TCONS_00065307 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065307
Unique NameTCONS_00065307
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length964

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065307 ID=TCONS_00065307|Name=TCONS_00065307|organism=Clytia hemisphaerica|type=transcript|length=964bp
TTGGCGTTGGTGAGAGGAGATCATCTGAATTTGAGGTCGATTAACTGTTC
ACAATTGATACCACGGCATGTCGCCCTTGATGGGCGTGTCATTAAACCGT
AATTCTGTTCACACGTAAAATACCGGCGCCCTTCAACTGACCCGTCGTTC
TTCCCGTAAGGCTTTCTCAATTCAACGCCCAACCAAACGCCTTTGGCGAA
TTCAACACGTCCAATGAATCTAACTAAACCAAGTTGTCCATTAAGATAAA
CACTCATCCCCGTCTTTAAAGTGAAGTTAATTTGAGCGCCCAAGGTTCGG
TCAAGTTTTTGGTGATTTCTCTTCGGTTGGCTGAGCTGTTGAATGTTTGC
ACTAACACCAGGATTGATCCTGGAGTGTTTAcgtttttcatttgattttt
gttcACTCTCTTCAAGTGAGTCTCGGTCGTTCTCCTCTTCAATGTCTTCT
TGAGGTGTAATGGACTTCAAATCtaatttcaagaatattttctttttctc
tccaTCTCCCTCAATCCGCTTcttcatttgaaattttttgatggtGTTCG
GTATTTCGATTGAACTACATTCTTCCTCGATAACCTCCTCTATCCTTTGT
ATCTGAGGAAGTGGAGCGAATATACCACGATCAGGCTCACATCGAAAGTA
ACGAAAGTCTCCTACCGAGCCATCATTTTTCCCAACGGGATCTTCAAGTT
CAACGCCAACCCAAGTACCCGGGGAGAACTTTGTTGGTCCACGGTATCGA
ACAAATCCGGTCTTCTGACCGGCAACAATGACCTTTTCTCCAAGCGTCAA
ACCAAACATTGCAACATTATCGAAGGATGCAGATGTGTTCGCAGGTACTG
GTGACGCGGGAGGAGAAGGAGAGACTAGTAAATAGTCTACATCAAATTTC
TTGACTAGCGTTAACGGCGTAAAAATACCATGGTTCGGTTTACATTGGAA
GTATTGCACCCCAG
Run BLAST on NCBI

protein sequence of TCONS_00065307-protein

>TCONS_00065307-protein ID=TCONS_00065307-protein|Name=TCONS_00065307-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
GVQYFQCKPNHGIFTPLTLVKKFDVDYLLVSPSPPASPVPANTSASFDNV
AMFGLTLGEKVIVAGQKTGFVRYRGPTKFSPGTWVGVELEDPVGKNDGSV
GDFRYFRCEPDRGIFAPLPQIQRIEEVIEEECSSIEIPNTIKKFQMKKRI
EGDGEKKKIFLKLDLKSITPQEDIEEENDRDSLEESEQKSNEKRKHSRIN
PGVSANIQQLSQPKRNHQKLDRTLGAQINFTLKTGMSVYLNGQLGLVRFI
GRVEFAKGVWLGVELRKPYGKNDGSVEGRRYFTCEQNYGLMTRPSRATCR
GINCEQLIDLKFR
Run BLAST on NCBI

