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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065431 ID=TCONS_00065431|Name=TCONS_00065431|organism=Clytia hemisphaerica|type=transcript|length=1172bp
CCGGCTTTTATTATTAGGTTTCAAGTTTGTGAGGACCGGTCGAAGAAATC
CGGAAATGTCTAGATCAGTGTAGATCCCAGGCAATAGTAAATAAACCAAC
CTAGATACAGATCATCAAACCTCAATTATTTTTTGTTGCACGACTCAGTA
AGCACCGGCAAGCACCTCTGACTGGTTTGTGAGCAAAGTAAGATTTTAGG
TTAGTTTCAAAATGGTAGTGGTGGCtatcgaaatcaaaacaaaagcacgt
gctttctgttttttcttttttggaatcCAATCCAGAAATCCGCGTGACTG
AGAATTAAACTTAAACCAGAACAAAAGGACTAATGTTATGGCTCCTGCTA
GAAAGAAACGAAGGACTACTGATAACATTGTCAAGGATGAAAACTTGGAT
AAAGTTTCAAAAGACTGTAAGAAGGAACCAGCGGCTGAAAATAATGAACA
GAAATTTTGGTTGATGAAGTCAGAGCCAGAGACAAGAATTGAAAAAGGAG
TTGATGTCAAGTTTGGCATTGAAGATCTTAAAAAGGAGCCAAAACAAACT
GCCTGCTGGGATGGTGTCAGAAATTATCAAGCACGTAACTTTATGAGAGA
TCAAATGAAAGTTGGTAACAAAGCATTCTTCTATCACAGTAATTGTAAAG
TCCCGGGCATCGCTGGAATTATGACAATCGTAAAAGAAAGCTACCCTGAT
CATACACAGTTTGATTCTAAAGATGTACATTTTGatccaaaatcacaaaa
agaaaatccaaaatggtTTATGGTGGATGTCAAGTATGAGCGAATGATGA
AAAGATATATTGGTCTCCCAGAACTTAAAAAACTTCATTCAGAACACAAG
TCTTCCCATGGTCCTTTGAAATCCGTCGCTTTGTTTACAAGAGCTCGCCT
TTCGGTGCAACCATTAACCAAAGAAGAATATGATTACATTTTGACTCTGG
AAGAAGTTGAAGAACCGTAATCTTTGACACCATTATAGACGCTAAActtt
tatacattttctgtttatattgtaaatattttgggaaataaaaatccttt
ttctttttacttttgaagTTGGGTCCAAATTGTCTATTGAAATcctaaaa
tcaatcaattaattaGTAAACGCAAGGTTGTGCAGACTTAATATCTTTTT
TGTTATTCCACCTAAAGGCCAA Run BLAST on NCBI transcript from alignment at scaffold_439:421158..426381- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065431 ID=TCONS_00065431|Name=TCONS_00065431|organism=Clytia hemisphaerica|type=transcript|length=5224bp|location=Sequence derived from alignment at scaffold_439:421158..426381- (Clytia hemisphaerica)
CCGGCTTTTATTATTAGGTTTCAAGTTTGTGAGGACCGGTCGAAGAAATC
CGGAAATGTCTAGATCAGTGTAGATCCCAGGCAATAGTAAATAAACCAAC
CTAGATACAGATCATCAAACCTCAATTATTTTTTGTTGCACGACTCAGTA
AGCACCGGCAAGCACCTCTGACTGGTTTGTGAGCAAAGTAAGATTTTAGG
TTAGTTTCAAAATGGTAGTGGTGGCTATCGAAATCAAAACAAAAGCACGT
GCTTTCTGTTTTTTCTTTTTTGGAATCCAATCCAGAAATCCGCGTGACTG
AGAATTAAACTTAAACCAGAACAAAAGGACTAATGTTATGGCTCCTGCTA
GAAAGAAACGAAGGACTACTGATAACATTGTCAAGGATGAAAACTTGGAT
AAAGTTTCAAAAGACTGTAAGAAGGTAATGATATGATATGATATTTCTTC
TAATAAGTCTCAATAAAATGTCTATGAACACAAGTTAACCCTTCCGGGTT
TTCGTTATATATGTCTGTATATGTATGTGTATAATACGTGAGTATACACA
TTGCTCGATGCACTATTCATCCAGTGGTGAGTATTGAGAGGCTTCTGATT
GGTTCATGAGTCAGTGGAAACCCCTAAAACTGTAAAACAAGTAATCGAAT
TTTGAGCCATGAAATATAGTTGGTTTACAGAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAGGAACTTTGAGACTGAAATTCTCTGTA
AAAATAAGGAACTCCAGGCTCAGAGCAAAGTTAAGGTTCCTTATAAAAAA
AAAACGTGTATCTTTTTTACAAAAACAAATTGTAAGATGTTTTGATAAAT
TTCCAGAGGCTTTCATGAAATTTGGAAAATCTTTAAATGATGGGTGTTCC
