TCONS_00065363 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065363
Unique NameTCONS_00065363
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1781

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065363 ID=TCONS_00065363|Name=TCONS_00065363|organism=Clytia hemisphaerica|type=transcript|length=1781bp
AATTGTCAAAATGGTACCACTAGTTACGACTgtgaaaaatcataaacaat
tTTCATATGAATTTTTTGGTCCtgtgatttgtttttatttggcTTTGGTT
TATTTACATTTATTGTGGAACTCGAAATGCTATTAGAATGAGTAATGTAG
ATAATGATCATTCTGGAAGCAATTACACTTACtacaatcaaaacattgaa
ttacCACGCGTAAGTAGTATTCCTTCATCACCTCGGGAAGAAAATCATCG
TACAGAATTAGTCAAGAATAATACATTTTTTACCCAAGAAGATGGAGCTA
TTCAACAAAATGATTCCTTTTCTGGAGTCTCAAATGTTATCGAATCTCTT
AATAATTATGTTAGACCCATAAATGATGATAAAAACGACGAggatgatga
taaaacagttGATGATACAGATGACAAACCATTATTTGTTCCATGCCCTC
CATCAAAGCCAAAACCAACAAGTGGACGAATAGTTAGGGCACAAGTTCAT
CCAAAGCCTAGACATCAGCCAAGAGAAGACCAATCTTTTGCCATTAAGGA
AGAAGATTTATCTTTTAACAATCGTTTACCAAGTCTTTCaaatgatgatt
ttgatttAAACAAGCCATCTTCAAAAAACTtgcaagaaaaaaatcaaagt
agCACACCACGTATCAAGTCCGACAGTTCAATAAACAAATCACATGACAA
GAAGAACAATATATCAAGAGATCAGAGGCTCATTAATCAGTATACAGAAT
TACTAAATGAAAGGTTCAGAGATTTTTCTTCGGAATCTGAGACCGAAGGA
AAAGATTTTACAGTATCAGTAAGCAGTCTTAGCAGTGATGAAGATACTTA
TGATAATActgatgatgaagatgaaaatcaGCTTGAAGGGCAAACACTTA
CGCaagaaaaatttgagccatTATACAGTTTAcccattaaaaaatcaaaa
aaaattgacaagaaCAGCTTTAACAGTATACTTATTTCTAATTCAAATAT
GGGTGGAAGTCTACACCGGACAGGATCTTTGCCAGATCTAAGGTCAATTG
CTGATATGAGCTTGAAAAAAGTAAGTCATGTAAGCAAAAATGAGTCCGAA
GCTGAGAGTGAACCAGGAGCAAAAATAGGATATAAGTTCAAACCACTACC
ACCAATTCCTGGAACATCGTCAAATATAAACAATACTGGGTTGTATGAAA
CAATTGATGGGttatcaaaactttcaaaaaatgcagttaCCAAAACTGAG
AGTATTGAGTCAAATAAACGGAAAACATTTAAAGAGATTGCCACGATATT
AACTTTAGTGCCAAGGTTGACAACAAATTCTGTTAGAAGCCGAAAGAATG
ATCATAGACTAGCTGACATTAGCAATTATCTTCCTGATAAAAAGTTGAAG
ATATTTGTTGGTACCTGGAATATGAAAGGGACTAAGTTTTTACCTTCATC
ACTGGACGATTTTTTGCTACCACCTGAAAGTATTTATTTACAAGATGTCT
ATGTCATTGGAACTCAAGAAGGAACACCATTCAGgagaGAGTGGCAAGTT
AGGTTGCAAGAGACCTTTGGACCTTCGCATGTTTTGATGCAATCAagtaa
ttttggtgttttgcaGCTATCCATTTTCGTAAGAAGGGAGTTGGTTTGGT
TTTGCTCTAGCGTTGAACAAGATACAATAGCAACGCGTGTTGGACATAAA
ATCAAAACTAAGGGAGCATTAGCAATGTCTTTCAGTATCTTTGGAACATC
TTTGTGCTTTATCACATCTCATTTCACGTGT
Run BLAST on NCBI

transcript from alignment at scaffold_439:323550..326640+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065363 ID=TCONS_00065363|Name=TCONS_00065363|organism=Clytia hemisphaerica|type=transcript|length=3091bp|location=Sequence derived from alignment at scaffold_439:323550..326640+ (Clytia hemisphaerica)
AATTGTCAAAATGGTACCACTAGTTACGACTgtgaaaaatcataaacaat
tTTCATATGAATTTTTTGGTCCtgtgatttgtttttatttggcTTTGGTT
TATTTACATTTATTGTGGAACTCGAAATGCTATTAGAATGAGTAATGTAG
ATAATGATCATTCTGGAAGCAATTACACTTACtacaatcaaaacattgaa
ttacCACGCGTAAGTAGTATTCCTTCATCACCTCGGGAAGAAAATCATCG
TACAGAATTAGTCAAGAATAATACATTTTTTACCCAAGAAGATGGAGCTA
TTCAACAAAATGATTCCTTTTCTGGAGTCTCAAATGTTATCGAATCTCTT
AATAATTATGTTAGACCCATAAATGATGATAAAAACGACGAggatgatga
taaaacagttGATGATACAGATGACAAACCATTATTTGTTCCATGCCCTC
CATCAAAGCCAAAACCAACAAGTGGACGAATAGTTAGGGCACAAGTTCAT
CCAAAGCCTAGACATCAGCCAAGAGAAGACCAATCTTTTGCCATTAAGGA
