TCONS_00065394 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00065394
Unique Name	TCONS_00065394
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	436

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_439:86729..94241-

transcript sequence

>TCONS_00065394 ID=TCONS_00065394|Name=TCONS_00065394|organism=Clytia hemisphaerica|type=transcript|length=436bp
TGCGAATTGAATTTTGAGGGTGGATGAGTTATGAAATTCTTAATGAGAAA
AACTATGTATAGgctgaaagttttcttttcattttggcGTTCCTTATAAT
ATatagtttttttcataaattcatCAGCAATTGATAAAATAACTGAGCCC
CTGGAGGAATAACTGACAATTTAAAATGGCCCAACAACGTCACATGCAAA
TATTTGCTTTGCCACCACCACCCCAACCACCACTACTACCACCGCAGCAC
CGACAACCTCCACCACGACAACCTCCACCACGACAACCTCCACCACGACC
ACTTCAACCACGACCACTTCAACCACGACAACCTCCACCACGACCACCTC
CACCACGACCACTTCAACCACGACAACCTCCACCACCACCACATCAACCA
CCACCAGTTTTTCGACCGATGATGGCATTACCGCCC

Run BLAST on NCBI

transcript from alignment at scaffold_439:86729..94241-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00065394 ID=TCONS_00065394|Name=TCONS_00065394|organism=Clytia hemisphaerica|type=transcript|length=7513bp|location=Sequence derived from alignment at scaffold_439:86729..94241- (Clytia hemisphaerica)
TGCGAATTGAATTTTGAGGGTGGATGAGTTATGAAATTCTTAATGAGAAA
AACTATGTATAGGCTGAAAGTTTTCTTTTCATTTTGGCGTTCCTTATAAT
ATATAGTTTTTTTCATAAATTCATCAGCAATTGATAAAATAACTGAGCCC
CTGGAGGAATAACTGACAATTTGTAAGTATTTTGTATTTCCTCCGAATTT
TACTAATCGCCAATTTTTTTTAAATTCTTACAATCATAAATAGCTTTCAA
AAGGCGCTAACTTTAATAGAAGTAAATAATAAACAGCTACTATTAGGCAC
AGAGCCGCATTGTGGGTCCTAGAATCAGAAAAAAACCCTGCAGTCGATTA
AAAAAGTGTGTTATCCTTTTTAGGGACAATGTGTGAATGATTGATAGATT
ATGAGCGAATGGAGTCACAACCTATAACCCATACTTCTTCTTTCAGTAAT
ACGTCTCAATATATAGTGTGTCCCAAAAAGTGGACACTTTTAAATAAAGT
AAAATCGTCATGGTTTTTTTGCGAAATTTTATGATTTGTATACTTAATCT
TTCTCCAAAACGTATTCTACTTAATATCAAAATTTGTCCGCTTTTTTCTT
TTTTTTTTTTTGGGGGGGGGGCTCACTATAGGATAAGGGCCAGGGCAAAC
CAGTCCAACATTTCATCCAACATGATTTTCCAATGTTGGATGAAATGTTT
GATGGAAAAACTTGCGTTGGATGAAGCAAAAATCAAGGCCGGGGCAAACC
GATCCAACTTTCATCCGACATGACTTTGAAAAAAATGAAAATTCGAAAAN
GCGATCAAACTTCATCCAACACCGTCCAACACGATTTTTTTCTTCTTTTT
TTGAATTTTCATCTTTTTCCAAAAATTTGAATTGACGCAAACTGGTCCAA
CATTTCATCCAACATCAGAAAAAGGCATGTTGGATGAAATGTTGGATCGG
TTTGCCCTGGCCTTAAGGAAGCCGTGGCTGGAATGAGTACATCTGAATTT
CAGTGTCGTAAGAACGAATTATAATCAATAGGCTGTCTCTTTCGTACTAT
TTTCAACGGAGCTAAAATTACCCATTGCATTTAGCTATCGACGTTATCCC
TTTTTTGTAAGATTCCGAAAAAATCCAACTTTAGAAGCGCCTCAGAATTT
AATTTCTAATCCAGTTGTTCATCCTCAATTCACAGATAACTGAAAAAATC
GCATTTTCTCTCAATATTTTCACAACATTTAAGATTTAACGATTTAAAGT
CAATCCAAAGAAAAATCCTAATACTCTTTTGTTATTTCAATCTATTTGGA
ACATAGGACCGAAATTATTTTCTAAAATTCCAAAGCTGAAAAACTCAAAT
TTTCACTATTAGAAAAACACTAACACGATTTGAGTTTTGCATAGTGTTCG
ATTATTACACCCCTCTTTCACAGACCCGCTGGGACCCCAGCCTCACTTGA
AAATTTGGCAAAAATTTCGTCCCCGGTGGGAAAATATCCTGGAATTTCAG
