|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065328 ID=TCONS_00065328|Name=TCONS_00065328|organism=Clytia hemisphaerica|type=transcript|length=950bp
ATTAAAGTCCCTGGAACACTTGTTTACCCAGCGGTGATTAAAGATATTGA
CGCATCAAAAGCCAGCGACGTTTTCGTACCTCCCTCTGTCTTCATTCAAC
CGTCTTCATCATCAGCAACGTCTCTTGATCCAACCACGACGACAACAAGT
ATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGTCTTC
ATCATTAGCAACGTCTCTTGATCCAACCACGACGACAACAAGTATTACCA
GCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGTCCTCATCATTG
GCCACGTATTTTAATTATACAATTATACCAACAACTTCGTTCCGTAATAC
AACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCCCCGGTTATCG
CAGGGGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGGCAGCTCTC
TTCTACGTTCTGAGAAAAAATCCTTCCAGACGATCAATTGGTATTGGATG
AAACCCATTCAACCTCATCTTCAATAACAAATAAGAGCCTCTCTTCCGCT
CATGAAGTCGAAAACGACGCTGATGAGAAAAAAGAGCCAGTACAAACAGA
TTATGTGATGGAGTTTAAAGGAGTTGACGAATATGATTGAGTGCTTATAA
TACTGGTGCATTGGAGCGATGTCATGATTATATGACGTCGAGGATTCAGA
CCGACGTTAATGCAGTtcactctcgctaattcgaactggAACAGggaaat
cttatttgttcgaataacagagagtttcgaatcatagaaagcattttaag
agggtttctccctGACGGAAATTGActtatagaaagattcaaataatggG
AGTACGAATAAGCGAGAGCTTATACTCTAGTCTCCATTTGGAAAGAATGT
TTATTTGTGAACATTTATAAAACTCTTTTTGGACACGTCTCAATGAAGTC Run BLAST on NCBI protein sequence of TCONS_00065328-protein >TCONS_00065328-protein ID=TCONS_00065328-protein|Name=TCONS_00065328-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
IKVPGTLVYPAVIKDIDASKASDVFVPPSVFIQPSSSSATSLDPTTTTTS
ITSDVFVPPSVFIQPSSSLATSLDPTTTTTSITSDVFVPPSVFIQPSSSL
ATYFNYTIIPTTSFRNTTSPTEEPPVVNNAPVIAGVTTSLAFLLVFSAAL
FYVLRKNPSRRSIGIG Run BLAST on NCBI transcript from alignment at scaffold_437:75484..77365- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065328 ID=TCONS_00065328|Name=TCONS_00065328|organism=Clytia hemisphaerica|type=transcript|length=1882bp|location=Sequence derived from alignment at scaffold_437:75484..77365- (Clytia hemisphaerica)
ATTAAAGTCCCTGGAACACTTGTTTGTGAGTAAAACCTCCGTGGACTTTT
TCCTTATTTATAATTTCTCAATCAGTACTGCGTTTCAATTTTGTTCTAAA
GCAACCGTATTGCAGTTGTAGAGCATCCGGCTACGGTGCGCAAGGTTGTG
GGTTTAACCCCCAGCCGGGTCATACCAAAGATTCCCAAAATGGGACTTGA
CGCCTCTCTGCTCTGATGCTCAGCAATTAAGAGAAGGATCAAGTGTAAGT
GGAGCAATCCTGGGAGATCGAAAAAGGAATCTTCAGGTCGCCCGCGACTG
CGATTGCAGACTTACTTAACTATAGTTCTAGAATCAAATTCTAACGTATT
GACTCTGCATAAACCACACACTTTAAAAGGCTTATATAATGGTTACCTCT
CGCTAGATGATGGTTTTCCAATTTCGAATGGCTGGTCAAAAGACACTTAC
TGTAGTCACTCATTTACTCTCACTAACAGACCCAGCGGTGATTAAAGATA
TTGACGCATCAAAAGCCAGCGACGTTTTCGTACCTCCCTCTGTCTTCATT
CAACCGTCTTCATCATCAGCAACGTCTCTTGATCCAACCACGACGACAAC
AAGTATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGT
CTTCATCATTAGCAACGTCTCTTGATCCAACCACGACGACAACAAGTATT
ACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGTCCTCATC
ATTGGCCACGTATTTTAATTATACAATTATACCAACAACTTCGTTCCGTA
ATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCCCCGGTT
ATCGCAGGGGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGGCAGC
TCTCTTCTACGTTCTGAGAAAAAAGTAAGTATCAGGACGTTACTGTTATC
AAATTAGTAGATACTCCAATATTGATGAAACATAGCTATAGAAAGCTAGA
CTTCTCAATGTCAAAAAGGCTAAATGTTCAGGTGACTCAATTTTGGTCAC
CTCCTCATAATCCTAATCAAAATCTTTGTTATTTCTTTTCAGGTTAAAGA
AGAGACAGACCGGTGAGTAATTTTTTCATTTATAAATACATATAAGTCAC
AAACTGTTTATGGTCTTACACGATTTCCAAATGGTGCATATCACGTCTAT
CTGTTTCTGCTTCATAGTCTTATGTTCCTATCATGTTGTAAAGTGTTTGT
AGCCTTACCCTTCCCACTATCACAGTCCTTCCAGACGATCTTTTTTATCG
CCTCAAGAAGAAAAAAAACTTTTTATTCTACAAATTGTAGTTTCATGCCA
CATCTTTAGGCAACAAAAAGCTTCTTATAATCTATCGTTTTATGCTTCAT
AGTCCTTCCAGACGATCAATTGGTATTGGATGAAACCCATTCAACCTCAT
CTTCAATAACAAATAAGAGCCTCTCTTCCGCTCATGAAGTCGAAAACGAC
GCTGATGAGAAAAAAGAGCCAGTACAAACAGATTATGTGATGGAGTTTAA
AGGAGTTGACGAATATGATTGAGTGCTTATAATACTGGTGCATTGGAGCG
