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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065432 ID=TCONS_00065432|Name=TCONS_00065432|organism=Clytia hemisphaerica|type=transcript|length=2413bp
CTTATAAAGAAGAGGTTATCATAGAATTGGTTAAAAGACATGGACAACTT
CGATCAAAGTTTCAGGCGGAAGAGAAATATCTTCAGGAAACATtgacaac
aaaagaaagacaCTTGAATGAAATTATTATGAAAGTACGATACGAGTCAG
ATATGAAACAACGTGAATTGTTCGATGCGAGGGATAAAAACGGATATTTA
GTTCAATCACTCAAGAAACGAGATCAGCAATTGCTTCTTGAGGTCCAAGC
TCGGGAAAACTTAGAGCAAAGCTTAGACGCGACACAAAAAGATTTCAGAC
GATCTCAAGAAGATCTTGAACGTGCATTGAACTCTTTGAACGAAACCGAG
AACAAGTGTAAGAAGCTGGAAGATGAAAAGAAGTACTTGATGGAGGAACG
TGATATCAGTATTAACTTTGACGAGTGGGGAGCATCAAAGACTAACTTTG
CCAATTACACAAAATCGCACGAAAATATGTTCCTTGATATTAAAAACTCC
ATTGACACACCTCCCGCCAGCAAATCATTTGCCAATACATACTTAGAACT
ACGTCAATCCAACAACGTAAAAAATAAGCAGGCTTTAGTACCAGTCGAAC
CGACAATTCTGCCACTTAAAGTACCTCTTGTTGAacgtggcaaaacgatg
gaagAATTCTTGGCAAAGAATTCTTTTGATAGATTGGATGACTGTTCAAA
GGATGTTCCTATGGATAGTATAGAGAGACTTAATTGCAAGATTGTTGAAA
AACCGACAACCAAAACAATGGTCGAAAACAGTCTTTCAACAAAGGAAAGA
ATCTTAGTTAAGGAATCGTCTACAAAGACATTAAAAGATAATCCTGTAAT
GGAAAACATGGCTACCACGAGAACCAACTCATATTTGCAAGAGCCAACAA
AAAAAGCAGCTAGAAGTCCGAGTGAGCCGACCATTCTCCCACTGAACATT
TCTAACTCTGCAAACAGCAAACCGACTGATCTACTAGCGTTAGATGACAG
TTCTAGCGCCCCAAGCCCTAGTGATGGTTTGGTGTCTGCAACCCCAAGCA
CTAGCATTTCAACAAAGTTAACCAAAAGCAGAGTTGGTATTAGAGAACCA
AGCGAACCAACCATTTTACCTTTGAACTTCCCTGTATGTCAATATAATTC
ACAAGATAGCCTTGTGACTTTACAAAAGAACATAACCTGTCAAGATAATG
TAAAGAACCTATCACCTAAACCAAGCTTGGATTCGAATCTCGATGAGGAT
TGTTATGTAGCTCCCAAATCAAGTTTCGTTACTACTCTTTGTAAAGAGTC
ACGCAAAACGAACATTAAAAGTAAACAAATGGTTTTGACTCTGAAGGAGC
CAGTTATCAAGCCTTTAAATATTACTCCTTCGAAAAGTTATCGGAAACAT
CAAGATGTTCTATATGAAGCCGATTGTCACATAACTCCAAAAACAAGTTT
CAACTCCACTGTTACCGATAAGCAATTCAAGTCACcgagcaaaaacaaaa
atattgttttaGCACCAACCGAGCCAGTTATTATGCCATTGAATATCAAA
TGCAATAGACCACAACCAAAAGTTCAGCGCCCAATAAATTGTCATCAACC
TCCAAAGTCGAGAAGCTTTGACTCCATACTTTCATTAGAACCACTTAAGG
TACAGAGGAAAAATAAGAAGTTAGTTCTTACACCAAGCGAGCCCATCATT
TACCCTCTGAACATATGTCGCTCAGCAACAAGTTCAAAAGTAAAACCAGG
ATTGAAGATTCCTTCCAGCGAATCTAGTGATAATGACAAGGACAGTAATT
CTGATAACTCGCTTGATAAGACAATTGAAACCAATATGCTCAACATCAGA
TTTGATGGCGCGTTCAATGGAAAGTCTTCCATCGTTGAAACAACTAACAA
CAACTCTTACGACAACATGGATGTAGATATGATAATTTCGACTGAATGCT
