TCONS_00065460 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065460
Unique NameTCONS_00065460
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length436

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065460 ID=TCONS_00065460|Name=TCONS_00065460|organism=Clytia hemisphaerica|type=transcript|length=436bp
CCAGATGAGACgtgtattttccacattttccacCGTCGCAATATCATAAT
GATACACATTCATTGGCGAAGGCAAGAATCTGGAAACCTTCTGGAGAATA
CCCTAGTGTCAGAAATCCGGTGGAGCAACCCCCCCCACCCCCACGGGAGA
ATTTAGCCAAAAAGTTGTCGTCGGTGGAATAAATAACCTGACATTTTACC
CAACTTTAAAAGAACCGAATGATTTTACCTTCAGTATGGTGGAAAGATTA
CACTgcaaaaccattcccactgtAAACTTAGGGCTGGAATATAGCGTTTC
TATCTCAATCAGGACACTACGAATACAGTATATAGAAATTGTTATCCACA
CTGAAAAgaaaagctccaccggggcggcACTGAGACAGTCGTGTGTGCGT
AAGAGAATGAAAAGAACGCCCAGAACGAAAAGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_439:97623..98058

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065460 ID=TCONS_00065460|Name=TCONS_00065460|organism=Clytia hemisphaerica|type=transcript|length=436bp|location=Sequence derived from alignment at scaffold_439:97623..98058 (Clytia hemisphaerica)
CTTTCTTTTCGTTCTGGGCGTTCTTTTCATTCTCTTACGCACACACGACT
GTCTCAGTgccgccccggtggagcttttcTTTTCAGTGTGGATAACAATT
TCTATATACTGTATTCGTAGTGTCCTGATTGAGATAGAAACGCTATATTC
CAGCCCTAAGTTTacagtgggaatggttttgcAGTGTAATCTTTCCACCA
TACTGAAGGTAAAATCATTCGGTTCTTTTAAAGTTGGGTAAAATGTCAGG
TTATTTATTCCACCGACGACAACTTTTTGGCTAAATTCTCCCGTGGGGGT
GGGGGGGGTTGCTCCACCGGATTTCTGACACTAGGGTATTCTCCAGAAGG
TTTCCAGATTCTTGCCTTCGCCAATGAATGTGTATCATTATGATATTGCG
ACGgtggaaaatgtggaaaatacacGTCTCATCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041022XLOC_041022Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065460-exon-scaffold_439-1491911889:97623..98058TCONS_00065460-exon-scaffold_439-1491911889:97623..98058Clytia hemisphaericaexon
TCONS_00065460-exon-scaffold_439-1510915933:97623..98058TCONS_00065460-exon-scaffold_439-1510915933:97623..98058Clytia hemisphaericaexon
TCONS_00065460-exon-scaffold_439-1575043694:97623..98058TCONS_00065460-exon-scaffold_439-1575043694:97623..98058Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:97623..98058 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.781448	0.914442	0.353918	0.692507	0	0.333099	1.80841	0.376226	1.07553	0.671905	1.26674	2.23413	0.831547	1.29535	1.41994	1.42858	1.87722	1.68358	1.3616	1.07596	0.755548	1.38074	0.358397	0.162918	0.839006	0.748793	0.215209	0.690165	0	0.176738
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065460 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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