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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065350 ID=TCONS_00065350|Name=TCONS_00065350|organism=Clytia hemisphaerica|type=transcript|length=3470bp
ATTTAgaataaatattaaatatttattaaaattctGAATGAATGAAAGTT
GATTTGAAAGAAAGAGTTTtacaaattctaaaaaaatgcttaaaatttta
caaaaatacgATATAACAGCATGAAAGTATAGAAgtgtatgaaaaaaatt
atttcccaaaatttaaaacaacaaaataaccACGTTTACAcaaaattata
aattaaaaCACAATTTATGGTATATCTATAGAACGTACgaaaaaggataa
aaaacaGGCAGTATGGCGTATCAAGGTCGATAAAATGTAAAAACATTGTG
GATCGTGGGGCAAAGTGTCTAGCTTGTCCAGAATGTCGTGGTTTTGAAGA
GCACATTTTTCGATTTACGTTCGTATGAAAtcgtgtgaaaaaaaaaaaaa
aatcaccaaaacaaAGCTCTAAACCTTTTAAGTCACTTTTAAAgttttac
agcaaaaaaaatctataaaaatatttctataaaaTATGCACAAAAGTTca
agaagaaaattgaaaaaaactcacCTTAAAAATATATAGAGACCATTTAC
AAAGGAGAGTGTCAGATAGTAGCGAATAATAGGGATCTTAAGAATCCTGT
GTTTCAAAAGGGTTTAAAAATTTCACCACTGCAAATTTAATCATTCTATG
GGAAAATATAAAAGGCGTTGACAATAAAGATAATTCTAAAATCTATCAAA
ATCTTATAGACAAAAACCTCTAAAGCTAAAAAGTCAGGCTTAAAAACATA
AGACCGGGGGCAATCTGCCAAAAGGGACCtctcattttaaaatttatcat
aaaAAGGGGATCtctaaaaaatctaatttctaaaaaaaacatatctAAGA
AAGGAATGGCGTCTCCAATAAAATTATTTAACAGATAGCGACATTTCAGT
GTTTACACTATGCTCTGAATGATCAACTGATAAAGTTGCATGTCCGTTTT
TATTTCCGCCATCAACCACGTCCGGTATTTTAAAAACATCAGTGGGTGAC
GGAACTTGATCAGATTCGACATCAGATATTGTGCGGTCATGAGTTGATGT
ATCCGAAGACGactgcttcttcttcttcttgaatAAGCTTAATGTTTTTC
TCTTAGTAGGCGATTTAGGAGCAGGCGGTTGTTCTTCGGCGTGTTCCGCC
ACAGAAACCGGGCGTTGTTTTTTATCATCTTTCTTATGACTCGGGTGGAT
GACATCGGCAAGGAAATCAAGACTTTTGGGACGCTTCAATTTCTTGGacg
aatttttcttttctaatttaTGATCGTCATTATGCTCCCAGATGTCTGAT
TCGTTTTGAGGGGAGAGCTGTTGTTGTTTCTCTTTCTTCTTACTACTGCT
TTTACGAAGACCAAACTTGAAGcgtctctttttctttttctcagtGTTTA
TAGAGCCTGTCATCGATAAAGAGTCATCGTCGGGCGAATAAATACTACTA
GCGTTATCATCATGTAAACTGACGTCCATCATTCCGTCATCATGTCCGTC
AGTGACGTCATTAGTGACGGTATCATCAGCTGGTTCGACTGATATTTGAG
GTATCAATTCACTGGTTGCTAACGGGCTTTCCAGCTCTCCTTCGATCGTC
GGTAACGGTTCGACTTTTTTCTCGTCCTctacgatgacgtcattgttgtT
ATCATTCATCATTTCTTCTGGCCAATCAGAAATCGACACGTCATCAGTGA
TTTTATTCTCGGAGATTCCCTCGTCAACGACTTCTTCTTTAACGGGAGTC
GGTGTAACGACAAGTTCAACTGACGGAAGAGGTTTCTCagtttctatttt
atttttcgatttctttttcaatcttaatttcttctttttagtgGTAGAAG
AACTATCTTCGAATGGTTTACGATCGATGATGCTTTCTAACAAAGATTTC
ACCTCCTCTGAGGCTTGAGCAGGACTTGGTGGGTCATCTTCTGGTGACAC
CAAATCCTCAACAGAAGCTACTTGTCTACTGTCGATCGAAAAGGATGCGT
CAGACTCAATAGGAGCTGGTGAAGGTTCAGGTTGCTTGACATCAATAGAA
ACTGACTGCTCTGGTAACGTTTGATCAACACCAGTATCAACGATTGGCGG
TAAATGAGTAGACGATTCCTCGATAACAGGATCTTCAACTTTGGCTGCAA
