TCONS_00065440 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065440
Unique NameTCONS_00065440
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length896

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065440 ID=TCONS_00065440|Name=TCONS_00065440|organism=Clytia hemisphaerica|type=transcript|length=896bp
TAAGAAATGTATaaaatttcaaaggaaaatttatgaaaacaaaattccAA
TCAACATGGATCAAGAGTTGAAAAACTTAGAAAGTTCAACTGTGGACCTA
TCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGTTCATTtgggaaaaac
tggaaaaacaaaaattgtgaAATCTGATGATCCCAAAAAGCTAACTCCAG
GAACAACACTACCATTGGGAATTCCACCAGTCTATCCAGAGTTAAAGGAT
GTAATTGAACAATTACTCTTGTCACCTGGTGATATTCCTATTCATGCATT
TCAACATTCTCAAAAAGTTTGGGAGCGTGAGAAAGATGTAGAgagtttgt
ttgatttgaatttaacaCCAATAGCTACTGAGATTGTTATGGAAAGAGAT
CCAAAAACCGGAAAATTGCAAGCTATAAAAGAAggggtatgaAACTACCA
TCACTAGACAAAATGTTGACATTGGAGGATCATGATACTGAAGTTATTGA
TTTATCACCAAaaAGTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCG
TCAATTTTGAGCTGCCAACGTCAAACTCCAGTGAAGCTAAAGAGTCCACC
ATTCCAGATGATATGTTTGACACCAAACCAGTCAACATTTCTGACATTTT
GACCATGGATGTTGATTTGAGTGAACTCTATGTGGATGTTGAGGAACCAG
AAGGTGAGACCTGCTCCAAAGAAAGTCCTGTCGATATGGCATATACTGTC
GAAGAAGATATCCCAGAAAACGTGCTCAAGgttgaAGAGACGAAGGATTG
GAAGAAGCAACATGAAGGTGATAAGAAATGGTCTACTTTGGATCAATCAG
ATGTCAGCGATTTTCATAAACAAGTTCCTGATATGGCTTTCAAGGT
Run BLAST on NCBI

transcript from alignment at scaffold_439:502391..505921-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065440 ID=TCONS_00065440|Name=TCONS_00065440|organism=Clytia hemisphaerica|type=transcript|length=3531bp|location=Sequence derived from alignment at scaffold_439:502391..505921- (Clytia hemisphaerica)
TAAGAAATGTATAAAATTTCAAAGGAAAATTTATGAAAACAAAATTCCAA
TCAACATGGATCAAGAGTTGAAAAACTTAGAAAGTTCAACTGTGGACCTA
TCAAAGGTTTCAGAAGAGTTGAAAATTGATCTGGTTCATTTGGGAAAAAC
TGGAAAAACAAAAATTGTGAAATCTGATGATCCCAAAAAGCTAACTCCAG
GAACAACAGTAAGTATTGAAAATCAGTCTCACTGATTTCTTAAAAAACAT
TAGATTATTTCTGTAACTGAACTCGAGAATTATTCTGCCATAAAACTTGA
ATTTATATTGAAATTCATAACAAACTTTTGAAAAATATCTGAGTAAAATA
TGGTGAAATAAAGAACTAGCTTAGATACAATCTTAAACAAGCTGCATTGC
CTGAAGAGAGCATCATTGTGAAACAAGCAATTATATAAGTTAGTTCTTTA
TTGTCGATAGTGCTACAATATATATTATAGAAAATCTAAAAAATTTTAAA
TATATTTTCATTTAGCTACCATTGGGAATTCCACCAGTCTATCCAGAGTT
AAAGGATGTAATTGAACAATTACTCTTGTCACCTGGTGATATTCCTATTC
ATGCATTTCAACATTCTCAAAAGTAAATGACTTCATACTGTTATTAATTA
TAGGTACATGTTCTGGGACATGTGACTTGTGCCTTGTCTATTCCAAAGGT
TGTGTTATGCATTTAACTTGAACTGAGTAAAGTCTCTCACACATACTTTA
AATGTTCGAGATCGAATATTAATTAATCTAAGGTGCTGTGGCTCATAATA
CTGCTTACAATGGATTTACGATTCATTGCCTAGGAGAAAGACCAAAACAA
CGTCTAGTCTGTCCATATCTTCTGACGACTGGACGACAGATGAAGATTAG
ACAATATTTTATAAATTTAAAATTATTTCGTAGAGGTCGATAGACATGTG
AAATATAATTCTACGAATAAATAAATTACTTTGCTTTTTTAGAGTTTGGG
AGCGTGAGAAAGATGTAGAGAGTTTGTTTGATTTGAATTTAACACCAATA
GCTACTGAGATTGTTATGGAAAGAGATCCAAAAACCGGAAAATTGCAAGC
TATAAAAGAAGTAAGCCAATATCTACATTTCCTTATTTAACAGGTCCTGT
TGAGTTTATTGTTCTCAAATATACTTTGAATAATTTAAGCTTTAGAATAT