ATGTCATGATTATATGACGTCGAGGATTCAGACCGACGTTAATGCAGTTC
ACTCTCGCTAATTCGAACTGGAACAGGGAAATCTTATTTGTTCGAATAAC
AGAGAGTTTCGAATCATAGAAAGCATTTTAAGAGGGTTTCTCCCTGACGG
AAATTGACTTATAGAAAGATTCAAATAATGGGAGTACGAATAAGCGAGAG
CTTATACTCTAGTCTCCATTTGGAAAGAATGTTTATTTGTGAACATTTAT
AAAACTCTTTTTGGACACGTCTCAATGAAGTC Coding sequence (CDS) from alignment at scaffold_437:75484..77365- >TCONS_00065328 ID=TCONS_00065328|Name=TCONS_00065328|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_437:75484..77365- (Clytia hemisphaerica)
TCCTTCCAGACGATCAATTGGTATTGGATGAACCCAGCGGTGATTAAAGA
TATTGACGCATCAAAAGCCAGCGACGTTTTCGTACCTCCCTCTGTCTTCA
TTCAACCGTCTTCATCATCAGCAACGTCTCTTGATCCAACCACGACGACA
ACAAGTATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCC
GTCTTCATCATTAGCAACGTCTCTTGATCCAACCACGACGACAACAAGTA
TTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGTCCTCA
TCATTGGCCACGTATTTTAATTATACAATTATACCAACAACTTCGTTCCG
TAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCCCCGG
TTATCGCAGGGGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGGCA
GCTCTCTTCTACGTTCTGAGAAAAAAATTAAAGTCCCTGGAACACTTGTT
TTCCTTCCAGACGATCAATTGGTATTGGATGAACCCAGCGGTGATTAAAG
ATATTGACGCATCAAAAGCCAGCGACGTTTTCGTACCTCCCTCTGTCTTC
ATTCAACCGTCTTCATCATCAGCAACGTCTCTTGATCCAACCACGACGAC
AACAAGTATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGC
CGTCTTCATCATTAGCAACGTCTCTTGATCCAACCACGACGACAACAAGT
ATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGTCCTC
ATCATTGGCCACGTATTTTAATTATACAATTATACCAACAACTTCGTTCC
GTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCCCCG
GTTATCGCAGGGGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGGC
AGCTCTCTTCTACGTTCTGAGAAAAAAATTAAAGTCCCTGGAACACTTGT
TTTCCTTCCAGACGATCAATTGGTATTGGATGAACCCAGCGGTGATTAAA
GATATTGACGCATCAAAAGCCAGCGACGTTTTCGTACCTCCCTCTGTCTT
CATTCAACCGTCTTCATCATCAGCAACGTCTCTTGATCCAACCACGACGA
CAACAAGTATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAG
CCGTCTTCATCATTAGCAACGTCTCTTGATCCAACCACGACGACAACAAG
TATTACCAGCGACGTTTTCGTACCTCCCTCCGTTTTCATTCAGCCGTCCT
CATCATTGGCCACGTATTTTAATTATACAATTATACCAACAACTTCGTTC
CGTAATACAACCAGTCCGACAGAAGAACCACCCGTAGTGAATAATGCCCC
GGTTATCGCAGGGGTCACGACTTCGTTAGCTTTCTTGTTGGTATTTTCGG
CAGCTCTCTTCTACGTTCTGAGAAAAAAATTAAAGTCCCTGGAACACTTG
TTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065328-exon-scaffold_437-1575043694:77341..77365 | TCONS_00065328-exon-scaffold_437-1575043694:77341..77365 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1575043694:76442..76886 | TCONS_00065328-exon-scaffold_437-1575043694:76442..76886 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1575043694:75484..75963 | TCONS_00065328-exon-scaffold_437-1575043694:75484..75963 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1510915933:77341..77365 | TCONS_00065328-exon-scaffold_437-1510915933:77341..77365 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1510915933:76442..76886 | TCONS_00065328-exon-scaffold_437-1510915933:76442..76886 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1510915933:75484..75963 | TCONS_00065328-exon-scaffold_437-1510915933:75484..75963 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1491911889:77341..77365 | TCONS_00065328-exon-scaffold_437-1491911889:77341..77365 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1491911889:76442..76886 | TCONS_00065328-exon-scaffold_437-1491911889:76442..76886 | Clytia hemisphaerica | exon |
| TCONS_00065328-exon-scaffold_437-1491911889:75484..75963 | TCONS_00065328-exon-scaffold_437-1491911889:75484..75963 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_437 | supercontig | scaffold_437:75484..77365 - |
Blast
The following BLAST results are available for this feature:
|
