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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065450 ID=TCONS_00065450|Name=TCONS_00065450|organism=Clytia hemisphaerica|type=transcript|length=2130bpRun BLAST on NCBI transcript from alignment at scaffold_439:567524..573824- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00065450 ID=TCONS_00065450|Name=TCONS_00065450|organism=Clytia hemisphaerica|type=transcript|length=6301bp|location=Sequence derived from alignment at scaffold_439:567524..573824- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00065450 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 5.258e-59 Identity = 180/653 (27.57%), Postives = 302/653 (46.25%), Query Frame = 3
Query: 204 AMHTAVRLINNDTNMLKNYELVLDYRDSTTLIGFSYLMFYDLVEKGPIKQMLIGPAFARATRAVAELTTRFKLPQVTYATLQKFGAREVPDPEIQQIGVPRVERHFPFLVKATPSLSSFNEAIVKIFQNFKWKRVAILYEYSAQQFFSTAYDLSLRLKSAGIEAAVIQGFSGTILTVDAQLDAILEKDVRIIFGIFSSKGARRIFCQAYKRGIYGLKYQWLTVSTLKSTWWKPV-TYNEPQNCTVKQYLTASDGYMSIANTNVRRDGVRSIGGQTAEEIWDLMKRQKAHDYFRYMKEAGLSNEPPPIDNEIKEESAFAFDAVYLAAITLDKIIKTKGKGALMT-----EYFNESQALYMTDVMLNSSFEGLTGRLHYGGKSGEERQGIVRIQQFRSNYTQVTHNISISRAELHDIGHFDIESKVIDIYDKTGMTLFKGGRVIKDRKTINRIPETYSLTTIGILWGLAAAGLVLCICVLFINVKYRNIRMIKMXXXXXXXXXXXXXXXCYASVVVYGLDSRFLTPRGIGIACNAVTIALSIGFTLSFGCLFTKTWRIYKIFTAAKTMEKVSIKDTHLYFIITLLVSIDIFVFLLWVFLSPF--NVEESELEQIVYQNADVIDSFFYHKCTCEYQLHFTV---TMYCYKGFLLIF 2129
A+ A+ I N++ +L+ Y L L D+ FYD ++ GP M+ G T +AE + L Q+++A A + + +P+ + PS ++ N AI+K+ ++++WKRV L + Q+F DL+ L IE + + FS T +L DVRII G F A ++FC AY+ +YG KYQW+ + +WW+ V T C K L A +GY+ + + +++I G+T + Q +Y G S + +A+D +++ A TL + ++T + Y + + + + M ++F G+TG++ + ++GE R G ++ QF+ SR +G ++ + ++I + T F+G KD+ I SL IL L G+++ LF N+K RN ++IKMSSP +NN II G ++ YAS+ ++GLD F++ + C T L++G+T +FG +F KTWR++ IF K M+K IKD L I+ ++ ID+ + + W + P VE+ +E I H CE H T+ +Y YKG L++F
Sbjct: 80 AVELAIEQIRNES-LLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLMVFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADK---------------KKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQ-DVQRFSEVRNDLTGVLYGEDIEISDTESFSNDPCTSVKKLKG---NDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGWYEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQ--------QYEREYNNKRSGVGPS-----------KFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF--RNGE-RMGTIKFTQFQD-----------SREV--KVGEYNAVADTLEIINDT--IRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVK-MKKKIIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEH---CE-NTHMTIWLGIVYAYKGLLMLF 670 The following BLAST results are available for this feature:
BLAST of TCONS_00065450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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