XLOC_040922 (gene) - C. hemisphaerica

Overview
NameXLOC_040922
Unique NameXLOC_040922
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_435:347778..356405+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_040922 ID=XLOC_040922|Name=XLOC_040922|organism=Clytia hemisphaerica|type=gene|length=8628bp|location=Sequence derived from alignment at scaffold_435:347778..356405+ (Clytia hemisphaerica)
ATTGAAAGAAGAACGCCTTTACTATTGAAAGCAGTTATTTAGAGTATtgt tttcttacaacaataGATTATTAAAATGGATACAATAAAAACAGAAGAAA GTTGTTTTGAAGAATAAGTATAATAAAACAAGTTGAAGAGGAGGAGGATT ACTTCAGAAGAAGAGTTTTCAAAAGTTGAAGCATCTTTTTGTAAAGAACT TTCATCACCATCCATCAAAAGGAGAATACCAACTATATTATCTATCATTT GGTGGAGGGAAGAAGAAGGAATCTTTTGTTCGACTTTCGATTGAGGTAAG acatttttgtgtattttttcttttttttaatatgtATAGAAAAGGTTGTA AGAAAAACTTTTCCCCTTTTACTCCTTTTTCCTCccttcttttcttttat aataattatactttttttactttctattttttaattgaattctTAAAATC ACAGAGGAGTCATCTCGTATTGTTTTGACTTGCAATAGAACCTTTTGTCT TTCCTCTATTCAACTAGCCCCTTTCTACTGTCAAAGAAATGTTATTTCTG AATACAAAACTGAACAAAAAAATGAGACTTTTTAGAATGAATAAAGTATA TTTTTGGTGTGCGTTGGTTGAGTTGTGTACTGTAAATGATATCTTTCTct cctttctttttttatatattttgttatgttttgaaGAGAAACCTCAGTAC AAACTAGTTACTTAAATCAACCTCTATTGACCTTATCTATTGTTATTCCA TCTCGTAGTGTTGTTCAAAGGCTTTCCCAACACAAAAAAACTCGAAACGA ATCTCTTTCTTTCTCTCTGAACCGTTTTATGTATTATATGGCAACATTTG ATCACAGGGACTATTgtcttttgttgatttttgaagtATAAGCAGCTCTA TTATGATAATATTTGTTCTCAGATACAAAAAGATGTTATTATATGCAATG CATTTTATACTTTGATGAGTTCTTGActgctttttttaatttttgttgca TATCGTTCGGTTGATATAGTATATTTGTATTAAATTGTCTGGACAAGTTC ACCTTTGGTTGTCTTTCTTGTAAGaactcttcatttttcatctttatttt ctatGCCTTACTGGTAGAATCTCCACTATTTAAACTCGTTGTCTTACTTC CATATGCTCCTTATTCGTGTACTACCCATAATATCAGACTTGTCCCTCGT TTCACTCGACACATGTTTTTATATATACGATATAGACACTTCTTCTTCTT AAGTACTTGGATGTTTAAATTATTTGGAATAGCTTCAATTAAACTTTCGG TTTGTGTTGACGGACTATAGTTTCAGTGCTCAAAGTTAAGCTCTGAACAT TGCAGTATATTAGCAACGGAGCTGTTTGGAGCTTAGCGAATAAGATGTTC GTCGGTTACCTAATTAATTATCAAACAGGAAGTAGAGTGTGGAGAGAGGG GAGGGGGAGAAAAGTTCATTCTGTTACAGATTAATATCTAATGTTTTGTA GCTAGTTAATCCTCTTGCCACCTGTCGATCTCATACCTCTAGTCGTTGAT CATTTACCAACATTCAACGGTATAAAAACAGTATTTTTTAAGAGGGTCGT TTTCTTATTATCtgatgaaaaaaagagaaaatcactTTTGACAGATTGAA AATNTCCTTCATACGTCGCGTATGGTGACTGTTGTTTGTTTTACtggatt gaaatattttttacacgAAAAGCAacgtttttggctgttaaataaTAATG TATTTGCATCATGACtgtagaaatttattttttattatttttctctaCGC AACAATGAAAAgtctttttaaataatttgactGACATACTCCTCCCcctt tttgtaaaatgttgttaAATTAAAATGTACAGATAGGTGCCACTACAAAA GAATTACAATATTCAATTatatttaatcattttttattgaattttaccTG AAATTATTTGGCACGCGAGGCTGTTGGGTATTATTTTCTATCATTCAATG GGGATTTAGGAAGTCAGGCTCTTCTTTACCCTAGGTACCTTTTCTATtgg tgttttttcttttcttttctcttgaCGTCGAAAACAATATGTTAAATGAT TTCTCATTCTAAAGAGTTTGCTATCATAATATTTTCATCAAAGCATTCAA