CAAACAAGAACAGAGAACCCAATATGGAGCTTGTCAAATTCGAAAAGAAA
TCTTTGCTGACCAGAATCACCAACAAAGTTATTCAAACATTTATATGTCT
TTTGTTCTGTCCCTTTCAAATTATATACGACATTATGAGAATTACGGAAC
AAGTATTTTTTAAAGGGTTCAATGACTCTGAAACACAAATCAAAGTTGGT
GACAGTGATGGGAAACGCAATGGTATGATGGAGATAATATGGAGTGATAT
ACCCACCAACCAGTCGAAAGTTTCTACTACTTCTTCAACAAACCTCACGA
ACCGTGATTCAAATCACAAAGATGCAGACAAATCCAACACAACAACACAG
TATTAAGAAATACAGATGAATCGATTGCTACATGACACTAAAAAAAGATg
actaatttattttttaattgattaactaatttatatacttttataataaa
aaataatttaaaa Run BLAST on NCBI transcript from alignment at scaffold_439:431656..437581- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065432 ID=TCONS_00065432|Name=TCONS_00065432|organism=Clytia hemisphaerica|type=transcript|length=5926bp|location=Sequence derived from alignment at scaffold_439:431656..437581- (Clytia hemisphaerica)
CTTATAAAGAAGAGGTTATCATAGAATTGGTTAAAAGACATGGACAACTT
CGATCAAAGTTTCAGGCGGAAGAGAAATATCTTCAGGAAACATTGACAAC
AAAAGAAAGACACTTGAATGAAATTATTATGAAAGTACGATACGAGTCAG
ATATGAAACAACGTGAATTGTTCGATGCGAGGGATAAAAACGGATATTTA
GTTCAATCACTCAAGAAACGAGATCAGCAATTGCTTCTTGAGGTAAGGGA
TTTCCAAAGTCACTCCAAATCTCTTTTATTTGGTAGAAATGTTTTGGTTC
CTACAACTCAAGTACTCGTAGGTTCCANCTGTAAGCCTCGATGATATGTC
TTTTTAAGATAACGGAAGTTTGTGTTCAATGAAATACCATAGTGACCCTG
TTAAAATTATCGAGGGTACCTGTCGTTGCAGACGCCCAAAGGTGTCTGAA
GTGGTGAGAGGGTTTNGCCCTTCTAATTAAATTAGCGTATTAAATTTTTC
TTAAAGATATAAATTTGGAAAACTTTATGCTCATCTAAAATAATCGGGGT
AGTCCTCCGGCTTGAACAAACTGTATTAGGATTCTAGCCGTGCTGTAAAC
AAAAACGTTTACACTCAAATACACGTTTCTTCAGGTTTCTTAATAAGAAC
AAACTATACAAGAACATAAGGTTTCGATGGCTAAAATATTAGGGACATTC
GAAGGCTTCAAAAATTTTGGGTGTTCTTATAAAGAAAAACGTGTACGAAA
ATGGTCTAGTCTAGGGACGATTAGGCATTAAAATACAAATAATTACACGT
TTTTTTTTCTCATAGGACCCGATGACTCTATGCGACGAGCTCAAAAACAT
TCAAAGTCAATTCAAAATAAATCAGAGCAAAATTATTTCTTTCATCACCG
AACCAACCCTCACTAAGAAGCTGTCACATGACAGTGGTGTCATCTTGAAT
CACTTTCAAAGTCTGGGATCAAATTTTTCGGCTAGATGTGGAAAGTCAAA
ATCGGAGATTCTATTACGAAAAGTAAGCACCGGTAATTCAGTTGAAAATG
TACGGAAAACTATGAATAGTCAGAAAGATAACTTTATACAAGATGTGAAG
CCCGATGGAAGTCATAATAGTGGAGTTATTCCTACACCACCATTTTTATC
AATCAATTCACCAAAGAAACATATGGAAACTGTAAAGAAAATTACATTCT
TGGAGGAGAACAATGGTCCAGTATTGAAGAAAACTTCGGTAGAGAACGTC
ACAGGTTCGATAACAGCAATTGCCAATGTTTCGCCCAAAAAAAATGTTGA
TACATCGTTTACTAAGAATGTTGATGTTGTATCGGAGGACAATCTAGAAA
