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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065339 ID=TCONS_00065339|Name=TCONS_00065339|organism=Clytia hemisphaerica|type=transcript|length=4186bp
TTTGGCTTTCAAGGAGAACGAGTCTTGcaattctttattttcaagaaaat
gtttgattCTGTGCCATACTTCCTCTCCTTGTCTTGAAGTTGGAGCAGTT
GCCCAACGCAATAAATGTGAAATGGTTCCTTGCGATCGATTCAGGTAATG
CGTTGCAAAGTATCCTTGGCTGACCCAGTGATTACGGTGAAGCCATGCTT
TCAAAGCTTCTGCAATCTGATGAACTTCACGTTGACTGATTAGGTTATCT
TCCCAAAATGCTTTGCGATGTTGGTGAATAAGAGGACTTCTGGGAGTTGG
TTGTTGCGGGGGCTCCTGGTAGTGATGGTTGTTGGAATGATGATGGTTAT
GGTGATTCTGTTGGTGGTGGTGTTGGTGGGCTGAAATACAATGTGTATTA
TTTTGGTCCGCCCtcaaatatttttgcatatgAATTATATAGTGCATATA
TTATGTATAACAATGTGATAATGTGATACATGACAAAGTATTACAGGAGA
CAGAAGACAATACTAAGGTAGTAAAAAGAAGATAATTGTCTCTTACCGAT
TTCTGTATCGTCGAAAGAATCTCCACACGGGCACGATAATGCTCTCTTTA
ATTCTGGATtcctcaaaaaatgttttattttaatcATGTCTTCCACTTCT
CTAGTAGAAAGGTGCTCCTGCAAATCTACCATGGATAAAAGATCCTCCAA
GTGTCTTCTGTTTTCTTGTAAGATTAACCGAGCAAAATGTTCCTTGCACA
AGTGCTTATTGAGTGAGAACCACTCCAGTAATTCTACTGCTAaatccttt
gtattttccaCGAACTGGTTTCTATTTGAGTCATTCTCTGGTAGAAATGG
ATTTGAAGATGTGCCTGGTTCTTGGTGGTCACCTTGGCATTCGATTTTGG
CATATTTCAGTCTATTGATTattaaaaattgttcaaaatgttGACATGTG
TTGAAGGGTAGCTCAACTTGGTAGTTGCATCTCTTTTCTGCGATATGTTC
TTTGTGATTTACTTCTTCAGAATCATTGACTTTGTTCCCATCGGTGGAGG
GCGTTGGCGAGGGCGATGTTTTCTTTTTCGTCATTTCTTCCGTCAAAATG
TGTTGTTCATCATCTGTGTCAATGATGTAAACTGGTGGCGCCACCTCTTG
CGGTTGCGGTGCCGCTGAAGGTTGGGATGTAGGTGGAGGCGGTTTGGTAT
CTGGGCTTGTTTTCGGAGTTCCTTGTGCTTTATCGTTTGATCCGAAATTA
CGAGATATGATTTCCATGGATATGTTCTGTAGGTTTTTGATACTTGCTTC
AAGTTTACGTCCACGTTTTGTGTTTATCACTTCATGTTGTTTGGAAGTTT
GTAAAGGTAGTGGTGATACTATCGATTGGTTTGTATTACCTTGAAGTGGG
ATGGTGGGCGGGTTAATGATGGGCGGTTGTAGGCGTTGTGCTTGAACCAT
TCTCAATGGTTGATTTGGAACCATACTTGGAGATGGGAACATGTTTCTTG
GATGTGTATTAGCTGGTGGAAAGCCTCTGTTTTGAATGAAACTCTGAAGC
GGTTGATGGTAATGGTTAGAAGATAACGGCCCACGTTGCATTTGTCCGAG
CGGTGAAGTCATTGGAGTAGGGTATCTCAGAGCCCATTGACCGTTGACAT
TAACTGGTACTATTTTGTGTTGTTGACTGTTGATGTTGACATTGATTGGT
GGGATATTTGGTTGGTTCGTATGTCTTATTTGAGGTTTACCGTTGATGAG
TGATCCAATGTGCACTGGTAATTGTCTCATCTGCATGCCCATCATCTGGA
CACCTCTATTTTGATTCACTTGTTGGCCATTCAATAATGGTTTAGCTTGG
TTGCACTGGAGGGGAGCACGTTGGTTGATTGTTGTTGCTTGATTGGCTTG