ACAAAACTCGTCTTCTCATTGAATTATTCTGAATAGTCCTTTTGGCAGCT TAGCTTTTCtgctcttttttcttcttcaattttttttttgaatagaaaAG AAAGGGTTTGGgtataagtagagaacaaacaCAATAGGTTATAAACTatt ctttctttctttgattcGATTATTAATTtgaatgaagaaattttcatctt tatttttttcatagctGACATTTTAAATGAATGCGAACACCGGCAATCAA AGTATTGAAAGAAGAACGCCTTTACTATTGAAAGCAGTTATTTAGAGTAT tgttttcttacaacaataGATTATTAAAATGGATACAATAAAAACAGAAG AAAGTTGTTTTGAAGAATAAGTATAATAAAACAAGTTGAAGAGGAGGAGG ATTACTTCAGAAGAAGAGTTTTCAAAAGTTGAAGCATCTTTTTGTAAAGA ACTTTCATCATCATCCATCAAAAGGAGAATACCAACTATCTTATCTATCA TTTGGTGGAAGGAAGAAGAAGGAATCTTTTGTTCGACTTTCGATTGAGGT AAGacatttttatgtattttttcttttttttaatatgtATAGAAAAGGTT GTAAGAAAAACTTTTCCCCTTTTATNCCAACATTCAACGGTATAAAAACA GTATTTTTTAAGAGGGTCGTTTTCTTATTATCtgatgaaaaaaagagaaa atcactTTTGACAGATTGAAAATTAGTGAAAGGatccttctttttttttt cattttatttaaatGGGAAGAAAAAATAGCTTCTTTTGTTATGCTTACGA TTCGCAAAACGTCCTCTATTCTTTTGTCTTCTATATGTTTTCTTAAACCA TTGGCTATTATATTCCATTTTTCTTGTGCtgtttttataataataacTCT GAGGTTAATAAATACTTATCGAGCAACAATAGAAAagactcaattttctt tttaaatccaAACTCTGTATTATGCTATTATTTACCTTTGTGTTTTGTTC TCTATTGTTTATCAATGACTAAGATTTATGTTGGATTTATAacaactttc ttttcttttcacaaaaaaacctCGTTATTACAAGCTGTGTGTGTAGTGTT GAGTTGAGGAGAGGAGTCGTCGAATATACGAAGCGACGAGAAAAATTTTG GATGGAAAAAAAGAATTCATTTCTCATAAATGATAAGAAGTTGATTGACc taaacacaaaaaaataactttcagaAATGTAAgcagatcttttttttttt gttttcttttctctgATAAAAAAGTCTTTCCTTTTGATACAACAATATTG AAGTTACTTCCTCTTACTTAAGCTCAACTGAAATTTTCTTCTAGATACTT TAATATTAGTTACCCTTCTAACCTGAATTTCCTACAGATATTTTCTCGCA CAAATTCCGCTGACTTGTTCTCTAGATCCAAGTTAATCTTAATTTTAATC ACAAGGAGAACATTTTATTTAGTCCCCTTGTCATTGAGAAGTATATCATC CTCCCATCATCCCATGGATAGGAAAGCTATGATAGAATTAACTGTTTAAG TCTCGTGAAACTATTAAGTTTAAAACTAAAATGAAACTCACTTTTTAACC TCTGACCATAACCACTAATTACCTTGAAAGCCTATAATTaaatctgtaaa atacaacCTCAGACGGTCAGAGAGAGACGAGAGAGATACATAACAAAACC CTCAAAGTTTCTTTCTGGTGACCTGGAAGTGTTGTTCCAATGTTGTGGCT ATGATTTCCACtcaaattatcaattttacTTATAAGAATAGATCATTATC AAAAGTTTAGCTTTTAAAAGCTCTTCCTGttcaaaattattcttataaaa aactgatATTTTATTAATACCTGACACTCGGTAACTAATTACTTGTTCCC TCATTGTCTTACCATTCGCGATTTGTTATAAGATTAGAAACCGTTTCTCA GGCTCCTTAAATTAAGACTAAATTCTGATCGTAATAAATGTAATGCTGCC ATGTTGAGTGAAAAGATCGGTTGGAAAAGTATCGCTCTAAACTTTTTTTA TCGTCGAAATACGTATCTATCGTATTTCCAAGCTTtccaaagtagtattt cttatgaaaaatacaTTGTCAACACATTAAAAATGTATCAATTGATATTG CTCGACTGAACTTAGCAGCAGCCGTTTTTCAAATTACTGATGAATGCTCT TTCGTTGCCTACccttttgactttttaaagagGTTGCACAAAAGCTCTGA TTTCTTATATAAAACCTTTACGAGTCAATCTTAAGTGAATCAATGGTTTT TTGTTCGTCAatagaaacaaatttttatgatGTTGCTTGACAAAAGGTTg cttttacctttttttatcCTAGCTTGTAAAAGAAACTAAATATTCTGTTG TAGAGATGAAATGATTTATAACGGTAGAACTTCTTGTAAAACCATTCATT TCTTTTCTCTTTAGTTCTTCAGTGTTCTTCATATGAATGGTTTTATGAAG