GAAGCGAACCATCCACAGGTGCAGGTGAAATTTCAATTCGAGAAGATGCC
TCAAAGGAAGATTGTAGACAAAATACAAAATCGCTTGTTGAAATCAGAAC
AAATGATTTGAATAGAATTCCTACGCAGCTCTCAACTAGAATCACGACTG
ATGACAGAACCTTGGTCAAAGCAATTGAATCCTTAAAAATCAAGCTTGCA
CAAAGCGAAATAAAGTGTCAACAACATGAATTGAAAATGGCTTCATTTTC
ACAAACATTAGCTTATAAAGAAGAGGTTATCATAGAATTGGTTAAAAGAC
ATGGACTACTTCGATCAAAGTTCCAGGCGGAAGAGAAATATCTCCAGGAA
ACATTGTCGACAAAAGAAAGACACTTGAATGAAATTATACTGAAAATACG
ATACGAGTCAGATATGAAACAACGTGAATTGTTCGATGCGTGGGATAAAA
ACGGATATTTAGTTCAATCACTCAAGAAACGAGATCAACAATTGCTTCTT
GAGGTAAGGGATTTCCCAAGTCTCTCCAAATTTCTTTTATTTGGTAGAAA
AGTTTTGGTTCCTGCAACTCAAGTACTCGTAGGTACCAAATAAACGCCTC
CCCCCCGCTTGTCAATTTTTCGAAAATTTTCCAAACCCTCCGGACGTTAT
TAGGACTCCCCCTCCCGTTTATTATTTTTTTTCAACTTTTAAAAAGAAGG
TCCCTCATTCTGCTCTAAATTGCCTGATTTTAGCCTATATTTACCTTATT
TTTGGGTTTTCGTAAATACAATTTCCAACCCCCCCGGCAATTAGGTCCCC
CCGTTTATTAAAATTTTGAAAATTTTCCAACCCCCCCTGTTTATTCGATC
CCCCCTCCCGTTTATTTGGAACCTACGAGTAAAATATAACTCAAACACCG
ATCAAAATCAACATCTTTATGGTTCTTCGTTTGTTTTAGGTCCAAGCTCG
GGAAAACTTAGAGCAAAGCTTAGACGCGACACAAAAAGATTTCAGACGAT
CTCAAGAAGATCTTGAACGTGCATTGAACTCTTTGAACGAAACCGAGAAC
AAGTGTAAGAAGCTGGAAGATGAAAAGAAGTACTTGATGGAGGAACGTGA
TATCAGGTAAGCAAAAATCTGCTCCATAATATACGCTGAATATTTTTCCT
ATTATTATGGTAATTTAACGTGAACATTTTTTCCGGATGATGAAAATTGA
TTGCGCTCCCATAATAACGGCTTCCCATTTGTGAGAAACATAAACTCCAA
AATTTTAGACCAAAAGAAAGTCTTTTCTTATTCATAATTAAAGAGCTGCA
ACTAAAACATTTCTTCACTATTTCTAATTGCAGTATTAACTTTGACGAGT
GGGGAGCATCAAAGACTAACTTTGCCAATTACACAAAATCGCACGAAAAT
ATGTTCCTTGATATTAAAAACTCCATTGACACACCTCCCGCCAGCAAATC
ATTTGCCAATACATACTTAGAACTACGTCAATCCAACAACGTAAAAAATA
AGCAGGCTTTAGTACCAGTCGAACCGACAATTCTGCCACTTAAAGTACCT
CTTGTTGAACGTGGCAAAACGATGGAAGAATTCTTGGCAAAGAATTCTTT
TGATAGATTGGATGACTGTTCAAAGGATGTTCCTATGGATAGTATAGAGA
GACTTAATTGCAAGATTGTTGAAAAACCGACAACCAAAACAATGGTCGAA
AACAGTCTTTCAACAAAGGAAAGAATCTTAGTTAAGGAATCGTCTACAAA
GACATTAAAAGATAATCCTGTAATGGAAAACATGGCTACCACGAGAACCA
ACTCATATTTGCAAGAGCCAACAAAAAAAGCAGCTAGAAGTCCGAGTGAG
CCGACCATTCTCCCACTGAACATTTCTAACTCTACAAACAGCAAACCGAC
TGATCTACTATCTTTAGATAACAGTTCTAGCGTCCCAAACCCTAATGATA
GTTTGGTGTCCTCAACCTCAAGCACTAGCAACCCATCAAAGGTAACCAAA
AGCAGAATTGGTATTAGAGAACCAACCGAACCAACCATTTTGCCTTTGAA
CTTGTCAGTATGTCAACATAATTCACAAGAGAGCCTTGTGACTTTACAAA
AGAACATAACCTGTCAAGACAATGTAAAGAACCTATCACTTAAACCAAGC