AGAAGATTTATCTTTTAACAATCGTTTACCAAGTCTTTCaaatgatgatt
ttgatttAAACAAGCCATCTTCAAAAAACTtgcaagaaaaaaatcaaagt
agCACACCACGTATCAAGTCCGACAGTTCAATAAACAAATCACATGACAA
GAAGAACAATATATCAAGAGATCAGAGGCTCATTAATCAGTATACAGAAT
TACTAAATGAAAGGTTCAGAGATTTTTCTTCGGAATCTGAGACCGAAGGA
AAAGATTTTACAGTATCAGTAAGCAGTCTTAGCAGTGATGAAGATACTTA
TGATAATActgatgatgaagatgaaaatcaGCTTGAAGGGCAAACACTTA
CGCaagaaaaatttgagccatTATACAGTTTAcccattaaaaaatcaaaa
aaaattgacaagaaCAGCTTTAACAGTATACTTATTTCTAATTCAAATAT
GGGTGGAAGTCTACACCGGACAGGATCTTTGCCAGATCTAAGGTCAATTG
CTGATATGAGCTTGAAAAAAGTAAGTCATGTAAGCAAAAATGAGTCCGAA
GCTGAGAGTGAACCAGGAGCAAAAATAGGATATAAGTTCAAACCACTACC
ACCAATTCCTGGAACATCGTCAAATATAAACAATACTGGGTTGTATGAAA
CAATTGATGGGttatcaaaactttcaaaaaatgcagttaCCAAAACTGAG
AGTATTGAGTCAAATAAACGGAAAACATTTAAAGAGATTGCCACGATATT
AACTTTAGTGCCAAGGTTGACAACAAATTCTGTTAGAAGCCGAAAGAATG
ATCATAGACTAGCTGACATTAGCAATTATCTTCCTGATAAAAAGTTGAAG
ATATTTGTTGGTACCTGGAATATGAAAGGGACTAAGGTATGGATATGATA
CAAAAGATGCTTTTTTTGGTCTCTTCTGTTTACAGTTCCCTTAATTGACA
AATTTTGCTATTATAATGATATTATCTTGGCTATTATTTTTAGGTAGTGT
GATTTTGTGGTATATTCTCTCCAATGACATAAATTTTAATATTCTCTGTC
ATAAATTTTGCGCGTGTTACACCAAGCTCATAacagtttctttttttata
ttatatctCATGTTTGGAAAATAAGCTTTGATATTAATCTCCATTATTTA
CTCTGTAATTTGTACAAGTTGATTATGAGATTATcaaatattgttttttg
tttctaGTTTTTACCTTCATCACTGGACGATTTTTTGCTACCACCTGAAA
GTATTTATTTACAAGATGTCTATGTCATTGGAACTCAAGAAGGAACACCA
TTCAGGTAAGGTGGTTTCATCAGAAATTAACCTAAAATGAAAGACATTAT
AAGTATGATCCTCATGGCaatcaggccatttttcatacCTTTTTAGCGTC
AGGTTATCCGGAGTTGACCTTCTTGAATTATGAAAATAagggtaaaaaca
gcctttcttttgaaaaaaaacatcagaaaaagtTCCCTTTTTGGTCTCTA
TCTgacgctgccctgcctttctagaATTCGGCCTGGCAATACTCTTgtat
tttttaggaaatttttttcaactgttttataaaaaaagctatTGTACCAG
CTTTAGTGCAACAAAGAGTAGTTgtgaatcttctttttttttaattttag
gagaGAGTGGCAAGTTAGGTTGCAAGAGACCTTTGGACCTTCGCATGTTT
TGATGCAATCAagtaattttggtgttttgcaGCTATCCATTTTCGTAAGA
AGGGAGTTGGTTTGGTTTTGCTCTAGTAAGTTTCCTTAGCACGTCtttgt
ttcaatattttaaagggataatcagatttgagatatttagattaCAGAAA
CCTTCTGTGGTCCTTAAGTAAAACctcgaaatatttttgtgtaacaattt
tccaaaatcaagatatgaaaatttgttttcatgtttcaaaaaatgggttc
ttacagggttcttacgttgaaattatattgtttcatcctaaaagccaaaa
acttgtaacttaaatatctcgactttggaaaataattaggcaaaaacatt
ttgagattttggcCAGGACACTAGAAGAATCCCAAATACCAAGTATTACA
atccatctgattatcccttttgtTTGCCTTTAAATTGAAGTCATTAATTA
TCCCTTTATttgcattattttttgcgttaaaagtttcaaaatttgaaatt
ataatttttctaaatcataTTAATTTATTATCATATCAATTTCAGGCGTT
GAACAAGATACAATAGCAACGCGTGTTGGACATAAAATCAAAACTAAGGT
TCGTCATCATCTTTTATTAACTAAAAAAAGTTGTCGAGTTTTTGCAGTTT
TCAATgggatattttgattttgaagcgCATTTTGCATTTTCAATGATATC
AGGGCTGATCAGGGAATAATTTTGATGTTATGTTTTGATGTCGATTTCCT
ATAAATCAAATGTGTTTTTTAGGGAGCATTAGCAATGTCTTTCAGTATCT
TTGGAACATCTTTGTGCTTTATCACATCTCATTTCACGTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040979XLOC_040979Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065363-exon-scaffold_439-1491911889:323550..324985TCONS_00065363-exon-scaffold_439-1491911889:323550..324985Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1510915933:323550..324985TCONS_00065363-exon-scaffold_439-1510915933:323550..324985Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1575043694:323550..324985TCONS_00065363-exon-scaffold_439-1575043694:323550..324985Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1491911889:325307..325404TCONS_00065363-exon-scaffold_439-1491911889:325307..325404Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1510915933:325307..325404TCONS_00065363-exon-scaffold_439-1510915933:325307..325404Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1575043694:325307..325404TCONS_00065363-exon-scaffold_439-1575043694:325307..325404Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1491911889:325750..325874TCONS_00065363-exon-scaffold_439-1491911889:325750..325874Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1510915933:325750..325874TCONS_00065363-exon-scaffold_439-1510915933:325750..325874Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1575043694:325750..325874TCONS_00065363-exon-scaffold_439-1575043694:325750..325874Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1491911889:326345..326397TCONS_00065363-exon-scaffold_439-1491911889:326345..326397Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1510915933:326345..326397TCONS_00065363-exon-scaffold_439-1510915933:326345..326397Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1575043694:326345..326397TCONS_00065363-exon-scaffold_439-1575043694:326345..326397Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1491911889:326572..326640TCONS_00065363-exon-scaffold_439-1491911889:326572..326640Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1510915933:326572..326640TCONS_00065363-exon-scaffold_439-1510915933:326572..326640Clytia hemisphaericaexon
TCONS_00065363-exon-scaffold_439-1575043694:326572..326640TCONS_00065363-exon-scaffold_439-1575043694:326572..326640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:323550..326640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.41995	1.99202	0.966402	0.17496	14.8446	13.0556	9.26175	11.3729	8.96314	7.78131	8.5103	5.10501	3.63149	2.79035	2.55424	3.17177	3.60557	3.83569	2.96544	4.84937	4.43063	5.71499	2.80721	4.68398	10.5206	14.6706	4.31272	2.63901	2.5063	3.54999
Blast
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BLAST of TCONS_00065363 vs. Swiss-Prot (Human)
Match: INP5E (72 kDa inositol polyphosphate 5-phosphatase OS=Homo sapiens GN=INPP5E PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 2.816e-44
Identity = 82/138 (59.42%), Postives = 106/138 (76.81%), Query Frame = 3 
Query: 1365 DISNYLPDKKLKIFVGTWNMKGTKXXXXXXXXXXXXXESIYLQDVYVIGTQEGTPFRREWQVRLQETFGPSHVLMQSSNFGVLQLSIFVRRELVWFCSSVEQDTIATRVGHKIKTKGALAMSFSIFGTSLCFITSHFT 1778
            +++ Y PD+ + +FV TWNM+G K LP SLD+FLLP E+ Y QD+YVIG QEG   RREW+ RLQET GP +VL+ S+  GVL +S+F+RR+L+WFCS VE  T+ TR+  +IKTKGAL +SF+ FGTS  FITSHFT
Sbjct:  289 ELARYFPDRNVALFVATWNMQGQKELPPSLDEFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFT 426
The following BLAST results are available for this feature:
BLAST of TCONS_00065363 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
INP5E2.816e-4459.4272 kDa inositol polyphosphate 5-phosphatase OS=Hom... [more]
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