TCONS_00065306 (transcript) - C. hemisphaerica

Overview
NameTCONS_00065306
Unique NameTCONS_00065306
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length727

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00065306 ID=TCONS_00065306|Name=TCONS_00065306|organism=Clytia hemisphaerica|type=transcript|length=727bp
ACAGTCAGTTCATCTCTCATGAGTGAAGCGATCTTCTttacatcttcatt
ttcaatttcgtcTTCATTGGGTATGTAATCAATCGGTTTCTTCCCACTTT
CATCCACAAAATGAGGATTGGAACTGTTCTCAAGTAGCAATGAAACAGAT
TTGAAGCTCAGATTCTGACACCCAATATGCAAAACACTTCCACCATTATA
CTCCTTACAAGGTCTGTCCAAATCATTAAACGACTCGTTGTCAAGGATGA
CTTTCACAACAGAGTAAGCATCAAAGAATACTGCATAATGCAAAGCTGAC
ATATCTGTCCATTGACATTTTGCATTGATCAGAATCCCTTTATTGATCAA
AGAACTGGTCAGTTCAGCTGTCCTTTGAGGATCAGACATTCCATCAGCTC
CTGCTTTCGCAACGTAATGCAACAGAGTCATGTCGGTCAGGTTATCTCGA
TCGTTTATATTTAAACCTCTTTTGAGGATTTCTGTGACGAGTAGATCCAT
ATTTTTCTGTACTTGTGGAACCCATTGTCGTATGATGGCAAACAATTGAG
CAATGCTCGTTTTAGGATCGATTATCAATCTATAACATCCTTTACAATTC
GGATCCAGAAATGCAAGATTCAAGTTTTCACATTGTTTACATAGAGGTGC
ATCGACTGCATCGTGATTGCTCCAGGGTTCTTTGATTGGGGAGACAGGAG
ACGAATCATTAAGCCACGTCGTCTCAT
Run BLAST on NCBI

protein sequence of TCONS_00065306-protein

>TCONS_00065306-protein ID=TCONS_00065306-protein|Name=TCONS_00065306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
ETTWLNDSSPVSPIKEPWSNHDAVDAPLCKQCENLNLAFLDPNCKGCYRL
IIDPKTSIAQLFAIIRQWVPQVQKNMDLLVTEILKRGLNINDRDNLTDMT
LLHYVAKAGADGMSDPQRTAELTSSLINKGILINAKCQWTDMSALHYAVF
FDAYSVVKVILDNESFNDLDRPCKEYNGGSVLHIGCQNLSFKSVSLLLEN
SSNPHFVDESGKKPIDYIPNEDEIENEDVKKIASLMRDELT
Run BLAST on NCBI

transcript from alignment at scaffold_435:54552..55278

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00065306 ID=TCONS_00065306|Name=TCONS_00065306|organism=Clytia hemisphaerica|type=transcript|length=727bp|location=Sequence derived from alignment at scaffold_435:54552..55278 (Clytia hemisphaerica)
ATGAGACGACGTGGCTTAATGATTCGTCTCCTGTCTCCCCAATCAAAGAA
CCCTGGAGCAATCACGATGCAGTCGATGCACCTCTATGTAAACAATGTGA
AAACTTGAATCTTGCATTTCTGGATCCGAATTGTAAAGGATGTTATAGAT
TGATAATCGATCCTAAAACGAGCATTGCTCAATTGTTTGCCATCATACGA
CAATGGGTTCCACAAGTACAGAAAAATATGGATCTACTCGTCACAGAAAT
CCTCAAAAGAGGTTTAAATATAAACGATCGAGATAACCTGACCGACATGA
CTCTGTTGCATTACGTTGCGAAAGCAGGAGCTGATGGAATGTCTGATCCT
CAAAGGACAGCTGAACTGACCAGTTCTTTGATCAATAAAGGGATTCTGAT
CAATGCAAAATGTCAATGGACAGATATGTCAGCTTTGCATTATGCAGTAT
TCTTTGATGCTTACTCTGTTGTGAAAGTCATCCTTGACAACGAGTCGTTT
AATGATTTGGACAGACCTTGTAAGGAGTATAATGGTGGAAGTGTTTTGCA
TATTGGGTGTCAGAATCTGAGCTTCAAATCTGTTTCATTGCTACTTGAGA
ACAGTTCCAATCCTCATTTTGTGGATGAAAGTGGGAAGAAACCGATTGAT
TACATACCCAATGAAgacgaaattgaaaatgaagatgtaaAGAAGATCGC
TTCACTCATGAGAGATGAACTGACTGT

