|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065268 ID=TCONS_00065268|Name=TCONS_00065268|organism=Clytia hemisphaerica|type=transcript|length=2021bp
GTTCGTCAatagaaacaaatttttatgatGTTGCTTGACAAAAGGGCGAC
ATACGATAAGACGAAGACGTACACACTTGATGAACTGATGGAGATGTCAA
ACTTGGAACCAGCTGGTCATCATGCTAAACCAAATCACATCAAACGACCG
ATGAACTCGTTCATGGTTTGGTCGAGAATGGAACgcaagcgtatcagtga
agaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTTGGTGCTT
CATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGAAGAGGCC
AAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATAAGTATCG
TCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCATGTTCGTA
AACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTATTCCTGAA
TATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTGTGTATTA
CCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAAGGCCATC
CTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCGCCCTCGA
AGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTGATAGAGA
GTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCACCTCCTC
AACCTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTAAACAGAAT
AGTTACCATGACGATGAGCCATCCGACGGCGAAAATAAAACTGACACAAA
CACTGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTCGTCTGGCG
AAAATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAACGACTGTA
ACGAAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTGAAATTACG
AAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAAAGAGAAGA
ATGAACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCGAATCTCGT
AACAGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTATACGTCGCC
GCCTCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTCCTATATGG
TACCCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAGAGATCTGT
TACAAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCACACCACCC
TCATGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAAAACAAGAT
GCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTTATGTTGTA
TATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATGGTAGCTGC
CAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAGGGAGAAGA
CTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAGACACTGGA
AATGAAACAGACTAAATAAAAGTTTCAGAGATTTCCTCCTTTCCATCAAC
AATTTGGTCGCGATAAACTCTCTTTCctttttttgtatatatttacTGCA
TTTGTGTTTTTCCTCATTTACCTTACCACAAAAACcgataattttttcct
gcttttGTTTATATTCAAGATTTCGTTGTTAAAAGATTCACATGATATAG
AAACAGCGTTTTTTCACCCTACAGATTTTCATATTTGCCTTTTAGAATTC
ACTATTTGTCTTcgctgtttttgtttttgttttgtttgttcgTACCCAGT
TATTTCAGCAAATGGCCATAAGATATTGAGAAATCTGCTTGTACTTTTTC
TGAAGGGACtatgaatacacgctttttggacctacccctGTGGGGTGGAG
GTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTCGTTACCAGCTTTTCT
CGAGATTgaatcataggaatcatttgatttttggtacaaaggtgcaaaat
ggtggtggccaaaatgtgacg Run BLAST on NCBI protein sequence of SOX2 >TCONS_00065268-protein ID=TCONS_00065268-protein|Name=SOX2|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MMLLDKRATYDKTKTYTLDELMEMSNLEPAGHHAKPNHIKRPMNSFMVWS
RMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHI
QEHPEYKYRPRRKPKLSVPTQHHVRKHQSTAAGKTVPIPIPEYIPSRSGS
RPAVVPVYYHSPHYIQHPGSTREGHPVHYPTTAREVRYYRPRSPDYNGRS
RSPVDRDREYRHSPGVVYRSYSPPPQPREAYYYQSRSEAKQNSYHDDEPS
DGENKTDTNTEETNNNNTEKKSSSGENNHDENDNVKASTTTVTKPRKKGV
DDLLGLKLRKQAQQKEQEEESEKEKNERKEEANTTVEKRESRNSGSKPVY
YKYERYTSPPPPSHHREYRQGSSYMVPVPIVLHPHSSHGEICYKDCCMVP
ATSYYPHHPHEGVEYRRTYSSDKTRCYSPDYESGSSKKTYVVYGERPPSS
SPPTPMVAARSRSPSPPQQTEKREKTPPSKEKSPQSSPKDTGNETD Run BLAST on NCBI transcript from alignment at scaffold_435:352230..356405+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065268 ID=TCONS_00065268|Name=TCONS_00065268|organism=Clytia hemisphaerica|type=transcript|length=4176bp|location=Sequence derived from alignment at scaffold_435:352230..356405+ (Clytia hemisphaerica)
GTTCGTCAatagaaacaaatttttatgatGTTGCTTGACAAAAGGTTgct
tttacctttttttatcCTAGCTTGTAAAAGAAACTAAATATTCTGTTGTA
GAGATGAAATGATTTATAACGGTAGAACTTCTTGTAAAACCATTCATTTC
TTTTCTCTTTAGTTCTTCAGTGTTCTTCATATGAATGGTTTTATGAAGAT
GTCGACTGTTGTGAATCATGCTTATCCTAAACacagtttttgtttttctt
agcATAGAATAAAGCGAGGCGATTATGATTCAACATTAAAGTTAAATACA