AATCACTTCTGGGCTGATATTTCGGAGTTGTAAGACTTGTCCTTCTGCAG
TTTTGATTAAAATTGGCGAACGTTGTGGTTGGTTGATACTTGATTGTGGT
TGTGCTACAGAGAATGGGCCAACTTTCTGAGATAAGGCTTGGTTGACAAC
GATAGTTGTTGGTGGACGGATATTGTTTGGTAACATCGGTGAAATTTCTA
GTTTGTTTTGCATTGGTTTTGGGTCAGAACCAATTGGAGGGTTGACCTGT
TTTGTAATAATAGTTGGCTTTACCTTGGCTATCATTGCTGCAGGTCCATT
TGGTAATGTATTGTTGCTGGCCGAGCTGTTCGTTAAGGGTGCTTTTGGGA
GAATAACTTTGAATATGGGTGGTTTTAAACTATTTGGTAGGCTAGAATCT
GGCGAAGGTGAACCACTGCTTGGAGCATCACCAATAACAATGACTTTAGG
AGAGTCTCCATTTTTAGAGTTTTCCTTGGCTTGAAGTTTAGCAAGTTTCT
TCGAgattttttcttcctctttttctTTCCTCGTTGGTGTTACTTTAACT
CGAACTTTTCCTTTTATATTAGAAAGTCCTGATATAATTTGTGATGTCGG
TATCGTAGGTAGATCATGCGTTTCTGTGAGGTCCACAACAGGCTTTTGTA
CAGTTCTTTTCTCTTTCTTCTTCtcaattttgataatatctCTACTGAAA
GTTTCATACATAAGATCTTCCTCCACAGCCTTTGCTTTAGCACTTGGTTT
AACAGTCCTTTTTGATTTGGTCATAGAGGGGCTTTTTGTTGTCATAGAGG
GGCTTTTGGTTGCCCCAGTTGTAATGATAGGCTTTTGATGCGAATTCTTA
TATTTTCGCCCTTTTGCAGAAAAAGCAGCCATTTCTAAAATATCTTCGGG
TGGGGGTGGTGGGGCGTTGTCCATAACTTGTTCAACGTTCATATTCTCGT
TGTTGCACACTGTCAAGTCTGCACCCATTTCTTTTGCAATGTCTAAGAGG
TCATGTGAAGCTCTATCACGTGCAAGGTAATGGCTGAAAGTGTTTTGTTT
GTTATCTGTCATGTTTAACATGGAGCTCTCAAGACCATCATTCTTGAATT
GATCTAACATTGAAGTtaacatgtttttttgaaaCTGATAAAGACGAAAT
GGTGGTTTCCCTCTATCAGGTTGAGCACATTGAAACGCTGTTTGACTGAT
CAAGTCTGCACATAGATGCAAAGGATTTTGCCACGACTTGTTGGTTACAA
TCAAACAATTCTTAAACTCTTTTAACAATAAGTTGAATTTCTTCAACAAT
ATGTCCATATGTCCGTGAGTGCAATTGAAAACATACATTTCTTTAACCAT
AACATGAAGAACTGTATCCCCATCCTCAGTAACAACATTTTCTGGCTCGT
GGCCTGCATCGACCATGGCAAAACACCCAGCACATTTTCCCATCAAAGCT
ATATAGTGAAGCAAAGGAAAGTTTGTATTCTTCCCAGGATCAAATATAGA
GTCACTAGCTTGAAGGTTACCATTGCTTCCACCATAATACGAATTAATCA
AGTCAAGAAATACTAATGTTGTTCCTGAAtcattttcaatcatttttcta
GCACCCACAAGTAGTGGATGATGTTCTAATGTACAGTTTGTTTTACAGAA
CGGTGGACAATCAGAACGCAATCCTCCTTTTGGTTTCTTAGCAGGTGTAG
TCAAAGTTTccaatgatttctttttgatttttctcttcCCTGGGGCTGAT
GTTAACGGAACATCTGCTACCATCTTTGGAGTTTCTGATGGAGTACAAAC
ATCGATCATTTCTTGATCAGTATTACAACTGTCATTATTATCAGTGTTTT
CTACTTGTGGTTTTTCATCTTCGACAACTTTCCATTCTTTACTTTTCTCA
GGAGATCCTTGATTCATACGAATTTTCAATTTCCATTTTGGTTTAGTGTC
ACTACTACGAGATTTATCTAACAACTcagtattttcattgtttattaTAT
CTGATTGATCAATATCTTCAATAGTCTGAGAATCAGTGTCTGGGTCACAA
TCACTCGCTTGTGATGTATTAATGTCTGTTTTGCTTTCGTCTGCAGACAT