ATGTCGACTGTTGTGAATCATGCTTATCCTAAACacagtttttgtttttc ttagcATAGAATAAAGCGAGGCGATTATGATTCAACATTAAAGTTAAATA CAATGAAATGAGAAAGTTGTGGATTTATACTCTACTggttcatcaaagtc actcaaTAAGAAAGATCGAGTGGTGTTTTCATTAGAGTGAAATCTCTCCT ATATTTATTGTTTGTGCACGCTTATAACAAAATCTGTTATAGGGATGCGT ATGCAGCCTATGTATAATTTGACTTCTTTCTATCATTGAACACCGTTCCG CTCTTTCTCATCCTTCAGGGCGACATACGATAAGACGAAGACGTACACAC TTGATGAACTGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCT AAACCAAATCACATCAAACGACCGATGAACTCGTTCATGGTAAGAAGCAG ATTCATATCCCTCGGATgttgttaacttttttttagttttaagccttaaa atgttcttaacatgctcttgTTATCGCCGTTTTGTGAGCACTTTTGTtca tttccctaagaaatcgggtcTTATAGGGTCtgcaaaagccttaaaatgtt cttaactggTTCTTAGTAtattggccatcgaagccttatgttcttataaa aaatggcTATATCATTGAGAGGATAATCGAAATGTTTTGCCATTAATGAA ATGGGGGTGTACTTACGCAAAATGGGAGTTGGTTATGTGCGAGGTGTAAG GGTCTTGAAAGACTCTCGCAGAggtttaaaaagcaatttagtcTAATAAG GTTCCAAGATTACGATACGCTCGGACATAACCGTCTCCTCAAAAACACAA CTTCTTCAAGGAGttcaatattttacaaatacatTACTTATTTCTAGCAT ATCTTTAAGTTTTCTACTAAGAGCTTTTACAACTCAATTGGATTGGATTC TCACACTAGATAAATAGCACTTTAATTTAGGATAAATCTTTCTTCCATTC AAACTTTCTTAAGCTTGAAAAACAAGAGCTGCAAAGGTTTCGAGCTGTAG atgttttcagaaaatgaatATTTCTCTTCTATTCAAACAGGTTTGGTCGA GAATGGAACgcaagcgtatcagtgaagaaAATCCGAAACTTCACAATTCA GAGATCTCCAAACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGA ACGAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCC AAGAACATCCTGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCT GTCCCTACACAACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAA AACAGTACCCATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCAC GTCCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACAT CCTGGATCCACACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCG TGAAGTCCGTTACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAA GAAGCCCAGTTGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTT TATCGATCATATAGCCCACCTCCTCAACCTAGGNTAACTGGTTCTTAGTA tattggccatcgaagccttatgttcttataaaaaatggcTATATCATTGA GAGGATAATCGAAATGTTTTGCCATTAATGAAATGGGGGTGTACTTACGC AAAATGGGAGTTGGTTATGTGCGAGGTGTAAGGGTCTTGAAAGACTCTCG CAGAggtttaaaaagcaatttagtcTAATAAGGTTCCAAGATTACGATAC GCTCGGACATAACCGTCTCCTCAAAAACACAACTTCTTCAAGGAGtttaa tattttacaaatacatTACTTATTTCTAGCATATCTTTAAGTTTTCTACT AAGAGCTTTTACAACTCAATTGGATTGGATTCTCACACTAGATAAATAGC ACTTTAATTTAAGATAAATCTTTCTTCCATTCAAACTTTCTTAAGCTTGA AAAACAAGAGCTGCAAAGGTTTCGAGCTGTAGatgttttcagaaaatgaa tATTTCTCTTCTATTCAAACAGGTTTGGTCGAGAATGGAACgcaagcgta tcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTT GGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGA AGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATA AGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCAT GTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTAT TCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTG TGTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAA GGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCG CCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTG ATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCA CCTCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTAA ACAGAATAGTTACCATGACGATGAGCCATCCGACGGCGAAAATAAAACTG ACACAAACACTGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTCG TCTGGCGAAAATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAAC GACTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTGA AATTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAAA GAGAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCGA ATCTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTATA CGTCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTCC TATATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAGA GATCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCAC ACCACCCTCATGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAAA ACAAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTTA TGTTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATGG TAGCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAGG GAGAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAGA CACTGGAAATGAAACAGACTAAATAAAAGTTTCAGAGATTTCCTCCTTTC CATCAACAATTTGGTCGCGATAAACTCTCTTTCctttttttgtatatatt tacTGCATTTGTGTTTTTCCTCATTTACCTTACCACAAAAACcgataatt ttttcctgcttttGTTTATATTCAAGATTTCGTTGTTAAAAGATTCACAT GATATAGAAACAGCGTTTTTTCACCCTACAGATTTTCATATTTGCCTTTT AGAATTCACTATTTGTCTTcgctgtttttgtttttgttttgtttgttcgT ACCCAGTTATTTCAGCAAATGGCCATAAGATATTGAGAAATCTGCTTGTA CTTTTTCTGAAGGGACtatgaatacacgctttttggacctacccctGTGG GGTGGAGGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTCGTTACCAG CTTTTCTCGAGATTgaatcataggaatcatttgatttttggtacaaaggt gcaaaatggtggtggccaaaatgtgacg
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00065264TCONS_00065264Clytia hemisphaericatranscript
TCONS_00065265TCONS_00065265Clytia hemisphaericatranscript
TCONS_00065266TCONS_00065266Clytia hemisphaericatranscript
TCONS_00065267TCONS_00065267Clytia hemisphaericatranscript
TCONS_00065268TCONS_00065268Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
SOX2TCONS_00065268-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_435supercontigscaffold_435:347778..356405 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.8 5.42 3.82 3.24 36.2 29.18 28.81 30.1 9.8 14.57 9.98 7.31 24.4 26.07 13.17 18.06 22.54 23.29 20.47 18.48 16.35 17.58 10.86 12.58 21.16 24.79 11.9 8.21 14.61 16.28