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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065267 ID=TCONS_00065267|Name=TCONS_00065267|organism=Clytia hemisphaerica|type=transcript|length=2136bp
cctCGTTATTACAAGCTGTGTGTGTAGTGTTGAGTTGAGGAGAGGAGTCG
TCGAATATACGAAGCGACGAGAAAAATTTTGGATGGAAAAAAAGAATTCA
TTTCTCATAAATGATAAGAAGTTGATTGACctaaacacaaaaaaataact
ttcagaAATGGCGACATACGATAAGACGAAGACGTACACACTTGATGAAC
TGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCTAAACCAAAT
CACATCAAACGACCGATGAACTCGTTCATGGTTTGGTCGAGAATGGAACg
caagcgtatcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCA
AACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCG
TTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCC
TGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACAC
AACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCC
ATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGT
GGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCA
CACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGT
TACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGT
TGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCAT
ATAGCCCACCTCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGATCA
GAGGCTAAACAGAATAGTTACCATGACGATGAGCCATCCGACGGCGAAAA
TAAAACTGACACAAACACTGAGGAGACGAACAATAACAACACCGAGAAAA
AATCGTCGTCTGGCGAAAATAACCATGACGAAAACGACAATGTGAAAGCC
TCGACAACGACTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTATT
AGGCTTGAAATTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGA
GCGAGAAAGAGAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCGAA
AAACGCGAATCTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATATGA
ACGTTATACGTCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACAGG
GTTCCTCCTATATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCC
CATGGAGAGATCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTA
CTACCCACACCACCCTCATGAAGGGGTCGAATACAGACGTACATATAGTA
GTGACAAAACAAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAA
AAGACTTATGTTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTAC
CCCTATGGTAGCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTG
AAAAAAGGGAGAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCA
CCTAAAGACACTGGAAATGAAACAGACTAAATAAAAGTTTCAGAGATTTC
CTCCTTTCCATCAACAATTTGGTCGCGATAAACTCTCTTTCctttttttg
tatatatttacTGCATTTGTGTTTTTCCTCATTTACCTTACCACAAAAAC
cgataattttttcctgcttttGTTTATATTCAAGATTTCGTTGTTAAAAG
ATTCACATGATATAGAAACAGCGTTTTTTCACCCTACAGATTTTCATATT
TGCCTTTTAGAATTCACTATTTGTCTTcgctgtttttgtttttgttttgt
ttgttcgTACCCAGTTATTTCAGCAAATGGCCATAAGATATTGAGAAATC
TGCTTGTACTTTTTCTGAAGGGACtatgaatacacgctttttggacctac
ccctGTGGGGTGGAGGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTC
GTTACCAGCTTTTCTCGAGATTgaatcataggaatcatttgatttttggt
acaaaggtgcaaaatggtggtggccaaaatgtgacg Run BLAST on NCBI transcript from alignment at scaffold_435:350997..356405+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065267 ID=TCONS_00065267|Name=TCONS_00065267|organism=Clytia hemisphaerica|type=transcript|length=5409bp|location=Sequence derived from alignment at scaffold_435:350997..356405+ (Clytia hemisphaerica)
cctCGTTATTACAAGCTGTGTGTGTAGTGTTGAGTTGAGGAGAGGAGTCG
TCGAATATACGAAGCGACGAGAAAAATTTTGGATGGAAAAAAAGAATTCA
TTTCTCATAAATGATAAGAAGTTGATTGACctaaacacaaaaaaataact
ttcagaAATGTAAgcagatctttttttttttgttttcttttctctgATAA
AAAAGTCTTTCCTTTTGATACAACAATATTGAAGTTACTTCCTCTTACTT
AAGCTCAACTGAAATTTTCTTCTAGATACTTTAATATTAGTTACCCTTCT
AACCTGAATTTCCTACAGATATTTTCTCGCACAAATTCCGCTGACTTGTT
CTCTAGATCCAAGTTAATCTTAATTTTAATCACAAGGAGAACATTTTATT