TCTCCACCGATGTGGTCAACTCGTTATCAGAATGTTCAGTGGAACTTTTA
CGACTTCGTCTTTTCATTCGTGACATTAAAGATCctgatttctttttctt
ctcattGATCGGTTCTTCCACCTTTAGTTCTGCAGCGTCCGTAGCTTGAA
CAATTTCGGTGGGGACGTCAATAGCACGCTCTTGAAAGTCACTCTTGACC
GGAGTTGCACTAACGAGTTGGACGTCTCCCGATGGTGTTTCCGacatatt
tttgtttgaaatattgGATGACTTCTTTTTCTTAAATGGAAATCGCTTCT
TTTTGCCGGTGGATACTGGTTTGGATTCTTCGACGGGTGGTTTTTCCAGT
GTCGGCGCCGGCTCTTCAACCTTCGCCACGGGTGTAGCTTTCGTTTCGAG
GGAAGCGCCCCAATTGTTATCAGCTTTTTTCTTAGTAGCATTCTTGGAGC
GTCCTCCAGGTGAATTGGCTTCAAACATGCTTAAAGTACCAGCAACTGTC
CCTGATACAGGTCTTCCGTTGGAGCCTCTCAACGATTCCTGCCGTCCTTC
ACGCAACGAATTCAAACTGGTTGTCGACGATGATGATGGACTCTTTTTAA
ATTGACCTGAAGCCTTTTGatcaaataaaagtttgttttgtaATACCGTA
CTGGTCCGAGGTGAACCACGTCTGCTGCCTGATTCATCAATACTCCGTCG
CGAACTGATACTTCGGTTGGATGATGATCGAGACATCAAAGTGGGTGAAT
CAGCTTGTGGTGGAGTTTCAGCCTTTGGTGGAGTTGGTATCTCTTCAGTT
TTTCGTCTGTTTTTTAATCCCTTCAAGCCTTTACTTTTCGGCTTCTCAGC
AACATTATCTGATTGCTTTGGTAAAACTTCCTCTGGTTTAGATTCTGAAA
TTGGAGCAACCGGTACGTCGACATCAATCTTGATTTCTACATCGGCTCGT
TCCTGGTTGTCTGTGAAAGGGACGTCAATGTCTGATTTCTCGATAAGAGA
TTCTTCGGGTTTCTCGTTTGTGGAGATCTCAACTGAAGGCTTTTCTGGTG
AAGCAGCAACATAAATGTTATCTGAAATATCATCAAATGTAGGGGATATA
TTCGACGTTGGCGATTGCGATGAAGGAGGTGTCATTCCAATTGCTGATTC
CGGTTCCTCCTCATCAAGGTGGACATCCAACTGCAGATCATCTGGTTGCT
CAACTCTTGACGACTTACGACTGGAAAGTTCGACATTGCCGACAAAATCA
ACGACGACGTATTCCTCTTCACCCAGTAAATGTTCTTTGGATTCGACACG
TCGCAATTTCGGCTTACGTC Run BLAST on NCBI transcript from alignment at scaffold_439:220533..224873+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065350 ID=TCONS_00065350|Name=TCONS_00065350|organism=Clytia hemisphaerica|type=transcript|length=4341bp|location=Sequence derived from alignment at scaffold_439:220533..224873+ (Clytia hemisphaerica)
ATTTAgaataaatattaaatatttattaaaattctGAATGAATGAAAGTT
GATTTGAAAGAAAGAGTTTtacaaattctaaaaaaatgcttaaaatttta
caaaaatacgATATAACAGCATGAAAGTATAGAAgtgtatgaaaaaaatt
atttcccaaaatttaaaacaacaaaataaccACGTTTACAcaaaattata
aattaaaaCACAATTTATGGTATATCTATAGAACGTACgaaaaaggataa
aaaacaGGCAGTATGGCGTATCAAGGTCGATAAAATGTAAACGATAAAAA
GGTAAAAACATTGTGGATCGTGGGGCAAAGTGTCTAGCTTGTCCAGAATG
TCGTGGTTTTGAAGAGCACATTTTTCGATTTACGTTCGTATGAAATCGTG
TGAAAAAAAANCCATTAGCGATTTTAGAAAGGCATTTAATACAATTGACA
TGAAGACTATGTTGTACTATCTTTGTACTTCctcaagggaagaaattttg
ttggaaagaaaatgaaaacttgactgattttgtggatttttattttttcc
accaTCCGCAAAATAagattcccgccaaatttaatttcgtTCGACTTTTC
ACTATTTAGACCTTGAACAggtttattttcaacattttcactCTGATTTT
GATACTTGATTTTGACCCTAAACGggtttattttcaacattttcaccctg