CCCCATTGGGAATTTTACTTTGATTTCATTCAATGAAATTCAATGTTTAA
AAATGGCACTCCAAAACCATCCCCACTGGATTTTTTGACCTTAGAACAAT
AGAATTTCTATCCCCATTAGAATTTCAATAGAAATGTTTATCCCCACTGA
GGAAGAAAGTTCCACCAGGGGGCTGTGAAACAGGAGTGTATTATTGATAG
ATGGAGAATTTCAGTAGATCGGACCTGAGAAAAATACTGGTCCTAACAGA
GAATAAGTTACCCTTACAAGGACAAGGTGAAAAGTGACTCTTTCCGATAT
TTTCCGATTATTCATCGATTGGATATAGTTATCAATTGTACCGAGTGGGA
GAGTCTAAAAATGACGCATCGCCATAGAACAGATATATAACTTCGCGCAC
TTATAGATTGACACCCCCTGCCATAAATTCCTCTGTGAAACACTTAATAA
AGATAATCTGTCTTACAACACAACTTGATATCAAATATCAACCTCCTTAT
AAAAAACCATGGTCTGGAAGCCTTTTGTTTATTTCCGNTCCAACACGATT
TTTTTCTTCTTTTTTTGAATTTTCATCTTTTTCCAAAAATTTGAATTGAC
GCAAACTGGTCCAACATTTCATCCAACATTAGAAAAAAGGCATGTTGGAT
GAAATGTTGGATCGGTTTGCCCTGGCCTTAAGGAAGCCGTGGCTGGAATG
AGTACATCTGAATTTCAGTGTCGTAAGAACTAATTATAATCAATAGGCTG
TCTCTTTCGTACTATTTTCAACGGAGCTAAAATTACCCATTGCATTTAGC
TATCGACGTTATCCCTTTTTTTGTAAGATTTCGAAAAAATCTAACTTTAG
AAGCGCCTCAGAATTTAATTTCTAATCCAGTTGTTCATCCTCAATTCACA
GATAACTGAAAAAATCGCATTTAAATTCATTTTCTCTCAATATTTTCACA
ACATTTAAGATTTAACGATTTAAAGTCAATCCAAAGAAAAATCCTAATAC
TCTTTTGTTATTTCAATCTATTTGGAACATAGGACCGAAATTATTTTCTA
AAATTCCAAAGCTGAAAAACTCAAATTTTCACTATTAGAAAAACACTAAC
ACGACTCTGAGTTTTGCATAGTGTTCGATTATTACACCCCTCTTTCACAG
ACCCGCTGGGACCCCAGCCTCACTTGAAACTTTGGCAAAAATTTCGTCCC
CGGTGGGAAAATATCCTGGAATTTCAGCCCCATTGGGAATTTTACTTTGA
TTTCATTCCCTTTCGAAATTCAATGTTTAAAAATGGCACTCCAAAACCAT
CCCCACTGGATTTTTTGACCTTAGAACAATAGAATTTCTATCCCCATTAG
AATTTCAATAGAAATGTTTATCCCCACTGAGGAAGAAAGTTCCACCAGGG
GGGCTGTGAAACAGGAGTGTATTATTGATAGATGGAGAATGTCAGTAGAT
ACAAGTGTCCTTGGTAGATCGGACCTGAGAAAAATACTGGTCCTAACAGA
GAATAAGTTACCCTTACAAGGACAAGGTGAAAAGTGACTCTTTCCGATAT
TTTCCGATTATTCATCGATTGGATATAGTTATCAATTGTACCGAGTGGGA
GAGTCTAAAAATGACGCATCACCATAGAACAGATATATAACTTCGCGCAC
TTATAGATTGACACCCCCTGCCATAAATTCCTCTGTGAAACACTTGATAA
AGATAATCTGTCTTACAACACAACTTGATATCAAATATCAACCTCCTTAT
AAAAAACCATGGTCTGGAAGCCTTTTGTTTATTTCCGTTATTTCTTACTT
GAACTTGCGTTGAGAAATTAGTTTGTTTTGCTCACTTTTTGATCATGTGA
TTAAATCTTTAACCAATCCCAAGAGAAGTACTTGGTAACGTGATCAAAAA
CCGAGCAAATCGATTTTCGTCCTTTGATAATAACAAAGGAAAAAGCTAAC
AAAAAGTTAAAACAATAAGCTTCCAGACCAGTGTTTTTTATACGGACTAT
GTATCAACAAATATTTCTACCTGTAAAAATCATACTTGTCTGTATTTATT
TTTGTTGTGTGTAGTGATGTTCAAGAGCAACTCTTTAATTGTAAGATTCC
TATCACTTTATTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTCAAGTTTCTGAAAACCAATCTCTTTTG
AAAATAGTTCCATTCATGTATGGAATATGCTGTGAAAATTTTAGAAAAAC
AGCTTAACTGAAACTGAAAATATTAAGCTGTGAAGTTAGTTTTCTCCGAC
ATTTTGCAAAAAATTGACAGAATTTGCCGTTTTTGCTAATTCAGCGAAAA
ATTTTATATGTAATATTAATTTTTTGTTATGAACTATTATTTCAAGCTGA
TAGAAATGGAATTCCAAGATTTTTTGCTCTTTCTCATATTTAGAATTTTC
GGTTTTTTCAAAATACTGGTTGACCTTTAAGATGCTATATCTTTTACCCG
TCCTCTAAAATCACAGATGTATCTGCAGTTTCTGAAAGGTATTAGGTGTA
GAAAGTTTCTTATACCCCATTTTCATAACTTATTTTCACTATCCAAGGAG
CTAGAGTGGGTTATATGCAATTTTTGTCTAATTTTGGTGTTGAAATATGT
