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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00065265 ID=TCONS_00065265|Name=TCONS_00065265|organism=Clytia hemisphaerica|type=transcript|length=2136bp
ATTTGTTCTCAGATACAAAAAGATGTTATTATATGCAATGCATTTTATAC
TTTGATGAGTTCTTGActgctttttttaatttttgttgcaTATCGTTCGG
TTGATATAGTATATTTGTATTAAATTGTCTGGACAAGTTCACCTTTGGTT
GTCTTTCTTGGCGACATACGATAAGACGAAGACGTACACACTTGATGAAC
TGATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCTAAACCAAAT
CACATCAAACGACCGATGAACTCGTTCATGGTTTGGTCGAGAATGGAACg
caagcgtatcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCA
AACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCG
TTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCC
TGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACAC
AACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCC
ATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGT
GGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCA
CACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGT
TACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGT
TGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCAT
ATAGCCCACCTCCTCAACCTAGAGAAGCGTACTACTATCAATCAAGATCA
GAGGCTAAACAGAATAGTTACCATGACGATGAGCCATCCGACGGCGAAAA
TAAAACTGACACAAACACTGAGGAGACGAACAATAACAACACCGAGAAAA
AATCGTCGTCTGGCGAAAATAACCATGACGAAAACGACAATGTGAAAGCC
TCGACAACGACTGTAACGAAACCACGTAAAAAGGGCGTCGACGATTTATT
AGGCTTGAAATTACGAAAACAAGCGCAACAGAAAGAACAAGAGGAAGAGA
GCGAGAAAGAGAAGAATGAACGTAAAGAAGAAGCAAATACAACTGTCGAA
AAACGCGAATCTCGTAACAGCGGCAGCAAACCAGTGTATTACAAATATGA
ACGTTATACGTCGCCGCCTCCTCCCTCACACCATCGAGAATATAGACAGG
GTTCCTCCTATATGGTACCCGTCCCAATCGTTCTTCATCCTCACTCCTCC
CATGGAGAGATCTGTTACAAGGACTGCTGTATGGTCCCTGCTACCTCTTA
CTACCCACACCACCCTCATGAAGGGGTCGAATACAGACGTACATATAGTA
GTGACAAAACAAGATGCTACAGTCCTGATTACGAAAGTGGTAGCTCTAAA
AAGACTTATGTTGTATATGGGGAGCGGCCACCTTCTTCCTCCCCTCCTAC
CCCTATGGTAGCTGCCAGGAGCAGGTCTCCCTCTCCACCGCAACAGACTG
AAAAAAGGGAGAAGACTCCCCCTTCAAAAGAGAAGTCACCTCAATCTTCA
CCTAAAGACACTGGAAATGAAACAGACTAAATAAAAGTTTCAGAGATTTC
CTCCTTTCCATCAACAATTTGGTCGCGATAAACTCTCTTTCctttttttg
tatatatttacTGCATTTGTGTTTTTCCTCATTTACCTTACCACAAAAAC
cgataattttttcctgcttttGTTTATATTCAAGATTTCGTTGTTAAAAG
ATTCACATGATATAGAAACAGCGTTTTTTCACCCTACAGATTTTCATATT
TGCCTTTTAGAATTCACTATTTGTCTTcgctgtttttgtttttgttttgt
ttgttcgTACCCAGTTATTTCAGCAAATGGCCATAAGATATTGAGAAATC
TGCTTGTACTTTTTCTGAAGGGACtatgaatacacgctttttggacctac
ccctGTGGGGTGGAGGTCCTATAAATTCACCTCTGTCCGTCCGTCCGTTC