Coding sequence (CDS) from alignment at scaffold_435:54552..55278

>TCONS_00065306 ID=TCONS_00065306|Name=TCONS_00065306|organism=Clytia hemisphaerica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_435:54552..55278 (Clytia hemisphaerica)
GAGACGACGTGGCTTAATGATTCGTCTCCTGTCTCCCCAATCAAAGAACC
CTGGAGCAATCACGATGCAGTCGATGCACCTCTATGTAAACAATGTGAAA
ACTTGAATCTTGCATTTCTGGATCCGAATTGTAAAGGATGTTATAGATTG
ATAATCGATCCTAAAACGAGCATTGCTCAATTGTTTGCCATCATACGACA
ATGGGTTCCACAAGTACAGAAAAATATGGATCTACTCGTCACAGAAATCC
TCAAAAGAGGTTTAAATATAAACGATCGAGATAACCTGACCGACATGACT
CTGTTGCATTACGTTGCGAAAGCAGGAGCTGATGGAATGTCTGATCCTCA
AAGGACAGCTGAACTGACCAGTTCTTTGATCAATAAAGGGATTCTGATCA
ATGCAAAATGTCAATGGACAGATATGTCAGCTTTGCATTATGCAGTATTC
TTTGATGCTTACTCTGTTGTGAAAGTCATCCTTGACAACGAGTCGTTTAA
TGATTTGGACAGACCTTGTAAGGAGTATAATGGTGGAAGTGTTTTGCATA
TTGGGTGTCAGAATCTGAGCTTCAAATCTGTTTCATTGCTACTTGAGAAC
AGTTCCAATCCTCATTTTGTGGATGAAAGTGGGAAGAAACCGATTGATTA
CATACCCAATGAAgacgaaattgaaaatgaagatgtaaAGAAGATCGCTT
CACTCATGAGAGATGAACTGACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_040943XLOC_040943Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065306-proteinTCONS_00065306-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00065306-exon-scaffold_435-1491911889:54552..55278TCONS_00065306-exon-scaffold_435-1491911889:54552..55278Clytia hemisphaericaexon
TCONS_00065306-exon-scaffold_435-1510915933:54552..55278TCONS_00065306-exon-scaffold_435-1510915933:54552..55278Clytia hemisphaericaexon
TCONS_00065306-exon-scaffold_435-1575043694:54552..55278TCONS_00065306-exon-scaffold_435-1575043694:54552..55278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:54552..55278 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0684899	0.0667884	0.155095	0	0.0923624	0	3.16996	2.22576	1.26973	1.3583	1.80412	0.456139	4.46394	3.83167	3.18905	8.63931	3.39339	4.11051	0	0	0.860858	0.775194	1.57058	2.07044	2.27957	4.33143	0.28174	0.200453	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00065306 vs. Swiss-Prot (Human)
Match: CLIP4 (CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.171e-59
Identity = 91/195 (46.67%), Postives = 130/195 (66.67%), Query Frame = -3 
Query:   66 APLCKQCENLNLAFLDPNCKGCYRLIIDPKTSIAQLFAIIRQWVPQVQKNMDLLVTEILKRGLNINDRDNLTDMTLLHYVAKAGADGMSDPQRTAELTSSLINKGILINAKCQWTDMSALHYAVFFDAYSVVKVILDNESFNDLDRPCKEYNGGSVLHIGCQNLSFKSVSLLLENSSNPHFVDESGKKPIDYIPN 650
            AP+   CE    +F DPN   C  ++ DPKTS+++LFAI+RQWVPQVQ+N+D++  EILKRG N+NDRD LTDMTLLHY  K+GA G+ D +   +  + LI+ G  I+ + +WT+M+ALHYA +FD   +++VIL      D+D  C ++N G+ LHI   NL   +V  LLE  +NP F ++ G+ P D +P+
Sbjct:   38 APMPSDCE---FSFFDPNDASCQEILFDPKTSVSELFAILRQWVPQVQQNIDIIGNEILKRGCNVNDRDGLTDMTLLHYTCKSGAHGIGDVETAVKFATQLIDLGADISLRSRWTNMNALHYAAYFDVPELIRVILKTSKPKDVDATCSDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPADVVPD 229
The following BLAST results are available for this feature:
BLAST of TCONS_00065306 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLIP42.171e-5946.67CAP-Gly domain-containing linker protein 4 OS=Homo... [more]
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