CCTTCAGAGGCAAATATGTTATTTTGAAGCTGTCTCAAACCATCAAAAAC
ATGCTCATTTTTAAGTATGACCAGCATTCTTTCAAAATCAAAAAAAATCG
TTTAATTCTGATAAATCTACAGGTCAAAATCCTCATTTTAATGACGACCT
CCGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCATATACTGTATCCAGTTT
GATTCCATGCCTGGCAGCAAAAGTGTTTTCTTTCATCAAAATATATAAGA
CCATATGGTCATATTTTTTCTTGTTTTCATGATTGAATCTTTGGTCAAAC
ATTAAGGAATATTCATTTATTGTTATTATACCTGTTTTTTTTTTATAGTT
CTTGAATTTTGGCGGTAAAATCGACCTAGAATCCTTTTGTATGAAAATCA
CGCAACTAATGTAGGAAATAATGGCTTCAAATCTTGCATAGTAGATTACC
AAATATCCCTGTAACAAAAGATGAACGGCCCTTTTTCATTTTATGTTCTA
GAAAANTTTTTAAGTATGACCAGCATTCTTTCAAAATCAAAAAAAATCGT
TTAATTCTGATAAATCTACAGGTCAAAATCCTCATTTTAATGACGACTTC
CGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCATATACTGTATCTAGTTTG
ATTCCATACCAGGCAGCAAAAGTGTTTTCTTTCATCAAAATATATAAGAC
CATATGGTCATATTTTTTCTTGTTTTCATGATTGAATCTTTGGTCAAACA
TTAAGGAATATTCATTTATTGTTATTATACCTGTTTTTTTTTATAGTTCT
TGAATTTTGGCGGTAAAATCGACCTAGAATCCTTTTGTATGAAAATCACG
CAACTAATGTAAGAAATAATGGCTTCAAATCTTGCATAGTAGATTACCAA
ATATCCCTGTAACAAAAGATGAACGGCCCTTTTTCATTTTATGTTCTAGA
AAATGGCCCAACAACGTCACATGCAAATATTTGCTTTGCCACCACCACCC
CAACCACCACTACTACCACCGCAGCACCGACAACCTCCACCACGACAACC
TCCACCACGACAACCTCCACCACGACCACTTCAACCACGACCACTTCAAC
CACGACAACCTCCACCACGACCACCTCCACCACGACCACTTCAACCACGA
CAACCTCCACCACCACCACATCAACCACCACCAGTTTTTCGACCGATGAT
GGCATTACCGCCC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_040990	XLOC_040990	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00065394-exon-scaffold_439-1575043694:94070..94241	TCONS_00065394-exon-scaffold_439-1575043694:94070..94241	Clytia hemisphaerica	exon
TCONS_00065394-exon-scaffold_439-1575043694:86729..86992	TCONS_00065394-exon-scaffold_439-1575043694:86729..86992	Clytia hemisphaerica	exon
TCONS_00065394-exon-scaffold_439-1510915933:94070..94241	TCONS_00065394-exon-scaffold_439-1510915933:94070..94241	Clytia hemisphaerica	exon
TCONS_00065394-exon-scaffold_439-1510915933:86729..86992	TCONS_00065394-exon-scaffold_439-1510915933:86729..86992	Clytia hemisphaerica	exon
TCONS_00065394-exon-scaffold_439-1491911889:94070..94241	TCONS_00065394-exon-scaffold_439-1491911889:94070..94241	Clytia hemisphaerica	exon
TCONS_00065394-exon-scaffold_439-1491911889:86729..86992	TCONS_00065394-exon-scaffold_439-1491911889:86729..86992	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_439	supercontig	scaffold_439:86729..94241 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.3812	24.503	5.30877	5.54006	1.68612	0.499649	0.200935	0.752452	0	0	0	0	0	0	0	0.0952385	0	0	0	0	0.15111	0	14.1567	13.4828	0	0	0	0	10.9286	11.3112

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00065394 vs. Swiss-Prot (Human)

BLAST of TCONS_00065394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00065394 (transcript) - C. hemisphaerica