=Sequence derived from alignment at scaffold_439:492797..493426 (Clytia hemisphaerica)
TCGAAATTTATCCACCGGGCAACCCAATGATCCGGAGACGGAGATACAGA
TTCAATGGGAACTACCAAAATGGGACGAAAAAACTTTTACAGATAGTATA
GTGATCTCAATGGATGGCACCGTTCGACAAACCTTCCTCAAAGCTGACCA
TGAACTACCAAGTAGTTTTCTTATTGAAAGACGGAAACCTTGCACGACCT
ATAAAATCTGTTTACAAATACAAAGAGAACGAAATTCTGGCAAACAGTAC
GAGAAACTTTATGAAAAATGCATCAATGCGAAAACCCAATGTGCAAAGGT
ATCGAACAATGATACCACATATAAAATCATACTGATAGTTTCTTTAATCG
TGGTCGTAGTAATTGCTTCTATTCTCTTCTACCGGTTTATCTACAAACGT
TACGTGATATGTGAGTGTCGCGATGAAATGGACGAACGAAATGATGACAT
CAGCGAGGAACCAGTCGAACAGAATATTCTGTTGAGACAGACAAATAATG
ACCCTGATATAGAGGGATGGAGGGATGCTGAACACCAATACACTACACTT
ATAAACACAAGTGTACGCCCCGCAGATGCTTAATTTGATGTGAAAACCTA
ATCTTAGTAGCATTCAGTGGCGTaccaacc

Coding sequence (CDS) from alignment at scaffold_439:492797..493426

>TCONS_00065471 ID=TCONS_00065471|Name=TCONS_00065471|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_439:492797..493426 (Clytia hemisphaerica)
CGAAATTTATCCACCGGGCAACCCAATGATCCGGAGACGGAGATACAGAT
TCAATGGGAACTACCAAAATGGGACGAAAAAACTTTTACAGATAGTATAG
TGATCTCAATGGATGGCACCGTTCGACAAACCTTCCTCAAAGCTGACCAT
GAACTACCAAGTAGTTTTCTTATTGAAAGACGGAAACCTTGCACGACCTA
TAAAATCTGTTTACAAATACAAAGAGAACGAAATTCTGGCAAACAGTACG
AGAAACTTTATGAAAAATGCATCAATGCGAAAACCCAATGTGCAAAGGTA
TCGAACAATGATACCACATATAAAATCATACTGATAGTTTCTTTAATCGT
GGTCGTAGTAATTGCTTCTATTCTCTTCTACCGGTTTATCTACAAACGTT
ACGTGATATGTGAGTGTCGCGATGAAATGGACGAACGAAATGATGACATC
AGCGAGGAACCAGTCGAACAGAATATTCTGTTGAGACAGACAAATAATGA
CCCTGATATAGAGGGATGGAGGGATGCTGAACACCAATACACTACACTTA
TAAACACAAGTGTACGCCCCGCAGATGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041033XLOC_041033Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065471-proteinTCONS_00065471-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065471-exon-scaffold_439-1491911889:492797..493426TCONS_00065471-exon-scaffold_439-1491911889:492797..493426Clytia hemisphaericaexon
TCONS_00065471-exon-scaffold_439-1510915933:492797..493426TCONS_00065471-exon-scaffold_439-1510915933:492797..493426Clytia hemisphaericaexon
TCONS_00065471-exon-scaffold_439-1575043694:492797..493426TCONS_00065471-exon-scaffold_439-1575043694:492797..493426Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:492797..493426 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0842702	0.164353	0.57249	0.373395	4.20479	4.22071	3.57531	4.36145	8.16648	8.70813	2.81744	3.08679	6.165	5.29654	5.1201	5.59735	4.99764	4.9279	9.04769	10.8739	8.47363	6.43816	4.44464	5.0071	6.87626	5.08717	34.2031	32.9262	14.3106	14.4849
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top