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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065361 ID=TCONS_00065361|Name=TCONS_00065361|organism=Clytia hemisphaerica|type=transcript|length=1621bp
CTTAAAAGTCCCTCCCCTTCTTGTAATCACCTCCTATAAATACATCGGTG
TAAAATTAGCAGCCTAAATAAAGGGTGTAGGATTAAAGAAGATTAACTCT
GAACGGAATAAAAACCAGTGTTTTGTACCAAAAGCTTCATTTCATAAACT
CAGCTGCTGTTAATCGGATTGAGCAGTCTGAATCGGAGGTATTAGCCACA
CGATATCTCTACAATCAAGACGAAAAGAATATCTGAGTGAAAAAGTATAG
TCCAGTGGAGTACGGTTGTTCATCATGGCATATTTATCAAATAATTTCAT
GAGTACTTTATATAAACAGTATATTCACAACAAAACAGATGAAACTTTAA
GCTCTggacaaatttcaaaacaaacgccAGAAGAGAGTCTTGACATCCCT
AATGCTTCTGGATCATTCTATTTGTTAACATCAGCCAATACGACGGTTAT
CGTTATTTTCTCTTGTGTTCTGTTGACTGGAGTTGTTGGCAATCTTGGTT
TGATATTCGCTGCATCAAGAATGAAACATAAAATCCGAATCTTGACAAAC
CAGTTCAAACTCTTATGTGGAATCAATGTAATCACATCTTTCTTTATACC
CACATTACTAATTTACCAAGTCATCAATGATTACCAAAGATGGGAGTTTG
GAAATTTCGGTTGCACCATCTTACCATCTTTAAACCAGTTCTCAATCACT
GCTTCTCAAGGTATCTGTATTATGATGTTACTTGAACaatatattttaat
gaccagaccgTTTTACCAATCACCTGCAAACTTaccttcaaaaaatattc
tcagttggtgttttgttatcatttttcttgCTGTCTTGATGGAGATCCCT
TATGCCAGTACCttgaaaatcatccaaaacgAAGAGATCAATACTTGTTT
GTCTGTTGGTGCACATGGTGTCCAGTTAGCAGCATCATCCATTCATTTTG
TAAGAGATGCTATTATGCTGGCAGTAACTGTTTACCTTCTGCTTAAGTGT
CAGAAAgtcatttccaaaaatttgcaCATGAACTCGACCAAGACCAACTG
TAGAAGAAACATCGCTGGTGTCATAGCTTTAACTCAACTTTTCCTGGTCA
TCCCCTCAGATTTCTTCCATGTATTCGTCCAATCCGTCAATTTGACACAT
AAAGGCAATACCAAATGGCAAAATAAATCGAACAGACTCAATGATGTAAA
CAcagtctttgaaatcattcaaaTGCTGAGATTAGTATCAAATgttttca
tcttccttttcgTATTGATGAAAAACTGTGGCACAACAGAATCAACAACT
AACGTTGTAATCTCAACTGAGCAATGTGAACATTTAAGAGAAGCAACTTC
ATTCCCAGGTTTCAGCGATGGAAAGAGACgattgaaaaataaacttttgg
tGAAAATCATTGATGAAGAAGATCCATATTATTTGACTGAAACATCTTCG
TGTGcatcttcaaatttttaaaaatatattattttcttATGGATTGTAAA
TTCTTTAAAACTAGTTataattgaatttcaaattaccctgttttcatttc
aatgtcaaaaatattttaaaaaatataatacATATATCATCGGAATCGGC
GAATGAATCGGTACCTCCGAC Run BLAST on NCBI protein sequence of TCONS_00065361-protein >TCONS_00065361-protein ID=TCONS_00065361-protein|Name=TCONS_00065361-protein|organism=Clytia hemisphaerica|type=polypeptide|length=398bp
MAYLSNNFMSTLYKQYIHNKTDETLSSGQISKQTPEESLDIPNASGSFYL
LTSANTTVIVIFSCVLLTGVVGNLGLIFAASRMKHKIRILTNQFKLLCGI
NVITSFFIPTLLIYQVINDYQRWEFGNFGCTILPSLNQFSITASQGICIM
MLLEQYILMTRPFYQSPANLPSKNILSWCFVIIFLAVLMEIPYASTLKII
QNEEINTCLSVGAHGVQLAASSIHFVRDAIMLAVTVYLLLKCQKVISKNL
HMNSTKTNCRRNIAGVIALTQLFLVIPSDFFHVFVQSVNLTHKGNTKWQN