attttgaaaccttgaaattcatggtctgccaaattaaattcccgccaaaa
tttcttccctgaaGGTAGTTGCTTatgataaaaaatgtgtacaacaCTTG
AACGGTACCGAACATTTATCTGTCACCTTGTAGGTTTTAAGGATGGAACG
AAAATCATTTAgaataaatattaaatatttattaaaattctGAATGAATG
AAAGTTGATTTGAAAGAAAGAGTTTtacaaattctaaaaaaatgcttaaa
attttacaaaaatacgATATAACAGCATGAAAGTATAGAAgtgtatgaaa
aaaattatttcccaaaatttaaaacaacaaaataaccACGTTTACAcaaa
attataaattaaaaCACAATTTATGGTATATCTATAGAACGTACgaaaaa
ggataaaaaacaGGCAGTATGGCGTATCAAGGTCGATAAAATGTAAACGA
TAAAAAGGTAAAAACATTGTGGATCGTGGGGCAAAGTGTCTAGCTTGTCC
AGAATGTCGTGGTTTTGAAGAGCACATTTTTCGATTTACGTTCGTATGAA
AtcgtgtgaaaaaaaaaaaaaaatcaccaaaacaaAGCTCTAAACCTTTT
AAGTCACTTTTAAAgttttacagcaaaaaaaatctataaaaatatttcta
taaaaTATGCACAAAAGTTcaagaagaaaattgaaaaaaactcacCTTAA
AAATATATAGAGACCATTTACAAAGGAGAGTGTCAGATAGTAGCGAATAA
TAGGGATCTTAAGAATCCTGTGTTTCAAAAGGGTTTAAAAATTTCACCAC
TGCAAATTTAATCATTCTATGGGAAAATATAAAAGGCGTTGACAATAAAG
ATAATTCTAAAATCTATCAAAATCTTATAGACAAAAACCTCTAAAGCTAA
AAAGTCAGGCTTAAAAACATAAGACCGGGGGCAATCTGCCAAAAGGGACC
tctcattttaaaatttatcataaaAAGGGGATCtctaaaaaatctaattt
ctaaaaaaaacatatctAAGAAAGGAATGGCGTCTCCAATAAAATTATTT
AACAGATAGCGACATTTCAGTGTTTACACTATGCTCTGAATGATCAACTG
ATAAAGTTGCATGTCCGTTTTTATTTCCGCCATCAACCACGTCCGGTATT
TTAAAAACATCAGTGGGTGACGGAACTTGATCAGATTCGACATCAGATAT
TGTGCGGTCATGAGTTGATGTATCCGAAGACGactgcttcttcttcttct
tgaatAAGCTTAATGTTTTTCTCTTAGTAGGCGATTTAGGAGCAGGCGGT
TGTTCTTCGGCGTGTTCCGCCACAGAAACCGGGCGTTGTTTTTTATCATC
TTTCTTATGACTCGGGTGGATGACATCGGCAAGGAAATCAAGACTTTTGG
GACGCTTCAATTTCTTGGacgaatttttcttttctaatttaTGATCGTCA
TTATGCTCCCAGATGTCTGATTCGTTTTGAGGGGAGAGCTGTTGTTGTTT
CTCTTTCTTCTTACTACTGCTTTTACGAAGACCAAACTTGAAGcgtctct
ttttctttttctcagtGTTTATAGAGCCTGTCATCGATAAAGAGTCATCG
TCGGGCGAATAAATACTACTAGCGTTATCATCATGTAAACTGACGTCCAT
CATTCCGTCATCATGTCCGTCAGTGACGTCATTAGTGACGGTATCATCAG
CTGGTTCGACTGATATTTGAGGTATCAATTCACTGGTTGCTAACGGGCTT
TCCAGCTCTCCTTCGATCGTCGGTAACGGTTCGACTTTTTTCTCGTCCTc
tacgatgacgtcattgttgtTATCATTCATCATTTCTTCTGGCCAATCAG
AAATCGACACGTCATCAGTGATTTTATTCTCGGAGATTCCCTCGTCAACG
ACTTCTTCTTTAACGGGAGTCGGTGTAACGACAAGTTCAACTGACGGAAG
AGGTTTCTCagtttctattttatttttcgatttctttttcaatcttaatt
tcttctttttagtgGTAGAAGAACTATCTTCGAATGGTTTACGATCGATG
ATGCTTTCTAACAAAGATTTCACCTCCTCTGAGGCTTGAGCAGGACTTGG
TGGGTCATCTTCTGGTGACACCAAATCCTCAACAGAAGCTACTTGTCTAC
TGTCGATCGAAAAGGATGCGTCAGACTCAATAGGAGCTGGTGAAGGTTCA
GGTTGCTTGACATCAATAGAAACTGACTGCTCTGGTAACGTTTGATCAAC
ACCAGTATCAACGATTGGCGGTAAATGAGTAGACGATTCCTCGATAACAG
GATCTTCAACTTTGGCTGCAATCTCCACCGATGTGGTCAACTCGTTATCA
GAATGTTCAGTGGAACTTTTACGACTTCGTCTTTTCATTCGTGACATTAA