TAGTCCCCTTGTCATTGAGAAGTATATCATCCTCCCATCATCCCATGGAT
AGGAAAGCTATGATAGAATTAACTGTTTAAGTCTCGTGAAACTATTAAGT
TTAAAACTAAAATGAAACTCACTTTTTAACCTCTGACCATAACCACTAAT
TACCTTGAAAGCCTATAATTaaatctgtaaaatacaacCTCAGACGGTCA
GAGAGAGACGAGAGAGATACATAACAAAACCCTCAAAGTTTCTTTCTGGT
GACCTGGAAGTGTTGTTCCAATGTTGTGGCTATGATTTCCACtcaaatta
tcaattttacTTATAAGAATAGATCATTATCAAAAGTTTAGCTTTTAAAA
GCTCTTCCTGttcaaaattattcttataaaaaactgatATTTTATTAATA
CCTGACACTCGGTAACTAATTACTTGTTCCCTCATTGTCTTACCATTCGC
GATTTGTTATAAGATTAGAAACCGTTTCTCAGGCTCCTTAAATTAAGACT
AAATTCTGATCGTAATAAATGTAATGCTGCCATGTTGAGTGAAAAGATCG
GTTGGAAAAGTATCGCTCTAAACTTTTTTTATCGTCGAAATACGTATCTA
TCGTATTTCCAAGCTTtccaaagtagtatttcttatgaaaaatacaTTGT
CAACACATTAAAAATGTATCAATTGATATTGCTCGACTGAACTTAGCAGC
AGCCGTTTTTCAAATTACTGATGAATGCTCTTTCGTTGCCTACccttttg
actttttaaagagGTTGCACAAAAGCTCTGATTTCTTATATAAAACCTTT
ACGAGTCAATCTTAAGTGAATCAATGGTTTTTTGTTCGTCAatagaaaca
aatttttatgatGTTGCTTGACAAAAGGTTgcttttacctttttttatcC
TAGCTTGTAAAAGAAACTAAATATTCTGTTGTAGAGATGAAATGATTTAT
AACGGTAGAACTTCTTGTAAAACCATTCATTTCTTTTCTCTTTAGTTCTT
CAGTGTTCTTCATATGAATGGTTTTATGAAGATGTCGACTGTTGTGAATC
ATGCTTATCCTAAACacagtttttgtttttcttagcATAGAATAAAGCGA
GGCGATTATGATTCAACATTAAAGTTAAATACAATGAAATGAGAAAGTTG
TGGATTTATACTCTACTggttcatcaaagtcactcaaTAAGAAAGATCGA
GTGGTGTTTTCATTAGAGTGAAATCTCTCCTATATTTATTGTTTGTGCAC
GCTTATAACAAAATCTGTTATAGGGATGCGTATGCAGCCTATGTATAATT
TGACTTCTTTCTATCATTGAACACCGTTCCGCTCTTTCTCATCCTTCAGG
GCGACATACGATAAGACGAAGACGTACACACTTGATGAACTGATGGAGAT
GTCAAACTTGGAACCAGCTGGTCATCATGCTAAACCAAATCACATCAAAC
GACCGATGAACTCGTTCATGGTAAGAAGCAGATTCATATCCCTCGGATgt
tgttaacttttttttagttttaagccttaaaatgttcttaacatgctctt
gTTATCGCCGTTTTGTGAGCACTTTTGTtcatttccctaagaaatcgggt
cTTATAGGGTCtgcaaaagccttaaaatgttcttaactggTTCTTAGTAt
attggccatcgaagccttatgttcttataaaaaatggcTATATCATTGAG
AGGATAATCGAAATGTTTTGCCATTAATGAAATGGGGGTGTACTTACGCA
AAATGGGAGTTGGTTATGTGCGAGGTGTAAGGGTCTTGAAAGACTCTCGC
AGAggtttaaaaagcaatttagtcTAATAAGGTTCCAAGATTACGATACG
CTCGGACATAACCGTCTCCTCAAAAACACAACTTCTTCAAGGAGttcaat
attttacaaatacatTACTTATTTCTAGCATATCTTTAAGTTTTCTACTA
AGAGCTTTTACAACTCAATTGGATTGGATTCTCACACTAGATAAATAGCA
CTTTAATTTAGGATAAATCTTTCTTCCATTCAAACTTTCTTAAGCTTGAA
AAACAAGAGCTGCAAAGGTTTCGAGCTGTAGatgttttcagaaaatgaat
ATTTCTCTTCTATTCAAACAGGTTTGGTCGAGAATGGAACgcaagcgtat
cagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTTG
GTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGAA
GAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATAA
GTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCATG
TTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTATT
CCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTGT
GTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAAG
GCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCGC
CCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTGA
TAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCAC
CTCCTCAACCTAGGNTAACTGGTTCTTAGTAtattggccatcgaagcctt
atgttcttataaaaaatggcTATATCATTGAGAGGATAATCGAAATGTTT
TGCCATTAATGAAATGGGGGTGTACTTACGCAAAATGGGAGTTGGTTATG
TGCGAGGTGTAAGGGTCTTGAAAGACTCTCGCAGAggtttaaaaagcaat
ttagtcTAATAAGGTTCCAAGATTACGATACGCTCGGACATAACCGTCTC
CTCAAAAACACAACTTCTTCAAGGAGtttaatattttacaaatacatTAC
TTATTTCTAGCATATCTTTAAGTTTTCTACTAAGAGCTTTTACAACTCAA
TTGGATTGGATTCTCACACTAGATAAATAGCACTTTAATTTAAGATAAAT
CTTTCTTCCATTCAAACTTTCTTAAGCTTGAAAAACAAGAGCTGCAAAGG
TTTCGAGCTGTAGatgttttcagaaaatgaatATTTCTCTTCTATTCAAA
CAGGTTTGGTCGAGAATGGAACgcaagcgtatcagtgaagaaAATCCGAA
ACTTCACAATTCAGAGATCTCCAAACGTCTTGGTGCTTCATGGAAAATGT
TATCTGAAGAGGAACGAAAACCGTTCGCTGAAGAGGCCAAAAGATTACGT
CAGATTCACATCCAAGAACATCCTGAGTATAAGTATCGTCCACGACGGAA