transcript from alignment at scaffold_435:55482..56445

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065307 ID=TCONS_00065307|Name=TCONS_00065307|organism=Clytia hemisphaerica|type=transcript|length=964bp|location=Sequence derived from alignment at scaffold_435:55482..56445 (Clytia hemisphaerica)
CTGGGGTGCAATACTTCCAATGTAAACCGAACCATGGTATTTTTACGCCG
TTAACGCTAGTCAAGAAATTTGATGTAGACTATTTACTAGTCTCTCCTTC
TCCTCCCGCGTCACCAGTACCTGCGAACACATCTGCATCCTTCGATAATG
TTGCAATGTTTGGTTTGACGCTTGGAGAAAAGGTCATTGTTGCCGGTCAG
AAGACCGGATTTGTTCGATACCGTGGACCAACAAAGTTCTCCCCGGGTAC
TTGGGTTGGCGTTGAACTTGAAGATCCCGTTGGGAAAAATGATGGCTCGG
TAGGAGACTTTCGTTACTTTCGATGTGAGCCTGATCGTGGTATATTCGCT
CCACTTCCTCAGATACAAAGGATAGAGGAGGTTATCGAGGAAGAATGTAG
TTCAATCGAAATACCGAACaccatcaaaaaatttcaaatgaagAAGCGGA
TTGAGGGAGAtggagagaaaaagaaaatattcttgaaattaGATTTGAAG
TCCATTACACCTCAAGAAGACATTGAAGAGGAGAACGACCGAGACTCACT
TGAAGAGAGTgaacaaaaatcaaatgaaaaacgTAAACACTCCAGGATCA
ATCCTGGTGTTAGTGCAAACATTCAACAGCTCAGCCAACCGAAGAGAAAT
CACCAAAAACTTGACCGAACCTTGGGCGCTCAAATTAACTTCACTTTAAA
GACGGGGATGAGTGTTTATCTTAATGGACAACTTGGTTTAGTTAGATTCA
TTGGACGTGTTGAATTCGCCAAAGGCGTTTGGTTGGGCGTTGAATTGAGA
AAGCCTTACGGGAAGAACGACGGGTCAGTTGAAGGGCGCCGGTATTTTAC
GTGTGAACAGAATTACGGTTTAATGACACGCCCATCAAGGGCGACATGCC
GTGGTATCAATTGTGAACAGTTAATCGACCTCAAATTCAGATGATCTCCT
CTCACCAACGCCAA

Coding sequence (CDS) from alignment at scaffold_435:55482..56445

>TCONS_00065307 ID=TCONS_00065307|Name=TCONS_00065307|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_435:55482..56445 (Clytia hemisphaerica)
GGGGTGCAATACTTCCAATGTAAACCGAACCATGGTATTTTTACGCCGTT
AACGCTAGTCAAGAAATTTGATGTAGACTATTTACTAGTCTCTCCTTCTC
CTCCCGCGTCACCAGTACCTGCGAACACATCTGCATCCTTCGATAATGTT
GCAATGTTTGGTTTGACGCTTGGAGAAAAGGTCATTGTTGCCGGTCAGAA
GACCGGATTTGTTCGATACCGTGGACCAACAAAGTTCTCCCCGGGTACTT
GGGTTGGCGTTGAACTTGAAGATCCCGTTGGGAAAAATGATGGCTCGGTA
GGAGACTTTCGTTACTTTCGATGTGAGCCTGATCGTGGTATATTCGCTCC
ACTTCCTCAGATACAAAGGATAGAGGAGGTTATCGAGGAAGAATGTAGTT
CAATCGAAATACCGAACaccatcaaaaaatttcaaatgaagAAGCGGATT
GAGGGAGAtggagagaaaaagaaaatattcttgaaattaGATTTGAAGTC
CATTACACCTCAAGAAGACATTGAAGAGGAGAACGACCGAGACTCACTTG
AAGAGAGTgaacaaaaatcaaatgaaaaacgTAAACACTCCAGGATCAAT
CCTGGTGTTAGTGCAAACATTCAACAGCTCAGCCAACCGAAGAGAAATCA
CCAAAAACTTGACCGAACCTTGGGCGCTCAAATTAACTTCACTTTAAAGA
CGGGGATGAGTGTTTATCTTAATGGACAACTTGGTTTAGTTAGATTCATT
GGACGTGTTGAATTCGCCAAAGGCGTTTGGTTGGGCGTTGAATTGAGAAA
GCCTTACGGGAAGAACGACGGGTCAGTTGAAGGGCGCCGGTATTTTACGT
GTGAACAGAATTACGGTTTAATGACACGCCCATCAAGGGCGACATGCCGT
GGTATCAATTGTGAACAGTTAATCGACCTCAAATTCAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040944XLOC_040944Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065307-proteinTCONS_00065307-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065307-exon-scaffold_435-1491911889:55482..56445TCONS_00065307-exon-scaffold_435-1491911889:55482..56445Clytia hemisphaericaexon
TCONS_00065307-exon-scaffold_435-1510915933:55482..56445TCONS_00065307-exon-scaffold_435-1510915933:55482..56445Clytia hemisphaericaexon
TCONS_00065307-exon-scaffold_435-1575043694:55482..56445TCONS_00065307-exon-scaffold_435-1575043694:55482..56445Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:55482..56445 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0532049	0	0.126738	0.10015	3.44357	4.12877	0.791958	1.07906	2.18995	1.09534	5.40657	4.41393	3.65553	9.16308	4.62109	4.01334	0.0999036	0	1.27212	1.13019	1.88574	1.86136	3.98567	4.23252	0.644331	0.0687648	0.104311	0.0531384
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000938CAP-Gly_domain
Blast
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BLAST of TCONS_00065307 vs. Swiss-Prot (Human)
Match: CLIP4 (CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.629e-44
Identity = 92/255 (36.08%), Postives = 139/255 (54.51%), Query Frame = -3 
Query:   36 LTLGEKVIVAGQKTGFVRYRGPTKFSPGTWVGVELEDPVGKNDGSVGDFRYFRCEPDRGIFAPLPQIQRXXXXXXXXXXXXXIPNTIKKFQMKKRIEGDGEKKKIFLKLDLKSITPQEDIEEENDRDSLEESEQKSNEKRKHSRINPGVSANIQQLSQPKRNHQKLDRTLGAQINFTLKTGMSVYLNGQLGLVRFIGRVEFAKGVWLGVELRKPYGKNDGSVEGRRYFTCEQNYGLMTRPSRATCRGINCEQLID 800
            L LGE+V+V GQ+ G +R+ G T F+PG W G+ELE P GKNDGSVG  +YF C P  GIFAP  ++QR+ + +          +T+ +    K+       ++ F      S T     +E N R++  +S+         +    G+  +++        H+      G+Q+  T         + ++G VR++G  +FA G+WLG+ELR   GKNDGSV  +RYFTC+ N+G++ RPSR T RGIN  +L+D
Sbjct:  485 LRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSRVQRVTDSL----------DTLSEISSNKQNHSYPGFRRSF------STTSASSQKEINRRNAFSKSKAALRRSWSSTPTAGGIEGSVKL-------HE------GSQVLLTS--------SNEMGTVRYVGPTDFASGIWLGLELRSAKGKNDGSVGDKRYFTCKPNHGVLVRPSRVTYRGINGSKLVD 702