KSNRLNDVNTVFEIIQMLRLVSNVFIFLFVLMKNCGTTESTTNVVISTEQ
CEHLREATSFPGFSDGKRRLKNKLLVKIIDEEDPYYLTETSSCASSNF Run BLAST on NCBI transcript from alignment at scaffold_439:317282..318964+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065361 ID=TCONS_00065361|Name=TCONS_00065361|organism=Clytia hemisphaerica|type=transcript|length=1683bp|location=Sequence derived from alignment at scaffold_439:317282..318964+ (Clytia hemisphaerica)
CTTAAAAGTCCCTCCCCTTCTTGTAATCACCTCCTATAAATACATCGGTG
TAAAATTAGCAGCCTAAATAAAGGGTGTAGGATTAAAGAAGATTAACTCT
GAACGGAATAAAAACCAGTGTTTTGTACCAAAAGCTTCATTTCATAAACT
CAGCTGCTGTTAATCGGATTGAGCAGTCTGAATCGGAGGTATTAGCCACA
CGATATCTCTACAATCAAGACGAAAAGAATATCTGAGTGAAAAAGTATAG
TCCAGTGGAGTACGGTTGTTCATCATGGCATATTTATCAAATAATTTCAT
GAGTACTTTATATAAACAGTATATTCACAACAAAACAGATGAAACTTTAA
GCTCTggacaaatttcaaaacaaacgccAGAAGAGAGTCTTGACATCCCT
AATGCTTCTGGATCATTCTATTTGTTAACATCAGCCAATACGACGGTTAT
CGTTATTTTCTCTTGTGTTCTGTTGACTGGAGTTGTTGGCAATCTTGGTT
TGATATTCGCTGCATCAAGAATGAAACATAAAATCCGAATCTTGACAAAC
CAGTTCAAACTCTTATGTGGAATCAATGTAATCACATCTTTCTTTATACC
CACATTACTAATTTACCAAGTCATCAATGATTACCAAAGATGGGAGTTTG
GAAATTTCGGTTGCACCATCTTACCATCTTTAAACCAGTTCTCAATCACT
GCTTCTCAAGGTATCTGTATTATGATGTTACTTGAACaatatattttaat
gaccagaccgTTTTACCAATCACCTGCAAACTTaccttcaaaaaatattc
tcagttggtgttttgttatcatttttcttgCTGTCTTGATGGAGATCCCT
TATGCCAGTACCttgaaaatcatccaaaacgAAGAGATCAATACTTGTTT
GTCTGTTGGTGCACATGGTGTCCAGTTAGCAGCATCATCCATTCATTTTG
TAAGAGATGCTATTATGCTGGCAGTAACTGTTTACCTTCTGCTTAAGTGT
CAGAAAgtcatttccaaaaatttgcaCATGAACTCGACCAAGACCAACTG
TAGAAGAAACATCGCTGGTGTCATAGCTTTAACTCAACTTTTCCTGGTCA
TCCCCTCAGATTTCTTCCATGTATTCGTCCAATCCGTCAATTTGACACAT
AAAGGCAATACCAAATGGCAAAATAAATCGAACAGACTCAATGATGTAAA
CAcagtctttgaaatcattcaaaTGCTGAGATTAGTATCAAATgttttca
tcttccttttcgTATTGATGAAAAACTGTGGCACAACAGAATCAACAACT
AACGTTGTAATCTCAACTGAGCAATGTGAACATTTAAGAGAAGCAACTTC
ATTCCCAGGTTTCAGCGATGGAAAGAGACgattgaaaaataaacttttgg
tGAAAATCATTGATGAAGAAGATCCATATTATTTGACTGAAACATCTTCG
TGTGcatcttcaaatttttaaaaatatattattttcttATGGATTGTAAA
TTCTTTAAAACTAGTTataattgaatttcaaattaccctgttttcatttc
aatgtcaaaaatattttaaaaaatataatacatATATCATCANATTACCC
TGTTttcatttcaatgtcaaaaatattttaaagaatataatACATATATC
ATCGGAATCGGCGAATGAATCGGTACCTCCGAC Coding sequence (CDS) from alignment at scaffold_439:317282..318964+ >TCONS_00065361 ID=TCONS_00065361|Name=TCONS_00065361|organism=Clytia hemisphaerica|type=CDS|length=1197bp|location=Sequence derived from alignment at scaffold_439:317282..318964+ (Clytia hemisphaerica)
