TCONS_00065391 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065391
Unique NameTCONS_00065391
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length931

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065391 ID=TCONS_00065391|Name=TCONS_00065391|organism=Clytia hemisphaerica|type=transcript|length=931bp
aaaaaaaatttttgatcacTCATCAtacccaaaCATTTGCACGACGTTCG
AGTGCTACAAAACATTGTTCACCAGCTTCAAACGTCGGGCCGGGAAGaca
aaaatgaaagaagaagGCTTTTGAGAGAGCTTCAGGACGAGAGAACGACA
AGGAGAAATAACGAAGTTGAGGTGCgtgtataatttttattacactcctg
tctcagtgccccggtagaacttttttccCCAGTggagatgaaaatttcta
tcaaaatgccaatggggatagaaaatctattgtttccagctcaaaaatta
CAGTGGGAGATGGTATTGGAGtgtaattttttacattcaattttcaatgg
ggataaaatcatagagcaatttcgcagtggggttttcaaattataggata
ttttttccaccggggacgatattttggcctatttttccaccggggtgagg
gtccaccgggtctgtgacacaggggtgttttattaAATGTTACTGACCAA
AGTAATGATGGAAGGGTTTGAATCATAactgtatttttgtctcgatttTG
AGACAAATTTAGTATTTATAATTGTCTtgtaatttcatttcatttggtGA
TTTCAGCATGAAATGACGATCGTGGATATGAGGAGAGAATTAGAGTACCA
GCAAGACACCAGGCCCCAAGATTTTCAATGTGCTCCTGTCTGCCCACATT
GTGGCAGAAGGCGGAATTATTATATAAACGGTAAGTCTGAGATTATTAAA
GTTCTTTCTTTGCGGGTACTGTATACTAATTTTAGAAAGTGTTGAAAACA
GATctgcttttttataagcacaatttTATGAATGCTTAATTTTGCCTGGA
ACCTATTAAAGTCCATTCACTTTAAGTGTTCACTttacgtttttataaga
attatatttttcatttcgtcagatatttttc
Run BLAST on NCBI

transcript from alignment at scaffold_439:81592..86483-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065391 ID=TCONS_00065391|Name=TCONS_00065391|organism=Clytia hemisphaerica|type=transcript|length=4892bp|location=Sequence derived from alignment at scaffold_439:81592..86483- (Clytia hemisphaerica)
AAAAAAAATTTTTGATCACTCATCATACCCAAAGTGAGCAAAAACCGAAA
ATTTCTTTTGTTCTTATAAATAGCTATTGTATTCTATAACAAAGGCTTTA
GAAAAAAGTTGCCTTATCAGCAATCTTATTGGTTAAAGAAAGAGTACAAT
ATATCTTGTATCTTACATGTACAAAATATAAATTGACGAAAAGATGTTGT
TGCTTTGTAACGGTAGAAGCAATCTAACGTCACTTTGCTACAAAAGTGTC
CTGCGCTTTTTATTTATTATGTGCTTTTTTTATCAGACATTGAGAAATAT
TGCACTCGCTCCGGATTTTCCATGTAAAAATCCTAAAGGCTCGAAAAATA
TTGTACGGAGAAATCTCAGAACTCATAAAATATTTCTCATAACATTTTAA
GAACATTTTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTC
GAAAATTTTTGACGTTCGTATAAAAAAAACGTGTATTGTACTCGCAACTG
TCCGATAACTATTACGTATTAGAAAAGTGTCAATTTTTGTGACACCTTAC
TGTCAGAAATGTCATCATGCTTAAGGTGTGAAAATTTTTAGGTGTCAAAA
TTTTTAGGTGTCAAAATTTTTAGGTGTCAAATTCTTTTTATTTTGAAGCT
AATGAAAGTTAGGAATTTACAGAAAATCTCATGTCAAAAGCTCTATTATT
TCAGGAGCTATTACCATTAATCTGACCTCAGAACAGAAACAGCCCCCCCC
