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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065469 ID=TCONS_00065469|Name=TCONS_00065469|organism=Clytia hemisphaerica|type=transcript|length=1530bp
TTCTTTTAAGAGATCTGTAAAGTGTTACGTGTATAATATAACCCATAATC
AAGATGATATAATGCGCAGTTTCGAATACAGAGGGGATAGGAAATCTACG
ATGGAAGGACTACGTTCGttcgtttgattgagattttgATTCAAACCGTA
GACTGTTTAATGATTTCTATCATTCTAAACAATAGAGCTATTGTTTTCTG
AAAACATTCTTATATAATGACATATTATTTTCCATGCGTAAAGTGACTTT
GTTAATAACCTGTGAATCCCCTCTGAATTCATTACTGTTAAAGATATATA
CATACATATACATATAAACATTTATCTATTCACACCTTAAAATACCAAAA
CGTTCCAAATGAATGCGTTGAATCATTATCCGACAATCTTCAAAGATTTT
TCTCATATGGTTCGTGTCCACAGCACACGTAAAATGCGGAAAACAAAGTC
GTGTACCGTTCTCTGTGGCGATTGGTCTGGTCTGTGGAATTGACATGAAC
ATATCACGTATGAAAAGTTTGGCACGCGTCACATCATGCGGCACTTGTAA
AGAGTACGTTTTCTTGGAGGGCATTATATTCGGTTGGTAATATTTGAAGC
TGGGAAAATAATCCTCTAATTTATGTTTATTTGCTTCAATTTTCTCTTGT
AATAAGTCCACTTTATTTAAGAACAAAATCACCGATACCTCGTTCAAAAA
TCGATTCTCCCAAATTTGCGTAAATAAATCCAAGCTTTCTTTTAGCCGAT
TTCTACTCGGATCTTCTTTTAAAGTCAAATTATATCCACTAAGTGACGTC
ACAAACACTACCGCCGTAGCATCGTTAAAGCATTGGATCCATTTGCGGCG
TTGGTCTCTCTGCCCGCCAACGTCGAACATATGAAAATTGGCTTCTTTTA
CTTTGAATTTAATCTCAGTAATCTGTTCAGTCATAACACGACAACGTAGA
ATATCTTGGTCATCTGGTATATAGTCCGGCTTCCGTAAATCTGGCAAACG
ATCAAGAAAATACTTAGCACTGTCTATTAAATGATATTCGTGACTGCGTT
CATAACAATCCGTTAACGCCTTTGACTGCCATAAGACTTGACAGTCTTGA
AAAAATCCTTCGTTATATTCACCAGAAACGGGTGTTGAGTATCGATCCAT
GATTCGTGTAGCAGTTTCTACTAGCTCTTCCGTATCGAAAGTGATTTCTA
AAGAATGCATCGCTTGCAGCATCGTCACAACAGCATCGCGTACGTTGTTA
AATACTTTTGGGATGAACTCCCGACGTTCCATATCTTGGAATCCGTCCAT
GTTGATAATTTGCATTTGTTTCACAATAGTGCTTTTTCCACTCTCAGCTG
CTCCTAATAAGAGTAAACGATGCATGGTGCGGTAGACCTTTCGTTCTTTA
TGCAACAAGGAATCAATGAAAAGACTGTTCTCAATGTCAGGGTCCATATC
CCTGTTGCCACCGCAACAAGGAAACATTTTGATGTTATATTGTTTGGTTT
AGTTTTTCGTTTTTCTCATttgttttttta Run BLAST on NCBI protein sequence of TCONS_00065469-protein >TCONS_00065469-protein ID=TCONS_00065469-protein|Name=TCONS_00065469-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
MFPCCGGNRDMDPDIENSLFIDSLLHKERKVYRTMHRLLLLGAAESGKST
IVKQMQIINMDGFQDMERREFIPKVFNNVRDAVVTMLQAMHSLEITFDTE
ELVETATRIMDRYSTPVSGEYNEGFFQDCQVLWQSKALTDCYERSHEYHL
IDSAKYFLDRLPDLRKPDYIPDDQDILRCRVMTEQITEIKFKVKEANFHM
FDVGGQRDQRRKWIQCFNDATAVVFVTSLSGYNLTLKEDPSRNRLKESLD
LFTQIWENRFLNEVSVILFLNKVDLLQEKIEANKHKLEDYFPSFKYYQPN
IMPSKKTYSLQVPHDVTRAKLFIRDMFMSIPQTRPIATENGTRLCFPHFT
CAVDTNHMRKIFEDCRIMIQRIHLERFGILRCE Run BLAST on NCBI transcript from alignment at scaffold_439:449729..451258 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065469 ID=TCONS_00065469|Name=TCONS_00065469|organism=Clytia hemisphaerica|type=transcript|length=1530bp|location=Sequence derived from alignment at scaffold_439:449729..451258 (Clytia hemisphaerica)
taaaaaaacaaATGAGAAAAACGAAAAACTAAACCAAACAATATAACATC
AAAATGTTTCCTTGTTGCGGTGGCAACAGGGATATGGACCCTGACATTGA
GAACAGTCTTTTCATTGATTCCTTGTTGCATAAAGAACGAAAGGTCTACC