GTTACCAGCTTTTCTCGAGATTgaatcataggaatcatttgatttttggt
acaaaggtgcaaaatggtggtggccaaaatgtgacg Run BLAST on NCBI transcript from alignment at scaffold_435:348688..356405+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00065265 ID=TCONS_00065265|Name=TCONS_00065265|organism=Clytia hemisphaerica|type=transcript|length=7718bp|location=Sequence derived from alignment at scaffold_435:348688..356405+ (Clytia hemisphaerica)
ATTTGTTCTCAGATACAAAAAGATGTTATTATATGCAATGCATTTTATAC
TTTGATGAGTTCTTGActgctttttttaatttttgttgcaTATCGTTCGG
TTGATATAGTATATTTGTATTAAATTGTCTGGACAAGTTCACCTTTGGTT
GTCTTTCTTGTAAGaactcttcatttttcatctttattttctatGCCTTA
CTGGTAGAATCTCCACTATTTAAACTCGTTGTCTTACTTCCATATGCTCC
TTATTCGTGTACTACCCATAATATCAGACTTGTCCCTCGTTTCACTCGAC
ACATGTTTTTATATATACGATATAGACACTTCTTCTTCTTAAGTACTTGG
ATGTTTAAATTATTTGGAATAGCTTCAATTAAACTTTCGGTTTGTGTTGA
CGGACTATAGTTTCAGTGCTCAAAGTTAAGCTCTGAACATTGCAGTATAT
TAGCAACGGAGCTGTTTGGAGCTTAGCGAATAAGATGTTCGTCGGTTACC
TAATTAATTATCAAACAGGAAGTAGAGTGTGGAGAGAGGGGAGGGGGAGA
AAAGTTCATTCTGTTACAGATTAATATCTAATGTTTTGTAGCTAGTTAAT
CCTCTTGCCACCTGTCGATCTCATACCTCTAGTCGTTGATCATTTACCAA
CATTCAACGGTATAAAAACAGTATTTTTTAAGAGGGTCGTTTTCTTATTA
TCtgatgaaaaaaagagaaaatcactTTTGACAGATTGAAAATNTCCTTC
ATACGTCGCGTATGGTGACTGTTGTTTGTTTTACtggattgaaatatttt
ttacacgAAAAGCAacgtttttggctgttaaataaTAATGTATTTGCATC
ATGACtgtagaaatttattttttattatttttctctaCGCAACAATGAAA
AgtctttttaaataatttgactGACATACTCCTCCCcctttttgtaaaat
gttgttaAATTAAAATGTACAGATAGGTGCCACTACAAAAGAATTACAAT
ATTCAATTatatttaatcattttttattgaattttaccTGAAATTATTTG
GCACGCGAGGCTGTTGGGTATTATTTTCTATCATTCAATGGGGATTTAGG
AAGTCAGGCTCTTCTTTACCCTAGGTACCTTTTCTATtggtgttttttct
tttcttttctcttgaCGTCGAAAACAATATGTTAAATGATTTCTCATTCT
AAAGAGTTTGCTATCATAATATTTTCATCAAAGCATTCAAACAAAACTCG
TCTTCTCATTGAATTATTCTGAATAGTCCTTTTGGCAGCTTAGCTTTTCt
gctcttttttcttcttcaattttttttttgaatagaaaAGAAAGGGTTTG
GgtataagtagagaacaaacaCAATAGGTTATAAACTattctttctttct
ttgattcGATTATTAATTtgaatgaagaaattttcatctttatttttttc
atagctGACATTTTAAATGAATGCGAACACCGGCAATCAAAGTATTGAAA
GAAGAACGCCTTTACTATTGAAAGCAGTTATTTAGAGTATtgttttctta
caacaataGATTATTAAAATGGATACAATAAAAACAGAAGAAAGTTGTTT
TGAAGAATAAGTATAATAAAACAAGTTGAAGAGGAGGAGGATTACTTCAG
AAGAAGAGTTTTCAAAAGTTGAAGCATCTTTTTGTAAAGAACTTTCATCA
TCATCCATCAAAAGGAGAATACCAACTATCTTATCTATCATTTGGTGGAA
GGAAGAAGAAGGAATCTTTTGTTCGACTTTCGATTGAGGTAAGacatttt
tatgtattttttcttttttttaatatgtATAGAAAAGGTTGTAAGAAAAA
CTTTTCCCCTTTTATNCCAACATTCAACGGTATAAAAACAGTATTTTTTA
AGAGGGTCGTTTTCTTATTATCtgatgaaaaaaagagaaaatcactTTTG
ACAGATTGAAAATTAGTGAAAGGatccttcttttttttttcattttattt