ATGAAATGAGAAAGTTGTGGATTTATACTCTACTggttcatcaaagtcac
tcaaTAAGAAAGATCGAGTGGTGTTTTCATTAGAGTGAAATCTCTCCTAT
ATTTATTGTTTGTGCACGCTTATAACAAAATCTGTTATAGGGATGCGTAT
GCAGCCTATGTATAATTTGACTTCTTTCTATCATTGAACACCGTTCCGCT
CTTTCTCATCCTTCAGGGCGACATACGATAAGACGAAGACGTACACACTT
GATGAACTGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCTAA
ACCAAATCACATCAAACGACCGATGAACTCGTTCATGGTAAGAAGCAGAT
TCATATCCCTCGGATgttgttaacttttttttagttttaagccttaaaat
gttcttaacatgctcttgTTATCGCCGTTTTGTGAGCACTTTTGTtcatt
tccctaagaaatcgggtcTTATAGGGTCtgcaaaagccttaaaatgttct
taactggTTCTTAGTAtattggccatcgaagccttatgttcttataaaaa
atggcTATATCATTGAGAGGATAATCGAAATGTTTTGCCATTAATGAAAT
GGGGGTGTACTTACGCAAAATGGGAGTTGGTTATGTGCGAGGTGTAAGGG
TCTTGAAAGACTCTCGCAGAggtttaaaaagcaatttagtcTAATAAGGT
TCCAAGATTACGATACGCTCGGACATAACCGTCTCCTCAAAAACACAACT
TCTTCAAGGAGttcaatattttacaaatacatTACTTATTTCTAGCATAT
CTTTAAGTTTTCTACTAAGAGCTTTTACAACTCAATTGGATTGGATTCTC
ACACTAGATAAATAGCACTTTAATTTAGGATAAATCTTTCTTCCATTCAA
ACTTTCTTAAGCTTGAAAAACAAGAGCTGCAAAGGTTTCGAGCTGTAGat
gttttcagaaaatgaatATTTCTCTTCTATTCAAACAGGTTTGGTCGAGA
ATGGAACgcaagcgtatcagtgaagaaAATCCGAAACTTCACAATTCAGA
GATCTCCAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGAAC
GAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCCAA
GAACATCCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCTGT
CCCTACACAACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAAAA
CAGTACCCATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCACGT
CCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACATCC
TGGATCCACACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCGTG
AAGTCCGTTACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAAGA
AGCCCAGTTGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTTTA
TCGATCATATAGCCCACCTCCTCAACCTAGGNTAACTGGTTCTTAGTAta
ttggccatcgaagccttatgttcttataaaaaatggcTATATCATTGAGA
GGATAATCGAAATGTTTTGCCATTAATGAAATGGGGGTGTACTTACGCAA
AATGGGAGTTGGTTATGTGCGAGGTGTAAGGGTCTTGAAAGACTCTCGCA
GAggtttaaaaagcaatttagtcTAATAAGGTTCCAAGATTACGATACGC
TCGGACATAACCGTCTCCTCAAAAACACAACTTCTTCAAGGAGtttaata
ttttacaaatacatTACTTATTTCTAGCATATCTTTAAGTTTTCTACTAA
GAGCTTTTACAACTCAATTGGATTGGATTCTCACACTAGATAAATAGCAC
TTTAATTTAAGATAAATCTTTCTTCCATTCAAACTTTCTTAAGCTTGAAA
AACAAGAGCTGCAAAGGTTTCGAGCTGTAGatgttttcagaaaatgaatA
TTTCTCTTCTATTCAAACAGGTTTGGTCGAGAATGGAACgcaagcgtatc
agtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTTGG
TGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGAAG
AGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATAAG
TATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCATGT
TCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTATTC
CTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTGTG
TATTACCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAAGG
CCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCGCC
CTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTGAT
AGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCACC
TCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTAAAC
AGAATAGTTACCATGACGATGAGCCATCCGACGGCGAAAATAAAACTGAC
ACAAACACTGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTCGTC
TGGCGAAAATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAACGA
CTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTGAAA
TTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAAAGA
GAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCGAAT
CTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTATACG
TCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTCCTA
TATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAGAGA
TCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCACAC
CACCCTCATGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAAAAC
AAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTTATG
TTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATGGTA
GCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAGGGA
GAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAGACA
CTGGAAATGAAACAGACTAAATAAAAGTTTCAGAGATTTCCTCCTTTCCA
TCAACAATTTGGTCGCGATAAACTCTCTTTCctttttttgtatatattta
