TCONS_00065306-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00065306-protein
Unique NameTCONS_00065306-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length241

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00065306-protein ID=TCONS_00065306-protein|Name=TCONS_00065306-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
ETTWLNDSSPVSPIKEPWSNHDAVDAPLCKQCENLNLAFLDPNCKGCYRL
IIDPKTSIAQLFAIIRQWVPQVQKNMDLLVTEILKRGLNINDRDNLTDMT
LLHYVAKAGADGMSDPQRTAELTSSLINKGILINAKCQWTDMSALHYAVF
FDAYSVVKVILDNESFNDLDRPCKEYNGGSVLHIGCQNLSFKSVSLLLEN
SSNPHFVDESGKKPIDYIPNEDEIENEDVKKIASLMRDELT
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_040943XLOC_040943Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00065306TCONS_00065306Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 177..206
e-value: 250.0
score: 9.5
coord: 140..171
e-value: 4.6
score: 16.2
coord: 97..135
e-value: 700.0
score: 6.2
NoneNo IPR availablePFAMPF13637Ank_4coord: 142..198
e-value: 4.5E-5
score: 23.8
NoneNo IPR availableCDDcd00204ANKcoord: 91..217
e-value: 1.50051E-12
score: 60.475
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 54..151
e-value: 1.6E-9
score: 37.0
IPR020683Ankyrin repeat-containing domainGENE3D1.25.40.20coord: 152..226
e-value: 4.0E-9
score: 35.8
IPR020683Ankyrin repeat-containing domainPROSITEPS50297ANK_REP_REGIONcoord: 75..215
score: 16.918
IPR020683Ankyrin repeat-containing domainSUPERFAMILY48403Ankyrin repeatcoord: 80..217

Blast
[Close]
BLAST of TCONS_00065306-protein vs. Swiss-Prot (Human)
Match: CLIP4 (CAP-Gly domain-containing linker protein 4 OS=Homo sapiens GN=CLIP4 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 2.442e-60
Identity = 91/195 (46.67%), Postives = 130/195 (66.67%), Query Frame = 0 
Query:   26 APLCKQCENLNLAFLDPNCKGCYRLIIDPKTSIAQLFAIIRQWVPQVQKNMDLLVTEILKRGLNINDRDNLTDMTLLHYVAKAGADGMSDPQRTAELTSSLINKGILINAKCQWTDMSALHYAVFFDAYSVVKVILDNESFNDLDRPCKEYNGGSVLHIGCQNLSFKSVSLLLENSSNPHFVDESGKKPIDYIPN 220
            AP+   CE    +F DPN   C  ++ DPKTS+++LFAI+RQWVPQVQ+N+D++  EILKRG N+NDRD LTDMTLLHY  K+GA G+ D +   +  + LI+ G  I+ + +WT+M+ALHYA +FD   +++VIL      D+D  C ++N G+ LHI   NL   +V  LLE  +NP F ++ G+ P D +P+
Sbjct:   38 APMPSDCE---FSFFDPNDASCQEILFDPKTSVSELFAILRQWVPQVQQNIDIIGNEILKRGCNVNDRDGLTDMTLLHYTCKSGAHGIGDVETAVKFATQLIDLGADISLRSRWTNMNALHYAAYFDVPELIRVILKTSKPKDVDATCSDFNFGTALHIAAYNLCAGAVKCLLEQGANPAFRNDKGQIPADVVPD 229
The following BLAST results are available for this feature:
BLAST of TCONS_00065306-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CLIP42.442e-6046.67CAP-Gly domain-containing linker protein 4 OS=Homo... [more]
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