aaatGGGAAGAAAAAATAGCTTCTTTTGTTATGCTTACGATTCGCAAAAC
GTCCTCTATTCTTTTGTCTTCTATATGTTTTCTTAAACCATTGGCTATTA
TATTCCATTTTTCTTGTGCtgtttttataataataacTCTGAGGTTAATA
AATACTTATCGAGCAACAATAGAAAagactcaattttctttttaaatcca
AACTCTGTATTATGCTATTATTTACCTTTGTGTTTTGTTCTCTATTGTTT
ATCAATGACTAAGATTTATGTTGGATTTATAacaactttcttttcttttc
acaaaaaaacctCGTTATTACAAGCTGTGTGTGTAGTGTTGAGTTGAGGA
GAGGAGTCGTCGAATATACGAAGCGACGAGAAAAATTTTGGATGGAAAAA
AAGAATTCATTTCTCATAAATGATAAGAAGTTGATTGACctaaacacaaa
aaaataactttcagaAATGTAAgcagatctttttttttttgttttctttt
ctctgATAAAAAAGTCTTTCCTTTTGATACAACAATATTGAAGTTACTTC
CTCTTACTTAAGCTCAACTGAAATTTTCTTCTAGATACTTTAATATTAGT
TACCCTTCTAACCTGAATTTCCTACAGATATTTTCTCGCACAAATTCCGC
TGACTTGTTCTCTAGATCCAAGTTAATCTTAATTTTAATCACAAGGAGAA
CATTTTATTTAGTCCCCTTGTCATTGAGAAGTATATCATCCTCCCATCAT
CCCATGGATAGGAAAGCTATGATAGAATTAACTGTTTAAGTCTCGTGAAA
CTATTAAGTTTAAAACTAAAATGAAACTCACTTTTTAACCTCTGACCATA
ACCACTAATTACCTTGAAAGCCTATAATTaaatctgtaaaatacaacCTC
AGACGGTCAGAGAGAGACGAGAGAGATACATAACAAAACCCTCAAAGTTT
CTTTCTGGTGACCTGGAAGTGTTGTTCCAATGTTGTGGCTATGATTTCCA
CtcaaattatcaattttacTTATAAGAATAGATCATTATCAAAAGTTTAG
CTTTTAAAAGCTCTTCCTGttcaaaattattcttataaaaaactgatATT
TTATTAATACCTGACACTCGGTAACTAATTACTTGTTCCCTCATTGTCTT
ACCATTCGCGATTTGTTATAAGATTAGAAACCGTTTCTCAGGCTCCTTAA
ATTAAGACTAAATTCTGATCGTAATAAATGTAATGCTGCCATGTTGAGTG
AAAAGATCGGTTGGAAAAGTATCGCTCTAAACTTTTTTTATCGTCGAAAT
ACGTATCTATCGTATTTCCAAGCTTtccaaagtagtatttcttatgaaaa
atacaTTGTCAACACATTAAAAATGTATCAATTGATATTGCTCGACTGAA
CTTAGCAGCAGCCGTTTTTCAAATTACTGATGAATGCTCTTTCGTTGCCT
ACccttttgactttttaaagagGTTGCACAAAAGCTCTGATTTCTTATAT
AAAACCTTTACGAGTCAATCTTAAGTGAATCAATGGTTTTTTGTTCGTCA
atagaaacaaatttttatgatGTTGCTTGACAAAAGGTTgcttttacctt
tttttatcCTAGCTTGTAAAAGAAACTAAATATTCTGTTGTAGAGATGAA
ATGATTTATAACGGTAGAACTTCTTGTAAAACCATTCATTTCTTTTCTCT
TTAGTTCTTCAGTGTTCTTCATATGAATGGTTTTATGAAGATGTCGACTG
TTGTGAATCATGCTTATCCTAAACacagtttttgtttttcttagcATAGA
ATAAAGCGAGGCGATTATGATTCAACATTAAAGTTAAATACAATGAAATG
AGAAAGTTGTGGATTTATACTCTACTggttcatcaaagtcactcaaTAAG
AAAGATCGAGTGGTGTTTTCATTAGAGTGAAATCTCTCCTATATTTATTG
TTTGTGCACGCTTATAACAAAATCTGTTATAGGGATGCGTATGCAGCCTA
TGTATAATTTGACTTCTTTCTATCATTGAACACCGTTCCGCTCTTTCTCA
TCCTTCAGGGCGACATACGATAAGACGAAGACGTACACACTTGATGAACT
GATGGAGATGTCAAACTTGGAACCAGCTGGTCATCATGCTAAACCAAATC
ACATCAAACGACCGATGAACTCGTTCATGGTAAGAAGCAGATTCATATCC
CTCGGATgttgttaacttttttttagttttaagccttaaaatgttcttaa
catgctcttgTTATCGCCGTTTTGTGAGCACTTTTGTtcatttccctaag
aaatcgggtcTTATAGGGTCtgcaaaagccttaaaatgttcttaactggT
TCTTAGTAtattggccatcgaagccttatgttcttataaaaaatggcTAT