GCACCATGCATCGTTTACTCTTATTAGGAGCAGCTGAGAGTGGAAAAAGC
ACTATTGTGAAACAAATGCAAATTATCAACATGGACGGATTCCAAGATAT
GGAACGTCGGGAGTTCATCCCAAAAGTATTTAACAACGTACGCGATGCTG
TTGTGACGATGCTGCAAGCGATGCATTCTTTAGAAATCACTTTCGATACG
GAAGAGCTAGTAGAAACTGCTACACGAATCATGGATCGATACTCAACACC
CGTTTCTGGTGAATATAACGAAGGATTTTTTCAAGACTGTCAAGTCTTAT
GGCAGTCAAAGGCGTTAACGGATTGTTATGAACGCAGTCACGAATATCAT
TTAATAGACAGTGCTAAGTATTTTCTTGATCGTTTGCCAGATTTACGGAA
GCCGGACTATATACCAGATGACCAAGATATTCTACGTTGTCGTGTTATGA
CTGAACAGATTACTGAGATTAAATTCAAAGTAAAAGAAGCCAATTTTCAT
ATGTTCGACGTTGGCGGGCAGAGAGACCAACGCCGCAAATGGATCCAATG
CTTTAACGATGCTACGGCGGTAGTGTTTGTGACGTCACTTAGTGGATATA
ATTTGACTTTAAAAGAAGATCCGAGTAGAAATCGGCTAAAAGAAAGCTTG
GATTTATTTACGCAAATTTGGGAGAATCGATTTTTGAACGAGGTATCGGT
GATTTTGTTCTTAAATAAAGTGGACTTATTACAAGAGAAAATTGAAGCAA
ATAAACATAAATTAGAGGATTATTTTCCCAGCTTCAAATATTACCAACCG
AATATAATGCCCTCCAAGAAAACGTACTCTTTACAAGTGCCGCATGATGT
GACGCGTGCCAAACTTTTCATACGTGATATGTTCATGTCAATTCCACAGA
CCAGACCAATCGCCACAGAGAACGGTACACGACTTTGTTTTCCGCATTTT
ACGTGTGCTGTGGACACGAACCATATGAGAAAAATCTTTGAAGATTGTCG
GATAATGATTCAACGCATTCATTTGGAACGTTTTGGTATTTTAAGGTGTG
AATAGATAAATGTTTATATGTATATGTATGTATATATCTTTAACAGTAAT
GAATTCAGAGGGGATTCACAGGTTATTAACAAAGTCACTTTACGCATGGA
AAATAATATGTCATTATATAAGAATGTTTTCAGAAAACAATAGCTCTATT
GTTTAGAATGATAGAAATCATTAAACAGTCTACGGTTTGAATcaaaatct
caatcaaacgaaCGAACGTAGTCCTTCCATCGTAGATTTCCTATCCCCTC
TGTATTCGAAACTGCGCATTATATCATCTTGATTATGGGTTATATTATAC
ACGTAACACTTTACAGATCTCTTAAAAGAA Coding sequence (CDS) from alignment at scaffold_439:449729..451258 >TCONS_00065469 ID=TCONS_00065469|Name=TCONS_00065469|organism=Clytia hemisphaerica|type=CDS|length=1152bp|location=Sequence derived from alignment at scaffold_439:449729..451258 (Clytia hemisphaerica)
ATGTTTCCTTGTTGCGGTGGCAACAGGGATATGGACCCTGACATTGAGAA
CAGTCTTTTCATTGATTCCTTGTTGCATAAAGAACGAAAGGTCTACCGCA
CCATGCATCGTTTACTCTTATTAGGAGCAGCTGAGAGTGGAAAAAGCACT
ATTGTGAAACAAATGCAAATTATCAACATGGACGGATTCCAAGATATGGA
ACGTCGGGAGTTCATCCCAAAAGTATTTAACAACGTACGCGATGCTGTTG
TGACGATGCTGCAAGCGATGCATTCTTTAGAAATCACTTTCGATACGGAA
GAGCTAGTAGAAACTGCTACACGAATCATGGATCGATACTCAACACCCGT
TTCTGGTGAATATAACGAAGGATTTTTTCAAGACTGTCAAGTCTTATGGC
AGTCAAAGGCGTTAACGGATTGTTATGAACGCAGTCACGAATATCATTTA
ATAGACAGTGCTAAGTATTTTCTTGATCGTTTGCCAGATTTACGGAAGCC
GGACTATATACCAGATGACCAAGATATTCTACGTTGTCGTGTTATGACTG
AACAGATTACTGAGATTAAATTCAAAGTAAAAGAAGCCAATTTTCATATG
TTCGACGTTGGCGGGCAGAGAGACCAACGCCGCAAATGGATCCAATGCTT
TAACGATGCTACGGCGGTAGTGTTTGTGACGTCACTTAGTGGATATAATT
TGACTTTAAAAGAAGATCCGAGTAGAAATCGGCTAAAAGAAAGCTTGGAT
TTATTTACGCAAATTTGGGAGAATCGATTTTTGAACGAGGTATCGGTGAT
TTTGTTCTTAAATAAAGTGGACTTATTACAAGAGAAAATTGAAGCAAATA
AACATAAATTAGAGGATTATTTTCCCAGCTTCAAATATTACCAACCGAAT
ATAATGCCCTCCAAGAAAACGTACTCTTTACAAGTGCCGCATGATGTGAC
GCGTGCCAAACTTTTCATACGTGATATGTTCATGTCAATTCCACAGACCA
GACCAATCGCCACAGAGAACGGTACACGACTTTGTTTTCCGCATTTTACG
TGTGCTGTGGACACGAACCATATGAGAAAAATCTTTGAAGATTGTCGGAT
