TCONS_00065311 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065311
Unique NameTCONS_00065311
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065311 ID=TCONS_00065311|Name=TCONS_00065311|organism=Clytia hemisphaerica|type=transcript|length=224bp
TGATGAAAAAATAGTTGCCCAACCCGACATACTTTGTGGTGTGTTTGAAC
GTAATCCATCATTGAAGAAAATCCTATAGTGATGTCCAAATTAAAGTAGT
AATACGTCTAAATATCTCGTCCAAGAAAGAAAGTAGTAATATGTCTAAAT
ATCTCGTCCAAGAAACCTATCAATCCTTAAAGCGTGAGAGACTGGGTTCG
GGTTTACCAGGAAAGAATAATAGT
Run BLAST on NCBI

transcript from alignment at scaffold_435:129181..129404

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065311 ID=TCONS_00065311|Name=TCONS_00065311|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at scaffold_435:129181..129404 (Clytia hemisphaerica)
ACTATTATTCTTTCCTGGTAAACCCGAACCCAGTCTCTCACGCTTTAAGG
ATTGATAGGTTTCTTGGACGAGATATTTAGACATATTACTACTTTCTTTC
TTGGACGAGATATTTAGACGTATTACTACTTTAATTTGGACATCACTATA
GGATTTTCTTCAATGATGGATTACGTTCAAACACACCACAAAGTATGTCG
GGTTGGGCAACTATTTTTTCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040948XLOC_040948Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065311-exon-scaffold_435-1491911889:129181..129404TCONS_00065311-exon-scaffold_435-1491911889:129181..129404Clytia hemisphaericaexon
TCONS_00065311-exon-scaffold_435-1510915933:129181..129404TCONS_00065311-exon-scaffold_435-1510915933:129181..129404Clytia hemisphaericaexon
TCONS_00065311-exon-scaffold_435-1575043694:129181..129404TCONS_00065311-exon-scaffold_435-1575043694:129181..129404Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:129181..129404 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	6.19108	0	2.79706	5.87486	12.1283	2.3544	3.86922	11.5915	5.6177	14.5153	12.0369	6.97811	16.0927	34.5847	20.6802	5.61714	0	2.66451	3.63364	0	0	0	1.70036	3.86898	5.25584
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00065311 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top