AAAAAGGTAGGGTACCCCAATTGGGGCTCTATTCGTCTATTGATTGTTTA
TGAGTGTTAAATCTTTTAGAATTAAATGGAAAATTCGTGTAAAAATTGTT
TATCCATTTTAATCAGGGTTCAGACAGACCCTGGAAAACCTGGAAATATG
ATAAATTTTCAGAAAAATCAGGGAAACTCAGGGAAACCCAGGGAAAAAAA
ACTTTTTCCCAGTCTGCTCAGGGAAACTCAGGGAATTTTATTTTTTGAAG
AATGAATGGAAAAAACANTTTTCCCAGTCTGCTCAGGGAAACTCAGGGAA
TTTTATTTTTTGAAGAATGAATGGAAAAAAACAGATTTAAAAGTTTTTTT
AGTTTTAAGGCAATTACTTTTTTATTTTCTGGTTTACGGAATCGCCAACG
TTTTTTTTGCAGAAATAAAATAAAAATAAAATTGAAATTCATAGAAATTT
TATTTATTTTTGCACTTCCGATTCTGTTTAATCTGCCATGAAATGGATTT
TATTTAGAAAACTTCATTTTATAAGAGCAGGAAAGGAAGATAAAAGGGAA
AAAAAAAGAAATACAGTATTTCTAGGCTAGAAATTTTTTTTAATGTACGT
TGTCTGACAGGGGTAATGAAAATTTTCTGGAATGGCCCATTCAATTCCAT
TTGGGGATATCATTTTTTTTTCTTCTTAATATTTAATTTTGACCTTTGTA
AATTTAAATGATTGCAGTTTTATGCCTGGGAATTGTCAAGTTTTCAATGA
CTTCAGACAAAATCTACATACATCACAAAATAGTTGTTTTGGAAAACGCA
ATGGTCTATTGAATAACAAATTACTCCACATACATTACTTTCCCTCAGCC
AATAAAAATGTGATAAATTATCTTGTCTCTAGGTAACTGTTGTGGAGTAA
TTAGTTATTCAATAGGCCGTCGCGTTCTCCAAAACAACTATATCATATTG
TCAACTGCTCTAACTTGGGACAATTGGTCAAAACATGGGACTGTTGGATA
TCTGGTCTGTATTTTCACTTACAAATAGCGATTAAAGATCCAATTAAAAA
TCAGCATGTCTCAAACATTTTGTGTGTGTTGTCCACTGTTTCCTATTGTT
TTGACCAAATTAAACTCTTTTGCTGAAGCCACCTTTAAACAATATTATAA
AAAGCTGTCAAGTTTCATGCTTTTTGTATGACTGAAAAAAGTTTGTCATA
ATGTCCAAATTATAAAAAAAAAACATATTAAGACAGATTAAGAGGCCAAA
ATTTACTCAAAGTCATTCTTATTCCCTTTCTGTCCACTGCTCATTGCCCT
ACAACCAGTTTTATGACCATGATGGACAATTCAATCTGCCTAATAAGGGT
GCAGTATACAATGATGATGAGCAGGATGAAATTCACACATCTGCTCTCCC
AGCCAGATTTCTTGATGAAACAAATGGACAGGAATCTTTTGAATTTCTTC
ACTATATAAATACATATTGTCCAATATAGTGAATTCTTTAGTCCTTTTAT
GTCTCACCAGATCATGGTTTATCAATATGAAGTCTATGACATTTGTTTAC
CAGGAACCAGCGGCTGAAAATAATGAACAGAAANAATATTATAAATACAG
ATTGTCCAATATAGTGAATTCTTTAGTCCTTTTATGTCTCACCAGATCAT
GGTTTATCAATATGAAGTCTATGACATTTGTTTACCAGGAACCAGCGGCT
GAAAATAATGAACAGAAATTTTGGTTGATGAAGTCAGAGCCAGAGACAAG
AATTGAAAAAGGAGTTGATGTCAAGTTTGGCATTGAAGATCTTAAAAAGG
AGCCAAAACAAACTGCCTGCTGGGATGGTGTCAGAAATTATCAAGCACGT
AACTTTATGAGAGATCAAATGAAAGTTGGTAACAAAGCATTCTTCTATCA
CAGGTATTGGTTACTTTTTTGAAAATCCTAAGATTTTTTATTTTACAGGC
ACATAAGTTAAAACCATTTGGATCAAGGTTTTCTAAAGTTTTCATCTGTA
AATCCTCCAGAATCGTCTGTAAATACACAAATTTGGCAAGCGATAATGTA
ATATGACTCATGATGCTTCTTATTTTGTCGAGGGAGGTTTACATACAATG
TTTTAGCTCAAATTATTTAACTTTCTTAAAGAGTGGGTATTTAAAAGGGG
GATCTTATTTTGAACAATTTTAAGAATTGACGCCAACTGTCAAAAGTTCA
TGACAAAATAGTCACAGAAGATTTTCAAGACTGACAACATCATATGTTAT
TTAAAGATCCAAAAAAGGGCATCCAGGTACATTAACCAATAGTGTTATGA
TCATGTTAATATGTGTTTTTTTGATAATGTTAAAATTTCAGTAATTGTAA
AGTCCCGGGCATCGCTGGAATTATGACAATCGTAAAAGAAAGCTACCCTG
ATCATACACAGTTTGATTCTAAAGATGTACATTTTGATCCAAAATCACAA
AAAGAAAATCCAAAATGGTTTATGGTGGATGTCAAGTATGAGCGAATGAT
GAAAAGATATATTGGTCTCCCAGAACTTAAAAAACTTCATTCAGAACACA
AGTCTTCCCATGGTCCTTTGAAATCCGTCGCTTTGTTTACAAGAGCTCGC