CCTAGGACGAATAGACTTGAAGCATAACTACGATGGCCTATTTAGATAAA
TGATTTTCTTGAAAGTGAATAAAACAAAAACATTTATCAAATTATCTGTC
AGTAAAATCGCAAATGCGAATAACTTTTGATACAATCTGATTGTGCTTTT
GTGGTCGAACATAATCGTGAATATAAATCTACAATTAAAAAAACATTCGA
AGATGATGAATGAAGAAGAACCAAATTGAACCTAGTAAACGGAACGGATT
CAGCTTTTTCAGTCCGGTTTGTGGGAAAAGAGTAGAATTTAAACTAGCAT
TCAAAATGCTTTCTAAAGTATTAAAGATCGCTAAAAACCTACTTTGGTTT
GACTTTAGGGATTGAAACATTTTGAGGCTCAGATTGTAGATAATTAATTT
AGTGTCCATGAAAATTGAAATATAATACACCTTTTCCACTGTAGCCGCCA
ATTACCGCACGGGCATTTATTTTTCCGTCCCAGTCCTTTTGTCGCTCCTA
TAGACAATAGAAAAATGTGTCAAAAAAGGATTGGATCGATTTTAGGAGGA
ATAATTAAAAAATTAAGCGGCAGGCGCCTTACCGCGCGACTACGGTCGAA
AAGGTGTATTTGATTTCAATTTCCATCAATGTCAAAATATGTTGGGATTT
TGGAAGGGTCGTACCCCCGTGACCACTTTTTGATTTTACTGATGGACGTG
ATAGTCCTTTCATGAGTGCTCTCAGAATCATAAAAAAACGAGCTAGGTAC
AAGTTAGAATTTCTTGGTATTTTTCTGTTTTTCAGAATTTGAAATTCAGG
CGATTTCAGCATTTCCTCTTTTATTCATTGGATCTTCGACTTGGGGGGGG
GGGGGGGGGGGGGGGGGGGGTTTCAGGCTATATCCTTAGCCTTATTGGAG
TATTTTTGAGCTTTTCATTTTTGAATTCACTTATTATGATTTGTGTCATT
TTGATTGTTAAACTTTACCAATACAATGAAATTGCTTGTACATCCTTTGC
CCTGAGATTTTAAAATAACATATTTCTTTATATCATAGCATTTGCACGAC
GTTCGAGTGCTACAAAACATTGTTCACCAGCTTCAAACGTCGGGCCGGGT
AAGTTTCCTATTCCTATTTTAATTTCATTCTTTTTAATCATAATCATTTT
CTTATATTATTTTCCCGATGAAGAAAAAGTAAAGTTCTACGGGACTTTTC
TGAAATTGATAAATAAATTTATCCAACTACGTTTTCCCAGCTGAACAAAA
ATTGACAAATAAAATTTCCTCAGAACGAACCAGCTTTGATCTTGATTTAG
AATTTCCGGATATGATTTTTTGATCTACATTTTCAGCTGGAGTACTTATG
CCTTCAGGACAGTGACTCTGTTTATAATGAATTTAATTAATCTCCAAATA
TATTCGATTGATAGGAAGACAAAAATGAAAGAAGAAGGCTTTTGAGAGAG
CTTCAGGTATACTAATTTTGACATATTATGCTATTTGCTCTACTGAAAGA
GGTGTGTGAGTTAACAGTGTCATATTTACTGCCCGGGGGTGTACTAGGGC
AAAATAGGTTACGGGGATGCGCCACTGGTCAGCGTACCTTTTTAACCTCC
ACGAGTCCCAGGTAGGGTCACAAAAACACCAAAATAGAAAAATCAGTCAC
TTGTAGTCACTTTTTTTGGAAAATTTGGGGAAAAAGTAGAAAATTTAAGA
AAATTTTGGAATTTCAGTCCCATTTAGGGTCACTTTTTTCGCAAATTTCG
GCAAAATTAAAACGAGTCCCATGTAGAGTCCATTTTTCAAACCTCAGCGG
AGCACCCCCGTCGGTCAGCAAGGGTAGTACTCCCCAGAATCTTTTGGGGA
AAAGAATGTTTCTCCGATAATCTTTTTGCATAGAAGGATAAATTTCACCA
TTCTGAAAAACTACGTCTCTTGCACACCGGATGTATTTATTTGACTCCCC
TATCAAGTTAGTGTGAAGTTAACCAAAAATTCTGGCGTCATAACGTTATG
ATGAAATGTCAAAATTATAAACTTTTTGTTGGAAATGATTATCTTTTCAT
CTGTGAAACATTCTTTACCTTTTGACCCAAAAGACATTACACGTAAAAGG
ATTGCTTTCTCGAGATTTCTAAGCCAATCAAAATACGAGCACAAAAACTG
TAAGGTCTCCTCTGGCCTCTGGCGACCAAACCGTTTACTGCAGCCATCGC
CATCATAAAAATCAAAATAGATTGGGCTCAGCAAAACGGGTTTTTGTCGC
CAGGTTTCCAGGCTAGTGTCAAGTTTATCGTTTTCTTAGTTCATTTTTCC
ATGTCTAAATCTGAGAAAATATAAATTGTCTACATACTTTTGAGACACTA
TTTATTGTTTTTTCACGCGGTGGTTTCAGGACGAGAGAACGACAAGGAGA