CTCTTCAGGTTTATCATCGATTTTGAGTTCACCATCATCTTCTGTGCTAC
ATTCTGTTTTGTTATCTTTGTCGATTTCAGATTCATCTTCGACTTTCATT
GGGGGTTCTTCATCGTCcattttatttgtttctttcTCTGAGCTTTCCTC
GTCAGACATGATGTTTTGTTTCTGATATCTTTACTC Run BLAST on NCBI transcript from alignment at scaffold_439:111763..116371+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065339 ID=TCONS_00065339|Name=TCONS_00065339|organism=Clytia hemisphaerica|type=transcript|length=4609bp|location=Sequence derived from alignment at scaffold_439:111763..116371+ (Clytia hemisphaerica)
TTTGGCTTTCAAGGAGAACGAGTCTTGcaattctttattttcaagaaaat
gtttgattCTGTGCCATACTTCCTCTCCTTGTCTTGAAGTTGGAGCAGTT
GCCCAACGCAATAAATGTGAAATGGTTCCTTGCGATCGATTCAGGTAATG
CGTTGCAAAGTATCCTTGGCTGACCCAGTGATTACGGTGAAGCCATGCTT
TCAAAGCTTCTGCAATCTGATGAACTTCACGTTGACTGATTAGGTTATCT
TCCCAAAATGCTTTGCGATGTTGGTGAATAAGAGGACTTCTGGGAGTTGG
TTGTTGCGGGGGCTCCTGGTAGTGATGGTTGTTGGAATGATGATGGTTAT
GGTGATTCTGTTGGTGGTGGTGTTGGTGGGCTGAAATACAATGTGTATTA
TTTTGGTCCGCCCtcaaatatttttgcatatgAATTATATAGTGCATATA
TTATGTATAACAATGTGATAATGTGATACATGACAAAGTATTACAGGAGA
CAGAAGACAATACTAAGGTAGTAAAAAGAAGATAATTGTCTCTTACCGAT
TTCTGTATCGTCGAAAGAATCTCCACACGGGCACGATAATGCTCTCTTTA
ATTCTGGATtcctcaaaaaatgttttattttaatcATGTCTTCCACTTCT
CTAGTAGAAAGGTGCTCCTGCAAATCTACCATGGATAAAAGATCCTCCAA
GTGTCTTCTGTTTTCTTGTAAGATTAACCGAGCAAAATGTTCCTTGCACA
AGTGCTTATTGAGTGAGAACCACTCCAGTAATTCTACTGCTAaatccttt
gtattttccaCGAACTGGTTTCTATTTGAGTCATTCTCTGGTAGAAATGG
ATTTGAAGATGTGCCTGGTTCTTGGTGGTCACCTTGGCATTCGATTTTGG
CATATTTCAGTCTATTGATTattaaaaattgttcaaaatgttGACATGTG
TTGAAGGGTAGCTCAACTTGGTAGTTGCATCTCTTTTCTGATGTACATGT
AAAGAAAGGATAAAAAGTACCTTTCAACCAGCGCACCGCACGTGTTTTCC
TTGTTGTCATACATTCTTCATGAATTACAGTAGAAATTTGGTTTGGAaaa
attggtttgttttgatttgtagTAATTTTACAGCTTGAATCATTTACAGT
AGACATTTAAAGCATCTCTCAAACTCTccttttgttttatcattttaaga
aaaatttcgtGTACAATCAGAACTTGGCTTTCGTTTTAGTGAGGAGTAAA
ATTTCTCCTTTcctgaactttatttttttttatgatattttgatattaat
ttAACTGATGCTCATGACTAGAATTTTATGCGATGCCTTATTGAATGTTG
ACTCATTcagaaaaaaacccaaaaagaatcgagaaaaaacaacaacaaga
agaagTGACTCACCGATATGTTCTTTGTGATTTACTTCTTCAGAATCATT
GACTTTGTTCCCATCGGTGGAGGGCGTTGGCGAGGGCGATGTTTTCTTTT
TCGTCATTTCTTCCGTCAAAATGTGTTGTTCATCATCTGTGTCAATGATG
TAAACTGGTGGCGCCACCTCTTGCGGTTGCGGTGCCGCTGAAGGTTGGGA