HSP 2 Score: 144.821 bits (364), Expect = 2.967e-38
Identity = 89/270 (32.96%), Postives = 135/270 (50.00%), Query Frame = -3 
Query:   75 FGLTLGEKVIVAGQKTGFVRYRGPTKFSPGTWVGVELEDPVGKNDGSVGDFRYFRCEPDRGIFAPLPQIQRXXXXXXXXXXXXXIPNTIKKFQMK---------KRIEGDGEKKKIFLKLDLKSITPQEDIEEENDRD-----------SLEESEQKSNEKRKHSRINPGVSANIQQLSQPKRNHQKLDRTLGAQINFT-----LKTGMSVYLNGQ-LGLVRFIGRVEFAKGVWLGVELRKPYGKNDGSVEGRRYFTCEQNYGLMTRPSR 806
             GL LG++V++AGQK G +R+ G T+F+ G W G+EL++P GKN+GSVG  +YF+C P  GIFAPL +I + +   +    +      +   + +         K   G    KK        S+ P E+++   ++D           S    E + +  +K + I+       +  S   R    L+ +  +  N +     L+ G  V + GQ LG +RF G   FA G W G+EL KP+GKNDGSV G +YF+C   YG+   PSR
Sbjct:  281 LGLKLGDRVVIAGQKVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGKVQYFKCAPKYGIFAPLSKISKAKGRRKNITHTPSTKAAVPLIRSQKIDVAHVTSKVNTGLMTSKKDSASESTLSLPPGEELKTVTEKDVALLGSVSSCSSTSSLEHRQSYPKKQNAISSNKKTMSKSPSLSSRASAGLNSSATSTANNSRCEGELRLGERVLVVGQRLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPPSR 550
The following BLAST results are available for this feature:
BLAST of TCONS_00065307 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLIP42.629e-4436.08CAP-Gly domain-containing linker protein 4 OS=Homo... [more]
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