CTTTCGGTGCAACCATTAACCAAAGAAGAATATGATTACATTTTGACTCT
GGAAGAAGTTGAAGAACCGTAATCTTTGACACCATTATAGACGCTAAACT
TTTATACATTTTCTGTTTATATTGTAAATATTTTGGGAAATAAAAATCCT
TTTTCTTTTTACTTTTGAAGTTGGGTCCAAATTGTCTATTGAAATCCTAA
AATCAATCAATTAATTAGTAAACGCAAGGTTGTGCAGACTTAATATCTTT
TTTGTTATTCCACCTAAAGGCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065431-exon-scaffold_439-1575043694:425958..426381 | TCONS_00065431-exon-scaffold_439-1575043694:425958..426381 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1575043694:422129..422343 | TCONS_00065431-exon-scaffold_439-1575043694:422129..422343 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1575043694:421158..421690 | TCONS_00065431-exon-scaffold_439-1575043694:421158..421690 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1510915933:425958..426381 | TCONS_00065431-exon-scaffold_439-1510915933:425958..426381 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1510915933:422129..422343 | TCONS_00065431-exon-scaffold_439-1510915933:422129..422343 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1510915933:421158..421690 | TCONS_00065431-exon-scaffold_439-1510915933:421158..421690 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1491911889:425958..426381 | TCONS_00065431-exon-scaffold_439-1491911889:425958..426381 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1491911889:422129..422343 | TCONS_00065431-exon-scaffold_439-1491911889:422129..422343 | Clytia hemisphaerica | exon |
| TCONS_00065431-exon-scaffold_439-1491911889:421158..421690 | TCONS_00065431-exon-scaffold_439-1491911889:421158..421690 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:421158..426381 - |
Blast
BLAST of TCONS_00065431 vs. Swiss-Prot (Human)
Match: THYN1 (Thymocyte nuclear protein 1 OS=Homo sapiens GN=THYN1 PE=1 SV=1) HSP 1 Score: 266.929 bits (681), Expect = 5.092e-87 Identity = 126/196 (64.29%), Postives = 155/196 (79.08%), Query Frame = 2
Query: 380 VKDENLDKVS--KDCKKEPAAENNEQKFWLMKSEPETRIEKGVDVKFGIEDLKKEPKQTACWDGVRNYQARNFMRDQMKVGNKAFFYHSNCKVPGIAGIMTIVKESYPDHTQFDSKDVHFDPKSQKENPKWFMVDVKYERMMKRYIGLPELKKLHSEHKSSHGPLKSVALFTRARLSVQPLTKEEYDYILTLEEVE 961
V+D N K S K+C K N WLMKSEPE+R+EKGVDVKF IEDLK +PKQT CWDGVRNYQARNF+R MK+G +AFFYHSNCK PGIAG+M IVKE+YPDHTQF+ + H+DP S+++NPKW MVDV++ RMMKR+I L ELK H HK++ GPLK++ LFTR RLS+QPLT+EE+D++L+LEE E
Sbjct: 35 VEDSNPQKTSATKNCLK------NLSSHWLMKSEPESRLEKGVDVKFSIEDLKAQPKQTTCWDGVRNYQARNFLR-AMKLGEEAFFYHSNCKEPGIAGLMKIVKEAYPDHTQFEKNNPHYDPSSKEDNPKWSMVDVQFVRMMKRFIPLAELKSYHQAHKATGGPLKNMVLFTRQRLSIQPLTQEEFDFVLSLEEKE 223
The following BLAST results are available for this feature:
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