TGTAGGTGGAGGCGGTTTGGTATCTGGGCTTGTTTTCGGAGTTCCTTGTG
CTTTATCGTTTGATCCGAAATTACGAGATATGATTTCCATGGATATGTTC
TGTAGGTTTTTGATACTTGCTTCAAGTTTACGTCCACGTTTTGTGTTTAT
CACTTCATGTTGTTTGGAAGTTTGTAAAGGTAGTGGTGATACTATCGATT
GGTTTGTATTACCTTGAAGTGGGATGGTGGGCGGGTTAATGATGGGCGGT
TGTAGGCGTTGTGCTTGAACCATTCTCAATGGTTGATTTGGAACCATACT
TGGAGATGGGAACATGTTTCTTGGATGTGTATTAGCTGGTGGAAAGCCTC
TGTTTTGAATGAAACTCTGAAGCGGTTGATGGTAATGGTTAGAAGATAAC
GGCCCACGTTGCATTTGTCCGAGCGGTGAAGTCATTGGAGTAGGGTATCT
CAGAGCCCATTGACCGTTGACATTAACTGGTACTATTTTGTGTTGTTGAC
TGTTGATGTTGACATTGATTGGTGGGATATTTGGTTGGTTCGTATGTCTT
ATTTGAGGTTTACCGTTGATGAGTGATCCAATGTGCACTGGTAATTGTCT
CATCTGCATGCCCATCATCTGGACACCTCTATTTTGATTCACTTGTTGGC
CATTCAATAATGGTTTAGCTTGGTTGCACTGGAGGGGAGCACGTTGGTTG
ATTGTTGTTGCTTGATTGGCTTGAATCACTTCTGGGCTGATATTTCGGAG
TTGTAAGACTTGTCCTTCTGCAGTTTTGATTAAAATTGGCGAACGTTGTG
GTTGGTTGATACTTGATTGTGGTTGTGCTACAGAGAATGGGCCAACTTTC
TGAGATAAGGCTTGGTTGACAACGATAGTTGTTGGTGGACGGATATTGTT
TGGTAACATCGGTGAAATTTCTAGTTTGTTTTGCATTGGTTTTGGGTCAG
AACCAATTGGAGGGTTGACCTGTTTTGTAATAATAGTTGGCTTTACCTTG
GCTATCATTGCTGCAGGTCCATTTGGTAATGTATTGTTGCTGGCCGAGCT
GTTCGTTAAGGGTGCTTTTGGGAGAATAACTTTGAATATGGGTGGTTTTA
AACTATTTGGTAGGCTAGAATCTGGCGAAGGTGAACCACTGCTTGGAGCA
TCACCAATAACAATGACTTTAGGAGAGTCTCCATTTTTAGAGTTTTCCTT
GGCTTGAAGTTTAGCAAGTTTCTTCGAgattttttcttcctctttttctT
TCCTCGTTGGTGTTACTTTAACTCGAACTTTTCCTTTTATATTAGAAAGT
CCTGATATAATTTGTGATGTCGGTATCGTAGGTAGATCATGCGTTTCTGT
GAGGTCCACAACAGGCTTTTGTACAGTTCTTTTCTCTTTCTTCTTCtcaa
ttttgataatatctCTACTGAAAGTTTCATACATAAGATCTTCCTCCACA
GCCTTTGCTTTAGCACTTGGTTTAACAGTCCTTTTTGATTTGGTCATAGA
GGGGCTTTTTGTTGTCATAGAGGGGCTTTTGGTTGCCCCAGTTGTAATGA
TAGGCTTTTGATGCGAATTCTTATATTTTCGCCCTTTTGCAGAAAAAGCA
GCCATTTCTAAAATATCTTCGGGTGGGGGTGGTGGGGCGTTGTCCATAAC
TTGTTCAACGTTCATATTCTCGTTGTTGCACACTGTCAAGTCTGCACCCA
TTTCTTTTGCAATGTCTAAGAGGTCATGTGAAGCTCTATCACGTGCAAGG
TAATGGCTGAAAGTGTTTTGTTTGTTATCTGTCATGTTTAACATGGAGCT
CTCAAGACCATCATTCTTGAATTGATCTAACATTGAAGTtaacatgtttt
tttgaaaCTGATAAAGACGAAATGGTGGTTTCCCTCTATCAGGTTGAGCA
CATTGAAACGCTGTTTGACTGATCAAGTCTGCACATAGATGCAAAGGATT
TTGCCACGACTTGTTGGTTACAATCAAACAATTCTTAAACTCTTTTAACA
ATAAGTTGAATTTCTTCAACAATATGTCCATATGTCCGTGAGTGCAATTG
AAAACATACATTTCTTTAACCATAACATGAAGAACTGTATCCCCATCCTC