CATCCTTACCATTACTTCAAGCTGTTAATGATCAATGTCATAAAAGAGGG
TGGGCTTGGCAACAAACCGGCAATATTGCTCAAATTATTTACCTTTCCTC
ACTTGCAACCAATTGTTTTAAAAGCTACACTCTTAAAATCAATTAGCTTG
CTGTGCTATTTTTTTATGTTANAAATCATCAAAAACAGCGTAGTAGAATC
TTTTTACTCTATTTTGTATTCAGTTTAGGTAGATTTATTCCAGTAATTTA
GCTTCTCCATCCAAAGTAAGGCTCAACAAAATAATTAAAAAACCAAGAGA
ACTTTTTATCTTGATTTTGATAACTTTGATAACGTCAATTTCTTTCTTTT
TTTTCCAGGGGGTATGAAACTACCATCACTAGACAAAATGTTGACATTGG
AGGATCATGATACTGAAGTTATTGATTTATCACCAAGTATGTTGTTATTT
CTATTGAAGTATTTTCTTGACTTATTCCTAAGTTAAGATTTAGTTGGCTT
TCCTATCAGAGACCTGAAAATCTAAAACTGACCTTCTATTTTCAATTTAA
TGTAGCTGAATATTTTCAGTGGAATATTTTCAACCAAATATGTTTTCTAT
GATGATTCCAAACCACTTCTTCAATTTTCATTTCAGAAAGTCTACTTACA
CAACCTCCAGGGCTTAGCCTTTCCGTCAATTTTGAGCTGCCAACGTCAAA
CTCCAGTGAAGCTAAAGGTATTTTTGAAAAGGTTTTTCATTGGAACAATT
AATTTACTTTAAATAATCCAGGGTAGCTAAAAAATTCAGTTTTTATCATA
ATGAAGAGCTGTTACGAATTATGCTTCAATTTACTTTCAAGACGTGNTTT
TAAAAAACTGACTTTTTTTCCATGTCAAAATTTCAAAAAATCATCAAAAA
CAGCGTAGTAGAATCTTTTTACTCTATTTTGTATTCAGTTTAGGTAGATT
TATTCCAGTAATTTAGCTTCTCCATCCAAAGTAAGGCTCAACAAAATAAT
TAAAAAACCAAGAGAACTTTTTATCTTGATTTTGATAACTTTGATAACGT
CAATTTCTTTCTTTTTTTTCCAGGGGGTATGAAACTACCATCACTAGACA
AAATGTTGACATTGGAGGATCATGATACTGAAGTTATTGATTTATCACCA
AGTATGTTGTTATTTCTATTGAAGTATTTTCTTGACTTATTCCTAAGTTA
AGATTTAGTTGGCTTTCCTATCAGAGACCTGAAAATCTAAAACTGACCTT
CTATTTTCAATTTAATGTAGCTGAATATTTTCAGTGGAATATTTTCAACC
AAATATGTTTTCTATGATGATTCCAAACCACTTCTTCAATTTTCATTTCA
GAAATTCTACTTACACAACCTCCAGGGCTTAGCCTTTCCATCAATTTTGA
GCTGCCAACGTCAAACTCCAGTGAAGCCAAAGGTATTTTCATTGGAACAA
TTAATTTACTTTAAATAATCCAGGGTAGCTAAAAAATTCAGTTTTTATCA
TAATGAAGAGCTGTTACGAATTATGCTTCAATTTACTTTCAAGACGTGTC
TGTTTTACCATTAAAAGATGCACTTTTACCAATCTAAATTATAAATCAAA
CTTTTTCCAAACGAGCGAAAGCACCTAAATTTCATTACAATTACTTCATT
TGCGCCAGTTAGGAGTACAATGTCATTATCACTTATCTCATAAAAAGTAT
ACCTTCCGTTTCAATTTAGAGTCCACCATTCCAGATGATATGTTTGACAC
CAAACCAGTCAACATTTCTGACATTTTGACCATGGATGTTGATTTGAGTG
AACTCTATGTGGATGTTGAGGAACCAGAAGGTGAGACCTGCTCCAAAGAA
AGTCCTGTCGATATGGCATATACTGTCGAAGAAGATATCCCAGAAAACGT
GCTCAAGGTAAGGAAAGTGTTACTGTTATGGTTGTCCCCAACAATTTTGA
ATACAGTGATTTAAGAAGTGATTGATATCATTGTTCTTCATAGTACTGTT
AACCTGATAGGAAAGTTTCTGTCAATTTTTTATAAAGGAACCGGTAATTT
TTGGCTCAGCCTGAGATTGTTCTTAACTTTCTATTATCCCAAACAATAGA
GCTATTGTTCTGAGTGCCTAAATCTTAGGCTGGTGTTCTTATAAAATTGT
TTTTATAAAAAAAAGTGTGTATTATTTATCTTTGAAGATGTCATTCTATA
TTTGTATTTTTAAAGGTTGAAGAGACGAAGGATTGGAAGAAGCAACATGA
AGGTGATAAGAAATGGTCTACTTTGGATCAATCAGATGTCAGCGATTTTC
ATAAACAAGTTCCTGATATGGCTTTCAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041009XLOC_041009Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065440-exon-scaffold_439-1575043694:505714..505921TCONS_00065440-exon-scaffold_439-1575043694:505714..505921Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1575043694:505300..505406TCONS_00065440-exon-scaffold_439-1575043694:505300..505406Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1575043694:504812..504929TCONS_00065440-exon-scaffold_439-1575043694:504812..504929Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1575043694:504286..504363TCONS_00065440-exon-scaffold_439-1575043694:504286..504363Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1575043694:504005..504085TCONS_00065440-exon-scaffold_439-1575043694:504005..504085Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1575043694:502815..503002TCONS_00065440-exon-scaffold_439-1575043694:502815..503002Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1575043694:502391..502506TCONS_00065440-exon-scaffold_439-1575043694:502391..502506Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:505714..505921TCONS_00065440-exon-scaffold_439-1510915933:505714..505921Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:505300..505406TCONS_00065440-exon-scaffold_439-1510915933:505300..505406Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:504812..504929TCONS_00065440-exon-scaffold_439-1510915933:504812..504929Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:504286..504363TCONS_00065440-exon-scaffold_439-1510915933:504286..504363Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:504005..504085TCONS_00065440-exon-scaffold_439-1510915933:504005..504085Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:502815..503002TCONS_00065440-exon-scaffold_439-1510915933:502815..503002Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1510915933:502391..502506TCONS_00065440-exon-scaffold_439-1510915933:502391..502506Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:505714..505921TCONS_00065440-exon-scaffold_439-1491911889:505714..505921Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:505300..505406TCONS_00065440-exon-scaffold_439-1491911889:505300..505406Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:504812..504929TCONS_00065440-exon-scaffold_439-1491911889:504812..504929Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:504286..504363TCONS_00065440-exon-scaffold_439-1491911889:504286..504363Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:504005..504085TCONS_00065440-exon-scaffold_439-1491911889:504005..504085Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:502815..503002TCONS_00065440-exon-scaffold_439-1491911889:502815..503002Clytia hemisphaericaexon
TCONS_00065440-exon-scaffold_439-1491911889:502391..502506TCONS_00065440-exon-scaffold_439-1491911889:502391..502506Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:502391..505921 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.03436	6.00376	2.70458	2.16013	3.59405	0.245435	8.8593	8.46633	0	6.64568	5.00219	0	3.86489	2.8847	3.8495	2.84291	2.01229	2.67873	2.57515	2.23149	3.00511	2.75551	6.06985	5.83916	10.1114	11.1667	1.98579	0.573977	5.57742	7.89723
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065440 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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