AATAACGAAGTTGAGGTGCGTGTATAATTTTTATTACACTCCTGTCTCAG
TGCCCCGGTAGAACTTTTTTCCCCAGTGGAGATGAAAATTTCTATCAAAA
TGCCAATGGGGATAGAAAATCTATTGTTTCCAGCTCAAAAATTACAGTGG
GAGATGGTATTGGAGTGTAATTTTTTACATTCAATTTTCAATGGGGATAA
AATCATAGAGCAATTTCGCAGTGGGGTTTTCAAATTATAGGATATTTTTT
CCACCGGGGACGATATTTTGGCCTATTTTTCCACCGGGGTGAGGGTCCAC
CGGGTCTGTGACACAGGGGTGTTTTATTAAATGTTACTGACCAAAGTAAT
GATGGAAGGGTTTGAATCATAACTGTATTTTTGTCTCGATTTTGAGACAA
ATTTAGTATTTATAATTGTCTTGTAATTTCATTTCATTTGGTGATTTCAG
CATGAAATGACGATCGTGGATATGAGGAGAGAATTAGAGGTGTGTGTTTG
ATTTTTATCAAATGTTATTGAACATCTTTTGTGTGACGCGACCAAGCATG
GTACATTTCAAAGAAAAAGTAAAGTGTTTGAGGACGGTGATTAGGAACAA
CCTGCTAAATCAAGGACGGTAAAACGTACTGATTTACCGTCGTCTTCAGA
TGGTCAGGATCTAGACAACGGTCTCCTTGGATAAAAACCCAAATATTTAA
ACTCTCTAATATGTCTTAGACTACGGTAATGCTTTAATATCCCACCAATA
CTTGAATTTCTTTATCTGATTTTTAGTACCAGCAAGACACCAGGCCCCAA
GATGTAAGCATAACCTTTCAACTTCATAACTGAAAATTGGAAATTGTTTA
TCTAGAATCAACAATCACGGCAATTGTTGAAACTGAAATGACAACCCATT
CTCACAGACCCGGTGGGATTTTTTCAGCCAGTGGAGGGGTGAAAATAACG
GACCGAAACACGATATGTTGAAATGAAAAATTGAGAGAAGAAAGAGACAT
GTCATCAAAGATATTTATCCTTCAAGCAATGTTTTCTTACTTCATTTTAC
AACACAATTTTGCTTACTGTGTTTCTAGTTTCTATTATTGTAATTCTAGT
AGGGTTTTGATTCTGATGGAGCCCGATTTTTGAAAAGGGCCATGGGTTAA
TAGGGAAATCAAGCTAAAATATNAGAGCCCGATTTTTGAAAAAATAGTTT
TTTGGGCAAATTTTGGCCAAAAAGGGCCATGGGTTAATAGGGAAATCAAG
CTAAAATATTTATTCACGATTGCATTTTCACACTTTTATTTACATTCACT
CTAACCACAGGGGGGGGGGTTCATTTCAAAATTTTCGTCGTACGCTTAGT
ATTTCCTTTCCAACGAGCTATCACTTACTTGTAGTTACATATTTCTCCTT
CAAGAGCAATGTATTTAAATATGCGGAATTCAAATTTATTTGGAATAGAC
TAGATATATTAGAAAGATGATATTCTATTTTAGTTTCAATGTGCTCCTGT
CTGCCCACATTGTGGCAGAAGGCGGAATTATTATATAAACGGTAAGTCTG
AGATTATTAAAGTTCTTTCTTTGCGGGTACTGTATACTAATTTTAGAAAG
TGTTGAAAACAGATCTGCTTTTTTATAAGCACAATTTTATGAATGCTTAA
TTTTGCCTGGAACCTATTAAAGTCCATTCACTTTAAGTGTTCACTTTACG
TTTTTATAAGAATTATATTTTTCATTTCGTCAGATATTTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040989XLOC_040989Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065391-exon-scaffold_439-1575043694:86451..86483TCONS_00065391-exon-scaffold_439-1575043694:86451..86483Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1575043694:84636..84695TCONS_00065391-exon-scaffold_439-1575043694:84636..84695Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1575043694:84278..84319TCONS_00065391-exon-scaffold_439-1575043694:84278..84319Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1575043694:82845..83354TCONS_00065391-exon-scaffold_439-1575043694