XLOC_040979 (gene) - C. hemisphaerica

Overview
NameXLOC_040979
Unique NameXLOC_040979
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_439:322392..326640+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040979 ID=XLOC_040979|Name=XLOC_040979|organism=Clytia hemisphaerica|type=gene|length=4249bp|location=Sequence derived from alignment at scaffold_439:322392..326640+ (Clytia hemisphaerica)
ATCACCCTTTACTTCTAAGAACGAAAAGACAAATTGTCAAAATGGTACCA
CTAGTTACGACTgtgaaaaatcataaacaattTTCATATGAATTTTTTGG
TCCtgtgatttgtttttatttggcTTTGGTTTATTTACATTTATTGTGGA
ACTCGAAATGCTATTAGAATGAGTAATGTAGATAATGATCATTCTGGAAG
CAATTACACTTACtacaatcaaaacattgaattacCACGCGTAAGTAGTA
TTCCTTCATCACCTCGGGAAGAAAATCATCGTACAGAATTAGTCAAGAAT
AATACATTTTTTACCCAAGAAGATGGAGCTATTCAACAAAATGATTCCTT
TTCTGGAGTCTCAAATGTTATCGAATCTCTTAATAATTATGTTAGACCCA
TAAATGATGATAAAAACGATGAggatgatgataaaacagttGATGATACA
GATGACAAACCATTATTTGTTCCATGCCCTCCATCAAAGCCAAAACNATA
TAAGCTTCACGTGTCGTTTTGTGAACTCAAAAGAAGAATAGAGACctata
aaaacaataatataCCGTCTAACTTTTTTGTTAAATACCGTACTACCGTA
TCTACAATCAAACGTTTTTTTCTGAGCATTGATTTCATTAGTAGCTGCCA
AGCATTACACTTTCATTTGAGTAGTCTTTgaccaaaaagagagaaaatac
ccaaaaatccGGGTAATCTTTAGAACGGTATATACTTTTAACTGCTGTAA
TTTAGTATTACAGTTTACGGTAGGATTGCAGAATTTTTTCCGTATGTATA
Gttatactttttttgttttttctaccttgggtaccagaggccaagttttc
atcagaaaagatatttatttgagctgtgatactcacggtacttTTTTTCA
TGACGTTTGAATGACTTTTAGAAAAGTGATTTATTGCTAGGTTGCCATTT
CTTTATCCCCTTTTCTCGAAAAAAAGCCCTTGACAACCACCACGATTTTG
TCTTGTAGTAGTTACCGCTTTTTTCCGTAGTAATTTCTTTCGGATGCGCT
TTTTGCCGGATAGGACCGAgcctaaaaaaaaattgtttttaaattttctc
gaTCATCCAAGTGCTTTTTTGATACAAATCACCCTTTACTTCTAAGAACG
AAAAGACAAATTGTCAAAATGGTACCACTAGTTACGACTgtgaaaaatca
taaacaattTTCATATGAATTTTTTGGTCCtgtgatttgtttttatttgg
cTTTGGTTTATTTACATTTATTGTGGAACTCGAAATGCTATTAGAATGAG
TAATGTAGATAATGATCATTCTGGAAGCAATTACACTTACtacaatcaaa
acattgaattacCACGCGTAAGTAGTATTCCTTCATCACCTCGGGAAGAA
AATCATCGTACAGAATTAGTCAAGAATAATACATTTTTTACCCAAGAAGA
TGGAGCTATTCAACAAAATGATTCCTTTTCTGGAGTCTCAAATGTTATCG
AATCTCTTAATAATTATGTTAGACCCATAAATGATGATAAAAACGACGAg
gatgatgataaaacagttGATGATACAGATGACAAACCATTATTTGTTCC
ATGCCCTCCATCAAAGCCAAAACCAACAAGTGGACGAATAGTTAGGGCAC
AAGTTCATCCAAAGCCTAGACATCAGCCAAGAGAAGACCAATCTTTTGCC
ATTAAGGAAGAAGATTTATCTTTTAACAATCGTTTACCAAGTCTTTCaaa
tgatgattttgatttAAACAAGCCATCTTCAAAAAACTtgcaagaaaaaa
atcaaagtagCACACCACGTATCAAGTCCGACAGTTCAATAAACAAATCA
CATGACAAGAAGAACAATATATCAAGAGATCAGAGGCTCATTAATCAGTA
TACAGAATTACTAAATGAAAGGTTCAGAGATTTTTCTTCGGAATCTGAGA
CCGAAGGAAAAGATTTTACAGTATCAGTAAGCAGTCTTAGCAGTGATGAA
GATACTTATGATAATActgatgatgaagatgaaaatcaGCTTGAAGGGCA
AACACTTACGCaagaaaaatttgagccatTATACAGTTTAcccattaaaa
aatcaaaaaaaattgacaagaaCAGCTTTAACAGTATACTTATTTCTAAT
TCAAATATGGGTGGAAGTCTACACCGGACAGGATCTTTGCCAGATCTAAG