AGATCctgatttctttttcttctcattGATCGGTTCTTCCACCTTTAGTT
CTGCAGCGTCCGTAGCTTGAACAATTTCGGTGGGGACGTCAATAGCACGC
TCTTGAAAGTCACTCTTGACCGGAGTTGCACTAACGAGTTGGACGTCTCC
CGATGGTGTTTCCGacatatttttgtttgaaatattgGATGACTTCTTTT
TCTTAAATGGAAATCGCTTCTTTTTGCCGGTGGATACTGGTTTGGATTCT
TCGACGGGTGGTTTTTCCAGTGTCGGCGCCGGCTCTTCAACCTTCGCCAC
GGGTGTAGCTTTCGTTTCGAGGGAAGCGCCCCAATTGTTATCAGCTTTTT
TCTTAGTAGCATTCTTGGAGCGTCCTCCAGGTGAATTGGCTTCAAACATG
CTTAAAGTACCAGCAACTGTCCCTGATACAGGTCTTCCGTTGGAGCCTCT
CAACGATTCCTGCCGTCCTTCACGCAACGAATTCAAACTGGTTGTCGACG
ATGATGATGGACTCTTTTTAAATTGACCTGAAGCCTTTTGatcaaataaa
agtttgttttgtaATACCGTACTGGTCCGAGGTGAACCACGTCTGCTGCC
TGATTCATCAATACTCCGTCGCGAACTGATACTTCGGTTGGATGATGATC
GAGACATCAAAGTGGGTGAATCAGCTTGTGGTGGAGTTTCAGCCTTTGGT
GGAGTTGGTATCTCTTCAGTTTTTCGTCTGTTTTTTAATCCCTTCAAGCC
TTTACTTTTCGGCTTCTCAGCAACATTATCTGATTGCTTTGGTAAAACTT
CCTCTGGTTTAGATTCTGAAATTGGAGCAACCGGTACGTCGACATCAATC
TTGATTTCTACATCGGCTCGTTCCTGGTTGTCTGTGAAAGGGACGTCAAT
GTCTGATTTCTCGATAAGAGATTCTTCGGGTTTCTCGTTTGTGGAGATCT
CAACTGAAGGCTTTTCTGGTGAAGCAGCAACATAAATGTTATCTGAAATA
TCATCAAATGTAGGGGATATATTCGACGTTGGCGATTGCGATGAAGGAGG
TGTCATTCCAATTGCTGATTCCGGTTCCTCCTCATCAAGGTGGACATCCA
ACTGCAGATCATCTGGTTGCTCAACTCTTGACGACTTACGACTGGAAAGT
TCGACATTGCCGACAAAATCAACGACGACGTATTCCTCTTCACCCAGTAA
ATGTTCTTTGGATTCGACACGTCGCAATTTCGGCTTACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065350-exon-scaffold_439-1491911889:220533..220818 | TCONS_00065350-exon-scaffold_439-1491911889:220533..220818 | Clytia hemisphaerica | exon |
| TCONS_00065350-exon-scaffold_439-1510915933:220533..220818 | TCONS_00065350-exon-scaffold_439-1510915933:220533..220818 | Clytia hemisphaerica | exon |
| TCONS_00065350-exon-scaffold_439-1575043694:220533..220818 | TCONS_00065350-exon-scaffold_439-1575043694:220533..220818 | Clytia hemisphaerica | exon |
| TCONS_00065350-exon-scaffold_439-1491911889:221690..224873 | TCONS_00065350-exon-scaffold_439-1491911889:221690..224873 | Clytia hemisphaerica | exon |
| TCONS_00065350-exon-scaffold_439-1510915933:221690..224873 | TCONS_00065350-exon-scaffold_439-1510915933:221690..224873 | Clytia hemisphaerica | exon |
| TCONS_00065350-exon-scaffold_439-1575043694:221690..224873 | TCONS_00065350-exon-scaffold_439-1575043694:221690..224873 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:220533..224873 + |
Blast
The following BLAST results are available for this feature:
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