GCCGAAACTGTCTGTCCCTACACAACATCATGTTCGTAAACATCAATCTA
CGGCTGCCGGCAAAACAGTACCCATTCCTATTCCTGAATATATACCATCT
AGAAGTGGTTCACGTCCTGCAGTGGTCCCTGTGTATTACCATAGTCCGCA
CTATATTCAACATCCTGGATCCACACGTGAAGGCCATCCTGTTCACTATC
CAACTACCGCCCGTGAAGTCCGTTACTACCGCCCTCGAAGTCCAGATTAT
AACGGGCGTTCAAGAAGCCCAGTTGATCGTGATAGAGAGTACCGCCATTC
ACCGGGCGTTGTTTATCGATCATATAGCCCACCTCCTCAACCTAGAGAAG
CGTACTACTATCAATCAAGATCAGAGGCTAAACAGAATAGTTACCATGAC
GATGAGCCATCCGACGGCGAAAATAAAACTGACACAAACACTGAGGAGAC
GAACAATAACAACACCGAGAAAAAATCGTCGTCTGGCGAAAATAACCATG
ACGAAAACGACAATGTGAAAGCCTCGACAACGACTGTAACGAAACCACGT
AAAAAGGGCGTCGACGATTTATTAGGCTTGAAATTACGAAAACAAGCGCA
ACAGAAAGAACAAGAGGAAGAGAGCGAGAAAGAGAAGAATGAACGTAAAG
AAGAAGCAAATACAACTGTCGAAAAACGCGAATCTCGTAACAGCGGCAGC
AAACCAGTGTATTACAAATATGAACGTTATACGTCGCCGCCTCCTCCCTC
ACACCATCGAGAATATAGACAGGGTTCCTCCTATATGGTACCCGTCCCAA
TCGTTCTTCATCCTCACTCCTCCCATGGAGAGATCTGTTACAAGGACTGC
TGTATGGTCCCTGCTACCTCTTACTACCCACACCACCCTCATGAAGGGGT
CGAATACAGACGTACATATAGTAGTGACAAAACAAGATGCTACAGTCCTG
ATTACGAAAGTGGTAGCTCTAAAAAGACTTATGTTGTATATGGGGAGCGG
CCACCTTCTTCCTCCCCTCCTACCCCTATGGTAGCTGCCAGGAGCAGGTC
TCCCTCTCCACCGCAACAGACTGAAAAAAGGGAGAAGACTCCCCCTTCAA
AAGAGAAGTCACCTCAATCTTCACCTAAAGACACTGGAAATGAAACAGAC
TAAATAAAAGTTTCAGAGATTTCCTCCTTTCCATCAACAATTTGGTCGCG
ATAAACTCTCTTTCctttttttgtatatatttacTGCATTTGTGTTTTTC
CTCATTTACCTTACCACAAAAACcgataattttttcctgcttttGTTTAT
ATTCAAGATTTCGTTGTTAAAAGATTCACATGATATAGAAACAGCGTTTT
TTCACCCTACAGATTTTCATATTTGCCTTTTAGAATTCACTATTTGTCTT
cgctgtttttgtttttgttttgtttgttcgTACCCAGTTATTTCAGCAAA
TGGCCATAAGATATTGAGAAATCTGCTTGTACTTTTTCTGAAGGGACtat
gaatacacgctttttggacctacccctGTGGGGTGGAGGTCCTATAAATT
CACCTCTGTCCGTCCGTCCGTTCGTTACCAGCTTTTCTCGAGATTgaatc
ataggaatcatttgatttttggtacaaaggtgcaaaatggtggtggccaa
aatgtgacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065267-exon-scaffold_435-1491911889:350997..351155 | TCONS_00065267-exon-scaffold_435-1491911889:350997..351155 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1510915933:350997..351155 | TCONS_00065267-exon-scaffold_435-1510915933:350997..351155 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1575043694:350997..351155 | TCONS_00065267-exon-scaffold_435-1575043694:350997..351155 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1491911889:352746..352866 | TCONS_00065267-exon-scaffold_435-1491911889:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1510915933:352746..352866 | TCONS_00065267-exon-scaffold_435-1510915933:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1575043694:352746..352866 | TCONS_00065267-exon-scaffold_435-1575043694:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1491911889:354550..356405 | TCONS_00065267-exon-scaffold_435-1491911889:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1510915933:354550..356405 | TCONS_00065267-exon-scaffold_435-1510915933:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065267-exon-scaffold_435-1575043694:354550..356405 | TCONS_00065267-exon-scaffold_435-1575043694:354550..356405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:350997..356405 + |
Blast
BLAST of TCONS_00065267 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 5.469e-34 Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 2
Query: 248 NHIKRPMNSFMVWSRMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHIQEHPEYKYRPRRKPK 484
+HIKRPMN+FMVWSR +R+++++ENPK+HNSEISKRLGA WK+LSE E++P+ +EAKRLR H++EHP+YKYRPRRKPK
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPK 84
The following BLAST results are available for this feature:
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