AGTAACAACATTTTCTGGCTCGTGGCCTGCATCGACCATGGCAAAACACC
CAGCACATTTTCCCATCAAAGCTATATAGTGAAGCAAAGGAAAGTTTGTA
TTCTTCCCAGGATCAAATATAGAGTCACTAGCTTGAAGGTTACCATTGCT
TCCACCATAATACGAATTAATCAAGTCAAGAAATACTAATGTTGTTCCTG
AAtcattttcaatcatttttctaGCACCCACAAGTAGTGGATGATGTTCT
AATGTACAGTTTGTTTTACAGAACGGTGGACAATCAGAACGCAATCCTCC
TTTTGGTTTCTTAGCAGGTGTAGTCAAAGTTTccaatgatttctttttga
tttttctcttcCCTGGGGCTGATGTTAACGGAACATCTGCTACCATCTTT
GGAGTTTCTGATGGAGTACAAACATCGATCATTTCTTGATCAGTATTACA
ACTGTCATTATTATCAGTGTTTTCTACTTGTGGTTTTTCATCTTCGACAA
CTTTCCATTCTTTACTTTTCTCAGGAGATCCTTGATTCATACGAATTTTC
AATTTCCATTTTGGTTTAGTGTCACTACTACGAGATTTATCTAACAACTc
agtattttcattgtttattaTATCTGATTGATCAATATCTTCAATAGTCT
GAGAATCAGTGTCTGGGTCACAATCACTCGCTTGTGATGTATTAATGTCT
GTTTTGCTTTCGTCTGCAGACATCTCTTCAGGTTTATCATCGATTTTGAG
TTCACCATCATCTTCTGTGCTACATTCTGTTTTGTTATCTTTGTCGATTT
CAGATTCATCTTCGACTTTCATTGGGGGTTCTTCATCGTCcattttattt
gtttctttcTCTGAGCTTTCCTCGTCAGACATGATGTTTTGTTTCTGATA
TCTTTACTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065339-exon-scaffold_439-1491911889:111763..112752 | TCONS_00065339-exon-scaffold_439-1491911889:111763..112752 | Clytia hemisphaerica | exon |
| TCONS_00065339-exon-scaffold_439-1510915933:111763..112752 | TCONS_00065339-exon-scaffold_439-1510915933:111763..112752 | Clytia hemisphaerica | exon |
| TCONS_00065339-exon-scaffold_439-1575043694:111763..112752 | TCONS_00065339-exon-scaffold_439-1575043694:111763..112752 | Clytia hemisphaerica | exon |
| TCONS_00065339-exon-scaffold_439-1491911889:113176..116371 | TCONS_00065339-exon-scaffold_439-1491911889:113176..116371 | Clytia hemisphaerica | exon |
| TCONS_00065339-exon-scaffold_439-1510915933:113176..116371 | TCONS_00065339-exon-scaffold_439-1510915933:113176..116371 | Clytia hemisphaerica | exon |
| TCONS_00065339-exon-scaffold_439-1575043694:113176..116371 | TCONS_00065339-exon-scaffold_439-1575043694:113176..116371 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_439 | supercontig | scaffold_439:111763..116371 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020683 | Ankyrin_rpt-contain_dom |
Blast
The following BLAST results are available for this feature:
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