TTGGATTCGAATCTCGATGAGGATTGTTATGTAGCTCCCAAATCAAGTTT
CGTTACTACTCTTTGTAAAGAGTCACGCAAAACGAACATTAAAAGTAAAC
AAATGGTTTTGACTCCGAAGGAGCCAGTTATCAAGCCTTTAAATATTACT
CCTTCGAAAAGTTATCAAAATCATCAAGATGTTCTATATGAAGCCGATTG
TCACGTAACTCCAAAAATAAGTTTCAACTCCACTGTTACCGATAAGCAAT
TCAAGTCACCGAGCAAAAACAAAAATATTGTTTTAGCACCAACCGAGCCA
GTTATTATGCCATTGAATATCAAATGCAATAGACCACAACCAAAAGTTCA
GCGCCCAATAAATTGTCATCAGCCTCCAAAGTCGAGAAGTTTTGACTTCA
TACTTTCATTAGAACCACTTAAGGTACAGAGGAAAATTAAGAAGTTAGTT
CTTACACCAAGCGAGCCCATCATTTACCCTCTGAACATATGTCGCTCAGC
AACAAGTTCAAAAGTAAAACCAGGATTGAAGATTCCTTCCAGCGAATCTA
GTGATAATGACAAGGACAGTAATTCTGATAACTCGCTTGATAAGACAATT
GAAACCAATATGCTCAACATCAGATTTGATGGCGCGTTCAATGGAAAGTC
TTCCATCGTTGAAACAACTAACAATAACTCTTACGACAACATGGATGTAG
ATATGATAATTTCGACTGAATGCTCAAACAAGAACAGAGAACCCAATATG
GAGCTTGTCAAATTTGAAAAGAAATCTTTGCTGACCAGAATCACCAACAA
AGTTATTCAAACATTTATATGTCTTTTGTTCTGTCCCTTTCAAATTATAT
ACGACATTATGAGAATTACGGAACAAGTATTTTTTAAAGGGTTCAATGAC
TCTGAAACACAAAAAAAGGCAGCTAAAAGTCCGAGTGAGCCGACCATTCT
CCCACTGAACATTTCTAACTCTGCAAACAGCAAACCGACTGATCTACTAG
CGTTAGATGACAGTTCTAGCGCCCCAAGCCCTAGTGATGGTTTGGTGTCT
GCAACCCCAAGCACTAGCATTTCAACAAAGTTAACCAAAAGCAGAGTTGG
TATTAGAGAACCAAGCGAACCAACCATTTTACCTTTGAACTTCCCTGTAT
GTCAATATAATTCACAAGATAGCCTTGTGACTTTACAAAAGAACATAACC
TGTCAAGATAATGTAAAGAACCTATCACCTAAACCAAGCTTGGATTCGAA
TCTCGATGAGGATTGTTATGTAGCTCCCAAATCAAGTTTCGTTACTACTC
TTTGTAAAGAGTCACGCAAAACGAACATTAAAAGTAAACAAATGGTTTTG
ACTCTGAAGGAGCCAGTTATCAAGCCTTTAAATATTACTCCTTCGAAAAG
TTATCGGAAACATCAAGATGTTCTATATGAAGCCGATTGTCACATAACTC
CAAAAACAAGTTTCAACTCCACTGTTACCGATAAGCAATTCAAGTCACCG
AGCAAAAACAAAAATATTGTTTTAGCACCAACCGAGCCAGTTATTATGCC
ATTGAATATCAAATGCAATAGACCACAACCAAAAGTTCAGCGCCCAATAA
ATTGTCATCAACCTCCAAAGTCGAGAAGCTTTGACTCCATACTTTCATTA
GAACCACTTAAGGTACAGAGGAAAAATAAGAAGTTAGTTCTTACACCAAG
CGAGCCCATCATTTACCCTCTGAACATATGTCGCTCAGCAACAAGTTCAA
AAGTAAAACCAGGATTGAAGATTCCTTCCAGCGAATCTAGTGATAATGAC
AAGGACAGTAATTCTGATAACTCGCTTGATAAGACAATTGAAACCAATAT
GCTCAACATCAGATTTGATGGCGCGTTCAATGGAAAGTCTTCCATCGTTG
AAACAACTAACAACAACTCTTACGACAACATGGATGTAGATATGATAATT
TCGACTGAATGCTCAAACAAGAACAGAGAACCCAATATGGAGCTTGTCAA
ATTCGAAAAGAAATCTTTGCTGACCAGAATCACCAACAAAGTTATTCAAA
CATTTATATGTCTTTTGTTCTGTCCCTTTCAAATTATATACGACATTATG
AGAATTACGGAACAAGTATTTTTTAAAGGGTTCAATGACTCTGAAACACA