ATCATTGAGAGGATAATCGAAATGTTTTGCCATTAATGAAATGGGGGTGT
ACTTACGCAAAATGGGAGTTGGTTATGTGCGAGGTGTAAGGGTCTTGAAA
GACTCTCGCAGAggtttaaaaagcaatttagtcTAATAAGGTTCCAAGAT
TACGATACGCTCGGACATAACCGTCTCCTCAAAAACACAACTTCTTCAAG
GAGttcaatattttacaaatacatTACTTATTTCTAGCATATCTTTAAGT
TTTCTACTAAGAGCTTTTACAACTCAATTGGATTGGATTCTCACACTAGA
TAAATAGCACTTTAATTTAGGATAAATCTTTCTTCCATTCAAACTTTCTT
AAGCTTGAAAAACAAGAGCTGCAAAGGTTTCGAGCTGTAGatgttttcag
aaaatgaatATTTCTCTTCTATTCAAACAGGTTTGGTCGAGAATGGAACg
caagcgtatcagtgaagaaAATCCGAAACTTCACAATTCAGAGATCTCCA
AACGTCTTGGTGCTTCATGGAAAATGTTATCTGAAGAGGAACGAAAACCG
TTCGCTGAAGAGGCCAAAAGATTACGTCAGATTCACATCCAAGAACATCC
TGAGTATAAGTATCGTCCACGACGGAAGCCGAAACTGTCTGTCCCTACAC
AACATCATGTTCGTAAACATCAATCTACGGCTGCCGGCAAAACAGTACCC
ATTCCTATTCCTGAATATATACCATCTAGAAGTGGTTCACGTCCTGCAGT
GGTCCCTGTGTATTACCATAGTCCGCACTATATTCAACATCCTGGATCCA
CACGTGAAGGCCATCCTGTTCACTATCCAACTACCGCCCGTGAAGTCCGT
TACTACCGCCCTCGAAGTCCAGATTATAACGGGCGTTCAAGAAGCCCAGT
TGATCGTGATAGAGAGTACCGCCATTCACCGGGCGTTGTTTATCGATCAT
ATAGCCCACCTCCTCAACCTAGGNTAACTGGTTCTTAGTAtattggccat
cgaagccttatgttcttataaaaaatggcTATATCATTGAGAGGATAATC
GAAATGTTTTGCCATTAATGAAATGGGGGTGTACTTACGCAAAATGGGAG
TTGGTTATGTGCGAGGTGTAAGGGTCTTGAAAGACTCTCGCAGAggttta
aaaagcaatttagtcTAATAAGGTTCCAAGATTACGATACGCTCGGACAT
AACCGTCTCCTCAAAAACACAACTTCTTCAAGGAGtttaatattttacaa
atacatTACTTATTTCTAGCATATCTTTAAGTTTTCTACTAAGAGCTTTT
ACAACTCAATTGGATTGGATTCTCACACTAGATAAATAGCACTTTAATTT
AAGATAAATCTTTCTTCCATTCAAACTTTCTTAAGCTTGAAAAACAAGAG
CTGCAAAGGTTTCGAGCTGTAGatgttttcagaaaatgaatATTTCTCTT
CTATTCAAACAGGTTTGGTCGAGAATGGAACgcaagcgtatcagtgaaga
aAATCCGAAACTTCACAATTCAGAGATCTCCAAACGTCTTGGTGCTTCAT
GGAAAATGTTATCTGAAGAGGAACGAAAACCGTTCGCTGAAGAGGCCAAA
AGATTACGTCAGATTCACATCCAAGAACATCCTGAGTATAAGTATCGTCC
ACGACGGAAGCCGAAACTGTCTGTCCCTACACAACATCATGTTCGTAAAC
ATCAATCTACGGCTGCCGGCAAAACAGTACCCATTCCTATTCCTGAATAT
ATACCATCTAGAAGTGGTTCACGTCCTGCAGTGGTCCCTGTGTATTACCA
TAGTCCGCACTATATTCAACATCCTGGATCCACACGTGAAGGCCATCCTG
TTCACTATCCAACTACCGCCCGTGAAGTCCGTTACTACCGCCCTCGAAGT
CCAGATTATAACGGGCGTTCAAGAAGCCCAGTTGATCGTGATAGAGAGTA
CCGCCATTCACCGGGCGTTGTTTATCGATCATATAGCCCACCTCCTCAAC
CTAGAGAAGCGTACTACTATCAATCAAGATCAGAGGCTAAACAGAATAGT
TACCATGACGATGAGCCATCCGACGGCGAAAATAAAACTGACACAAACAC
TGAGGAGACGAACAATAACAACACCGAGAAAAAATCGTCGTCTGGCGAAA
ATAACCATGACGAAAACGACAATGTGAAAGCCTCGACAACGACTGTAACG
AAACCACGTAAAAAGGGCGTCGACGATTTATTAGGCTTGAAATTACGAAA
ACAAGCGCAACAGAAAGAACAAGAGGAAGAGAGCGAGAAAGAGAAGAATG
AACGTAAAGAAGAAGCAAATACAACTGTCGAAAAACGCGAATCTCGTAAC