cTGCATTTGTGTTTTTCCTCATTTACCTTACCACAAAAACcgataatttt
ttcctgcttttGTTTATATTCAAGATTTCGTTGTTAAAAGATTCACATGA
TATAGAAACAGCGTTTTTTCACCCTACAGATTTTCATATTTGCCTTTTAG
AATTCACTATTTGTCTTcgctgtttttgtttttgttttgtttgttcgTAC
CCAGTTATTTCAGCAAATGGCCATAAGATATTGAGAAATCTGCTTGTACT
TTTTCTGAAGGGACtatgaatacacgctttttggacctacccctGTGGGG
TGGAGGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTCGTTACCAGCT
TTTCTCGAGATTgaatcataggaatcatttgatttttggtacaaaggtgc
aaaatggtggtggccaaaatgtgacg Coding sequence (CDS) from alignment at scaffold_435:352230..356405+ >TCONS_00065268 ID=TCONS_00065268|Name=TCONS_00065268|organism=Clytia hemisphaerica|type=CDS|length=4473bp|location=Sequence derived from alignment at scaffold_435:352230..356405+ (Clytia hemisphaerica)
atgatGTTGCTTGACAAAAGGGCGACATACGATAAGACGAAGACGTACAC
ACTTGATGAACTGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATG
CTAAACCAAATCACATCAAACGACCGATGAACTCGTTCATGGTTTGGTCG
AGAATGGAACgcaagcgtatcagtgaagaaAATCCGAAACTTCACAATTC
AGAGATCTCCAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGG
AACGAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATC
CAAGAACATCCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTC
TGTCCCTACACAACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCA
AAACAGTACCCATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCA
CGTCCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACA
TCCTGGATCCACACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCC
GTGAAGTCCGTTACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCA
AGAAGCCCAGTTGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGT
TTATCGATCATATAGCCCACCTCCTCAACCTAGAGAAGCGTACTACTATC
AATCAAGATCAGAGGCTAAACAGAATAGTTACCATGACGATGAGCCATCC
GACGGCGAAAATAAAACTGACACAAACACTGAGGAGACGAACAATAACAA
CACCGAGAAAAAATCGTCGTCTGGCGAAAATAACCATGACGAAAACGACA
ATGTGAAAGCCTCGACAACGACTGTAACGAAACCACGTAAAAAGGGCGTC
GACGATTTATTAGGCTTGAAATTACGAAAACAAGCGCAACAGAAAGAACA
AGAGGAAGAGAGCGAGAAAGAGAAGAATGAACGTAAAGAAGAAGCAAATA
CAACTGTCGAAAAACGCGAATCTCGTAACAGCGGCAGCAAACCAGTGTAT
TACAAATATGAACGTTATACGTCGCCGCCTCCTCCCTCACACCATCGAGA
ATATAGACAGGGTTCCTCCTATATGGTACCCGTCCCAATCGTTCTTCATC
CTCACTCCTCCCATGGAGAGATCTGTTACAAGGACTGCTGTATGGTCCCT
GCTACCTCTTACTACCCACACCACCCTCATGAAGGGGTCGAATACAGACG
TACATATAGTAGTGACAAAACAAGATGCTACAGTCCTGATTACGAAAGTG
GTAGCTCTAAAAAGACTTATGTTGTATATGGGGAGCGGCCACCTTCTTCC
TCCCCTCCTACCCCTATGGTAGCTGCCAGGAGCAGGTCTCCCTCTCCACC
GCAACAGACTGAAAAAAGGGAGAAGACTCCCCCTTCAAAAGAGAAGTCAC
CTCAATCTTCACCTAAAGACACTGGAAATGAAACAGACTAAatgatGTTG
CTTGACAAAAGGGCGACATACGATAAGACGAAGACGTACACACTTGATGA
ACTGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCTAAACCAA
ATCACATCAAACGACCGATGAACTCGTTCATGGTTTGGTCGAGAATGGAA
CgcaagcgtatcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTC
CAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAAC
CGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACAT
CCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTAC
ACAACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTAC
CCATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCA
GTGGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACATCCTGGATC
CACACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCC
GTTACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCA
GTTGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATC
ATATAGCCCACCTCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGAT
CAGAGGCTAAACAGAATAGTTACCATGACGATGAGCCATCCGACGGCGAA
AATAAAACTGACACAAACACTGAGGAGACGAACAATAACAACACCGAGAA
AAAATCGTCGTCTGGCGAAAATAACCATGACGAAAACGACAATGTGAAAG
CCTCGACAACGACTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTA
TTAGGCTTGAAATTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGA
GAGCGAGAAAGAGAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCG
AAAAACGCGAATCTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATAT
GAACGTTATACGTCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACA
GGGTTCCTCCTATATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCT
CCCATGGAGAGATCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCT
TACTACCCACACCACCCTCATGAAGGGGTCGAATACAGACGTACATATAG
TAGTGACAAAACAAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTA
AAAAGACTTATGTTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCT
ACCCCTATGGTAGCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGAC
TGAAAAAAGGGAGAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTT
CACCTAAAGACACTGGAAATGAAACAGACTAAatgatGTTGCTTGACAAA
AGGGCGACATACGATAAGACGAAGACGTACACACTTGATGAACTGATGGA
GATGTCAAACTTGGAACCAGCTGGTCATCATGCTAAACCAAATCACATCA
AACGACCGATGAACTCGTTCATGGTTTGGTCGAGAATGGAACgcaagcgt
atcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCT
TGGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTG
AAGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTAT
AAGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCA
TGTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTA
TTCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCT
GTGTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGA
AGGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACC
GCCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGT
GATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCC
ACCTCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTA
AACAGAATAGTTACCATGACGATGAGCCATCCGACGGCGAAAATAAAACT
GACACAAACACTGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTC
GTCTGGCGAAAATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAA
CGACTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTG
AAATTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAA
AGAGAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCG
AATCTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTAT
ACGTCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTC
CTATATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAG
AGATCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCA
CACCACCCTCATGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAA
AACAAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTT
ATGTTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATG
GTAGCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAG
GGAGAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAG
ACACTGGAAATGAAACAGACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065268-exon-scaffold_435-1491911889:352230..352273 | TCONS_00065268-exon-scaffold_435-1491911889:352230..352273 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1510915933:352230..352273 | TCONS_00065268-exon-scaffold_435-1510915933:352230..352273 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1575043694:352230..352273 | TCONS_00065268-exon-scaffold_435-1575043694:352230..352273 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1491911889:352746..352866 | TCONS_00065268-exon-scaffold_435-1491911889:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1510915933:352746..352866 | TCONS_00065268-exon-scaffold_435-1510915933:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1575043694:352746..352866 | TCONS_00065268-exon-scaffold_435-1575043694:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1491911889:354550..356405 | TCONS_00065268-exon-scaffold_435-1491911889:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1510915933:354550..356405 | TCONS_00065268-exon-scaffold_435-1510915933:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065268-exon-scaffold_435-1575043694:354550..356405 | TCONS_00065268-exon-scaffold_435-1575043694:354550..356405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:352230..356405 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR009071 | HMG_box_dom |
Blast
BLAST of TCONS_00065268 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.691e-34 Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 1
Query: 133 NHIKRPMNSFMVWSRMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHIQEHPEYKYRPRRKPK 369
+HIKRPMN+FMVWSR +R+++++ENPK+HNSEISKRLGA WK+LSE E++P+ +EAKRLR H++EHP+YKYRPRRKPK
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPK 84
The following BLAST results are available for this feature:
|
