TCONS_00065463 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065463
Unique NameTCONS_00065463
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065463 ID=TCONS_00065463|Name=TCONS_00065463|organism=Clytia hemisphaerica|type=transcript|length=697bp
TACAAAACAGCGTATTAtaatgaaaactaaaaaaatatataaagtaatTT
TTTAAGTGTACATTTAGCTTTTTTcacgaaaaaaaagtttttcaattgcT
GCATCGCTGTTGACATTTCTGATCGCCAGAAATTGAGGAATATTTTGGTC
TTAATTTGCAAGTGCCTGCTGCCATTAAAGAACAAGTCGATGGTGCGTTT
GTGATAACTGCGTCATGGTTCCAAGTCCAAAATGCACATCCTGGTATTCC
GCCACAGTATCCAGCACATTGTTGCCACGTGGGTACATCAGGGATCGTTT
TGATTGGCTCTTGTTTACATTCATAATGGCGGCCGTAAGCCGGTTGGCac
cagacatattttttgccgCAATCAGCGTTCCCGGATAACACGTTGGCGTT
GATGTATGTACCACATTTGCCATAGTGCTTCCAACAAGTGAAAGGTTTAT
TTGTCGAATGTTGGTGCTCCCAAGTCCAGAATCGACAAAAAGAATATTTG
TTACATTCCGCTGCACATTCTTCCCAACTTCCCTCCTTTGTAACGCCCAA
ATCACACCCTCGGTATCCACGCCCGTTAATCAAATCGCATTTGTCTCCTG
GAGCGGCACCCCAGCATTGAAGCGCCAAACAAGCGATAAAGATGGCGTAA
GTAGCAGCGTGAATCATGTTGGAAGATTAGGTCAAGTAAGAGTAGAT
Run BLAST on NCBI

protein sequence of TCONS_00065463-protein

>TCONS_00065463-protein ID=TCONS_00065463-protein|Name=TCONS_00065463-protein|organism=Clytia hemisphaerica|type=polypeptide|length=191bp
MIHAATYAIFIACLALQCWGAAPGDKCDLINGRGYRGCDLGVTKEGSWEE
CAAECNKYSFCRFWTWEHQHSTNKPFTCWKHYGKCGTYINANVLSGNADC
GKKYVWCQPAYGRHYECKQEPIKTIPDVPTWQQCAGYCGGIPGCAFWTWN
HDAVITNAPSTCSLMAAGTCKLRPKYSSISGDQKCQQRCSN
Run BLAST on NCBI

transcript from alignment at scaffold_439:177138..177834

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065463 ID=TCONS_00065463|Name=TCONS_00065463|organism=Clytia hemisphaerica|type=transcript|length=697bp|location=Sequence derived from alignment at scaffold_439:177138..177834 (Clytia hemisphaerica)
ATCTACTCTTACTTGACCTAATCTTCCAACATGATTCACGCTGCTACTTA
CGCCATCTTTATCGCTTGTTTGGCGCTTCAATGCTGGGGTGCCGCTCCAG
GAGACAAATGCGATTTGATTAACGGGCGTGGATACCGAGGGTGTGATTTG
GGCGTTACAAAGGAGGGAAGTTGGGAAGAATGTGCAGCGGAATGTAACAA
ATATTCTTTTTGTCGATTCTGGACTTGGGAGCACCAACATTCGACAAATA
AACCTTTCACTTGTTGGAAGCACTATGGCAAATGTGGTACATACATCAAC
GCCAACGTGTTATCCGGGAACGCTGATTGcggcaaaaaatatgtctggtG
CCAACCGGCTTACGGCCGCCATTATGAATGTAAACAAGAGCCAATCAAAA
CGATCCCTGATGTACCCACGTGGCAACAATGTGCTGGATACTGTGGCGGA
ATACCAGGATGTGCATTTTGGACTTGGAACCATGACGCAGTTATCACAAA
CGCACCATCGACTTGTTCTTTAATGGCAGCAGGCACTTGCAAATTAAGAC
CAAAATATTCCTCAATTTCTGGCGATCAGAAATGTCAACAGCGATGCAgc
aattgaaaaacttttttttcgtgAAAAAAGCTAAATGTACACTTAAAAAa
ttactttatatatttttttagttttcattaTAATACGCTGTTTTGTA

Coding sequence (CDS) from alignment at scaffold_439:177138..177834

>TCONS_00065463 ID=TCONS_00065463|Name=TCONS_00065463|organism=Clytia hemisphaerica|type=CDS|length=576bp|location=Sequence derived from alignment at scaffold_439:177138..177834 (Clytia hemisphaerica)
ATGATTCACGCTGCTACTTACGCCATCTTTATCGCTTGTTTGGCGCTTCA
ATGCTGGGGTGCCGCTCCAGGAGACAAATGCGATTTGATTAACGGGCGTG
GATACCGAGGGTGTGATTTGGGCGTTACAAAGGAGGGAAGTTGGGAAGAA
TGTGCAGCGGAATGTAACAAATATTCTTTTTGTCGATTCTGGACTTGGGA
GCACCAACATTCGACAAATAAACCTTTCACTTGTTGGAAGCACTATGGCA
AATGTGGTACATACATCAACGCCAACGTGTTATCCGGGAACGCTGATTGc
ggcaaaaaatatgtctggtGCCAACCGGCTTACGGCCGCCATTATGAATG
TAAACAAGAGCCAATCAAAACGATCCCTGATGTACCCACGTGGCAACAAT
GTGCTGGATACTGTGGCGGAATACCAGGATGTGCATTTTGGACTTGGAAC
CATGACGCAGTTATCACAAACGCACCATCGACTTGTTCTTTAATGGCAGC
AGGCACTTGCAAATTAAGACCAAAATATTCCTCAATTTCTGGCGATCAGA
AATGTCAACAGCGATGCAgcaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041025XLOC_041025Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065463-proteinTCONS_00065463-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065463-exon-scaffold_439-1491911889:177138..177834TCONS_00065463-exon-scaffold_439-1491911889:177138..177834Clytia hemisphaericaexon
TCONS_00065463-exon-scaffold_439-1510915933:177138..177834TCONS_00065463-exon-scaffold_439-1510915933:177138..177834Clytia hemisphaericaexon
TCONS_00065463-exon-scaffold_439-1575043694:177138..177834TCONS_00065463-exon-scaffold_439-1575043694:177138..177834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:177138..177834 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.581602	0.141788	2.96334	2.7381	0	0.0774728	0.280403	0.175007	0.122526	0.0758843	0	0.145254	30.0258	26.3616	13.3752	36.1057	9.98738	20.2497	61.7483	43.4272	100.305	107.176	33.5928	54.9429	66.2688	64.2286	0	0.212776	0.161383	0.082212
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003609Pan_app
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065463 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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