:82845..83354Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1575043694:82531..82557TCONS_00065391-exon-scaffold_439-1575043694:82531..82557Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1575043694:81592..81850TCONS_00065391-exon-scaffold_439-1575043694:81592..81850Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1510915933:86451..86483TCONS_00065391-exon-scaffold_439-1510915933:86451..86483Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1510915933:84636..84695TCONS_00065391-exon-scaffold_439-1510915933:84636..84695Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1510915933:84278..84319TCONS_00065391-exon-scaffold_439-1510915933:84278..84319Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1510915933:82845..83354TCONS_00065391-exon-scaffold_439-1510915933:82845..83354Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1510915933:82531..82557TCONS_00065391-exon-scaffold_439-1510915933:82531..82557Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1510915933:81592..81850TCONS_00065391-exon-scaffold_439-1510915933:81592..81850Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1491911889:86451..86483TCONS_00065391-exon-scaffold_439-1491911889:86451..86483Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1491911889:84636..84695TCONS_00065391-exon-scaffold_439-1491911889:84636..84695Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1491911889:84278..84319TCONS_00065391-exon-scaffold_439-1491911889:84278..84319Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1491911889:82845..83354TCONS_00065391-exon-scaffold_439-1491911889:82845..83354Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1491911889:82531..82557TCONS_00065391-exon-scaffold_439-1491911889:82531..82557Clytia hemisphaericaexon
TCONS_00065391-exon-scaffold_439-1491911889:81592..81850TCONS_00065391-exon-scaffold_439-1491911889:81592..81850Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:81592..86483 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.27419	5.89838	2.29535	1.57972	0.202164	0	0.12856	0.242822	0.124425	0.1557	0.251477	0.198197	0.0673332	0.0350134	0.056099	0.0914979	0.0741272	0.0761254	0.270929	0.223036	0.193438	0.282199	3.69903	2.42454	0	0.290339	0.348858	0.22526	2.99655	2.81935
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065391 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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