AATCAAAGTTGGTGACAGTGATGGGAAACGCAATGGTATGATGGAGATAA
TATGGAGTGATATACCCACCAACCAGTCGAAAGTTTCTACTACTTCTTCA
ACAAACCTCACGAACCGTGATTCAAATCACAAAGATGCAGACAAATCCAA
CACAACAACACAGTATTAAGAAATACAGATGAATCGATTGCTACATGACA
CTAAAAAAAGATGACTAATTTATTTTTTAATTGATTAACTAATTTATATA
CTTTTATAATAAAAAATAATTTAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065432-exon-scaffold_439-1575043694:437340..437581 | TCONS_00065432-exon-scaffold_439-1575043694:437340..437581 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1575043694:435126..435292 | TCONS_00065432-exon-scaffold_439-1575043694:435126..435292 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1575043694:434361..434898 | TCONS_00065432-exon-scaffold_439-1575043694:434361..434898 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1575043694:431656..433121 | TCONS_00065432-exon-scaffold_439-1575043694:431656..433121 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1510915933:437340..437581 | TCONS_00065432-exon-scaffold_439-1510915933:437340..437581 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1510915933:435126..435292 | TCONS_00065432-exon-scaffold_439-1510915933:435126..435292 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1510915933:434361..434898 | TCONS_00065432-exon-scaffold_439-1510915933:434361..434898 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1510915933:431656..433121 | TCONS_00065432-exon-scaffold_439-1510915933:431656..433121 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1491911889:437340..437581 | TCONS_00065432-exon-scaffold_439-1491911889:437340..437581 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1491911889:435126..435292 | TCONS_00065432-exon-scaffold_439-1491911889:435126..435292 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1491911889:434361..434898 | TCONS_00065432-exon-scaffold_439-1491911889:434361..434898 | Clytia hemisphaerica | exon |
| TCONS_00065432-exon-scaffold_439-1491911889:431656..433121 | TCONS_00065432-exon-scaffold_439-1491911889:431656..433121 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:431656..437581 - |
Blast
The following BLAST results are available for this feature:
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