AATGATTCAACGCATTCATTTGGAACGTTTTGGTATTTTAAGGTGTGAAT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065469-exon-scaffold_439-1491911889:449729..451258 | TCONS_00065469-exon-scaffold_439-1491911889:449729..451258 | Clytia hemisphaerica | exon |
| TCONS_00065469-exon-scaffold_439-1510915933:449729..451258 | TCONS_00065469-exon-scaffold_439-1510915933:449729..451258 | Clytia hemisphaerica | exon |
| TCONS_00065469-exon-scaffold_439-1575043694:449729..451258 | TCONS_00065469-exon-scaffold_439-1575043694:449729..451258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:449729..451258 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0031683 | G-protein beta/gamma-subunit complex binding |
| GO:0004871 | signal transducer activity |
| GO:0003924 | GTPase activity |
| GO:0019001 | guanyl nucleotide binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
| GO:0007165 | signal transduction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| biological_process |
GO:0007165 |
signal transduction |
| molecular_function |
GO:0031683 |
G-protein beta/gamma-subunit complex binding |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0019001 |
guanyl nucleotide binding |
| molecular_function |
GO:0004871 |
signal transducer activity |
Blast
BLAST of TCONS_00065469 vs. Swiss-Prot (Human)
Match: GNAL (Guanine nucleotide-binding protein G(olf) subunit alpha OS=Homo sapiens GN=GNAL PE=1 SV=1) HSP 1 Score: 363.999 bits (933), Expect = 6.189e-121 Identity = 183/389 (47.04%), Postives = 252/389 (64.78%), Query Frame = -3
Query: 338 CCGGNRDMDPDI--------ENSLFIDSLLHKERKVYRTMHRLLLLGAAESGKSTIVKQMQIINMDGFQDMERREFIPKVFNNVRDAVVTMLQAMHSLEITFDTEELVETATRIMDRYSTPVSG----EYNEGFFQDCQVLWQSKALTDCYERSHEYHLIDSAKYFLDRLPDLRKPDYIPDDQDILRCRVMTEQITEIKFKVKEANFHMFDVGGQRDQRRKWIQCFNDATAVVFVTSLSGYNLTLKEDPSRNRLKESLDLFTQIWENRFLNEVSVILFLNKVDLLQEKIEANKHKLEDYFPSFKYYQPNIMPSKKTYSLQVPHDVTRAKLFIRDMFMSIPQTRPIATENGTRLCFPHFTCAVDTNHMRKIFEDCRIMIQRIHLERFGIL 1468
C GGN D E + I+ L KER Y+ HRLLLLGA ESGKSTIVKQM+I++++GF E+++ I + NV+DA+VT++ AM ++ L + Y ++ EY++ FF + LW + + C+ERS+EY LID A+YFL+R+ + DY P DQD+LRCRV+T I E +F+V + NFHMFDVGGQRD+RRKWIQCFND TA+++V + S YN+ ++ED + NRL+ESLDLF IW NR+L +S+ILFLNK D+L EK+ A K K+EDYFP + Y +P T VTRAK FIRD+F+ I AT +G C+PHFTCAVDT ++R++F DCR +IQR+HL+++ +L
Sbjct: 3 CLGGNSKTTEDQGVDEKERREANKKIEKQLQKERLAYKATHRLLLLGAGESGKSTIVKQMRILHVNGFNPEEKKQKILDIRKNVKDAIVTIVSAMSTI---IPPVPLANPENQFRSDYIKSIAPITDFEYSQEFFDHVKKLWDDEGVKACFERSNEYQLIDCAQYFLERIDSVSLVDYTPTDQDLLRCRVLTSGIFETRFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIYVAACSSYNMVIREDNNTNRLRESLDLFESIWNNRWLRTISIILFLNKQDMLAEKVLAGKSKIEDYFPEYANY---TVPEDATPDAGEDPKVTRAKFFIRDLFLRI----STATGDGKHYCYPHFTCAVDTENIRRVFNDCRDIIQRMHLKQYELL 381
The following BLAST results are available for this feature:
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