ATGGCATATTTATCAAATAATTTCATGAGTACTTTATATAAACAGTATAT
TCACAACAAAACAGATGAAACTTTAAGCTCTggacaaatttcaaaacaaa
cgccAGAAGAGAGTCTTGACATCCCTAATGCTTCTGGATCATTCTATTTG
TTAACATCAGCCAATACGACGGTTATCGTTATTTTCTCTTGTGTTCTGTT
GACTGGAGTTGTTGGCAATCTTGGTTTGATATTCGCTGCATCAAGAATGA
AACATAAAATCCGAATCTTGACAAACCAGTTCAAACTCTTATGTGGAATC
AATGTAATCACATCTTTCTTTATACCCACATTACTAATTTACCAAGTCAT
CAATGATTACCAAAGATGGGAGTTTGGAAATTTCGGTTGCACCATCTTAC
CATCTTTAAACCAGTTCTCAATCACTGCTTCTCAAGGTATCTGTATTATG
ATGTTACTTGAACaatatattttaatgaccagaccgTTTTACCAATCACC
TGCAAACTTaccttcaaaaaatattctcagttggtgttttgttatcattt
ttcttgCTGTCTTGATGGAGATCCCTTATGCCAGTACCttgaaaatcatc
caaaacgAAGAGATCAATACTTGTTTGTCTGTTGGTGCACATGGTGTCCA
GTTAGCAGCATCATCCATTCATTTTGTAAGAGATGCTATTATGCTGGCAG
TAACTGTTTACCTTCTGCTTAAGTGTCAGAAAgtcatttccaaaaatttg
caCATGAACTCGACCAAGACCAACTGTAGAAGAAACATCGCTGGTGTCAT
AGCTTTAACTCAACTTTTCCTGGTCATCCCCTCAGATTTCTTCCATGTAT
TCGTCCAATCCGTCAATTTGACACATAAAGGCAATACCAAATGGCAAAAT
AAATCGAACAGACTCAATGATGTAAACAcagtctttgaaatcattcaaaT
GCTGAGATTAGTATCAAATgttttcatcttccttttcgTATTGATGAAAA
ACTGTGGCACAACAGAATCAACAACTAACGTTGTAATCTCAACTGAGCAA
TGTGAACATTTAAGAGAAGCAACTTCATTCCCAGGTTTCAGCGATGGAAA
GAGACgattgaaaaataaacttttggtGAAAATCATTGATGAAGAAGATC
CATATTATTTGACTGAAACATCTTCGTGTGcatcttcaaatttttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065361-exon-scaffold_439-1491911889:317282..318862 | TCONS_00065361-exon-scaffold_439-1491911889:317282..318862 | Clytia hemisphaerica | exon |
| TCONS_00065361-exon-scaffold_439-1510915933:317282..318862 | TCONS_00065361-exon-scaffold_439-1510915933:317282..318862 | Clytia hemisphaerica | exon |
| TCONS_00065361-exon-scaffold_439-1575043694:317282..318862 | TCONS_00065361-exon-scaffold_439-1575043694:317282..318862 | Clytia hemisphaerica | exon |
| TCONS_00065361-exon-scaffold_439-1491911889:318925..318964 | TCONS_00065361-exon-scaffold_439-1491911889:318925..318964 | Clytia hemisphaerica | exon |
| TCONS_00065361-exon-scaffold_439-1510915933:318925..318964 | TCONS_00065361-exon-scaffold_439-1510915933:318925..318964 | Clytia hemisphaerica | exon |
| TCONS_00065361-exon-scaffold_439-1575043694:318925..318964 | TCONS_00065361-exon-scaffold_439-1575043694:318925..318964 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:317282..318964 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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