GTCAATTGCTGATATGAGCTTGAAAAAAGTAAGTCATGTAAGCAAAAATG
AGTCCGAAGCTGAGAGTGAACCAGGAGCAAAAATAGGATATAAGTTCAAA
CCACTACCACCAATTCCTGGAACATCGTCAAATATAAACAATACTGGGTT
GTATGAAACAATTGATGGGttatcaaaactttcaaaaaatgcagttaCCA
AAACTGAGAGTATTGAGTCAAATAAACGGAAAACATTTAAAGAGATTGCC
ACGATATTAACTTTAGTGCCAAGGTTGACAACAAATTCTGTTAGAAGCCG
AAAGAATGATCATAGACTAGCTGACATTAGCAATTATCTTCCTGATAAAA
AGTTGAAGATATTTGTTGGTACCTGGAATATGAAAGGGACTAAGGTATGG
ATATGATACAAAAGATGCTTTTTTTGGTCTCTTCTGTTTACAGTTCCCTT
AATTGACAAATTTTGCTATTATAATGATATTATCTTGGCTATTATTTTTA
GGTAGTGTGATTTTGTGGTATATTCTCTCCAATGACATAAATTTTAATAT
TCTCTGTCATAAATTTTGCGCGTGTTACACCAAGCTCATAacagtttctt
tttttatattatatctCATGTTTGGAAAATAAGCTTTGATATTAATCTCC
ATTATTTACTCTGTAATTTGTACAAGTTGATTATGAGATTATcaaatatt
gttttttgtttctaGTTTTTACCTTCATCACTGGACGATTTTTTGCTACC
ACCTGAAAGTATTTATTTACAAGATGTCTATGTCATTGGAACTCAAGAAG
GAACACCATTCAGGTAAGGTGGTTTCATCAGAAATTAACCTAAAATGAAA
GACATTATAAGTATGATCCTCATGGCaatcaggccatttttcatacCTTT
TTAGCGTCAGGTTATCCGGAGTTGACCTTCTTGAATTATGAAAATAaggg
taaaaacagcctttcttttgaaaaaaaacatcagaaaaagtTCCCTTTTT
GGTCTCTATCTgacgctgccctgcctttctagaATTCGGCCTGGCAATAC
TCTTgtattttttaggaaatttttttcaactgttttataaaaaaagctat
TGTACCAGCTTTAGTGCAACAAAGAGTAGTTgtgaatcttcttttttttt
aattttaggagaGAGTGGCAAGTTAGGTTGCAAGAGACCTTTGGACCTTC
GCATGTTTTGATGCAATCAagtaattttggtgttttgcaGCTATCCATTT
TCGTAAGAAGGGAGTTGGTTTGGTTTTGCTCTAGTAAGTTTCCTTAGCAC
GTCtttgtttcaatattttaaagggataatcagatttgagatatttagat
taCAGAAACCTTCTGTGGTCCTTAAGTAAAACctcgaaatatttttgtgt
aacaattttccaaaatcaagatatgaaaatttgttttcatgtttcaaaaa
atgggttcttacagggttcttacgttgaaattatattgtttcatcctaaa
agccaaaaacttgtaacttaaatatctcgactttggaaaataattaggca
aaaacattttgagattttggcCAGGACACTAGAAGAATCCCAAATACCAA
GTATTACAatccatctgattatcccttttgtTTGCCTTTAAATTGAAGTC
ATTAATTATCCCTTTATttgcattattttttgcgttaaaagtttcaaaat
ttgaaattataatttttctaaatcataTTAATTTATTATCATATCAATTT
CAGGCGTTGAACAAGATACAATAGCAACGCGTGTTGGACATAAAATCAAA
ACTAAGGTTCGTCATCATCTTTTATTAACTAAAAAAAGTTGTCGAGTTTT
TGCAGTTTTCAATgggatattttgattttgaagcgCATTTTGCATTTTCA
ATGATATCAGGGCTGATCAGGGAATAATTTTGATGTTATGTTTTGATGTC
GATTTCCTATAAATCAAATGTGTTTTTTAGGGAGCATTAGCAATGTCTTT
CAGTATCTTTGGAACATCTTTGTGCTTTATCACATCTCATTTCACGTGT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065362TCONS_00065362Clytia hemisphaericatranscript
TCONS_00065363TCONS_00065363Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00065362-proteinTCONS_00065362-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_439supercontigscaffold_439:322392..326640 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.24	3.15	2	1.11	22.9	17.5	15.67	14.42	11.65	10.07	12.01	7.58	4.44	4.11	4.01	4.49	5.42	5.25	5.38	6.03	8.01	7.13	7.07	9.84	13.11	16.21	7.77	7.41	6.05	6.48