AGCGGCAGCAAACCAGTGTATTACAAATATGAACGTTATACGTCGCCGCC
TCCTCCCTCACACCATCGAGAATATAGACAGGGTTCCTCCTATATGGTAC
CCGTCCCAATCGTTCTTCATCCTCACTCCTCCCATGGAGAGATCTGTTAC
AAGGACTGCTGTATGGTCCCTGCTACCTCTTACTACCCACACCACCCTCA
TGAAGGGGTCGAATACAGACGTACATATAGTAGTGACAAAACAAGATGCT
ACAGTCCTGATTACGAAAGTGGTAGCTCTAAAAAGACTTATGTTGTATAT
GGGGAGCGGCCACCTTCTTCCTCCCCTCCTACCCCTATGGTAGCTGCCAG
GAGCAGGTCTCCCTCTCCACCGCAACAGACTGAAAAAAGGGAGAAGACTC
CCCCTTCAAAAGAGAAGTCACCTCAATCTTCACCTAAAGACACTGGAAAT
GAAACAGACTAAATAAAAGTTTCAGAGATTTCCTCCTTTCCATCAACAAT
TTGGTCGCGATAAACTCTCTTTCctttttttgtatatatttacTGCATTT
GTGTTTTTCCTCATTTACCTTACCACAAAAACcgataattttttcctgct
tttGTTTATATTCAAGATTTCGTTGTTAAAAGATTCACATGATATAGAAA
CAGCGTTTTTTCACCCTACAGATTTTCATATTTGCCTTTTAGAATTCACT
ATTTGTCTTcgctgtttttgtttttgttttgtttgttcgTACCCAGTTAT
TTCAGCAAATGGCCATAAGATATTGAGAAATCTGCTTGTACTTTTTCTGA
AGGGACtatgaatacacgctttttggacctacccctGTGGGGTGGAGGTC
CTATAAATTCACCTCTGTCCGTCCGTCCGTTCGTTACCAGCTTTTCTCGA
GATTgaatcataggaatcatttgatttttggtacaaaggtgcaaaatggt
ggtggccaaaatgtgacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00065265-exon-scaffold_435-1491911889:348688..348846 | TCONS_00065265-exon-scaffold_435-1491911889:348688..348846 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1510915933:348688..348846 | TCONS_00065265-exon-scaffold_435-1510915933:348688..348846 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1575043694:348688..348846 | TCONS_00065265-exon-scaffold_435-1575043694:348688..348846 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1491911889:352746..352866 | TCONS_00065265-exon-scaffold_435-1491911889:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1510915933:352746..352866 | TCONS_00065265-exon-scaffold_435-1510915933:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1575043694:352746..352866 | TCONS_00065265-exon-scaffold_435-1575043694:352746..352866 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1491911889:354550..356405 | TCONS_00065265-exon-scaffold_435-1491911889:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1510915933:354550..356405 | TCONS_00065265-exon-scaffold_435-1510915933:354550..356405 | Clytia hemisphaerica | exon |
| TCONS_00065265-exon-scaffold_435-1575043694:354550..356405 | TCONS_00065265-exon-scaffold_435-1575043694:354550..356405 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_435 | supercontig | scaffold_435:348688..356405 + |
Blast
BLAST of TCONS_00065265 vs. Swiss-Prot (Human)
Match: SOX14 (Transcription factor SOX-14 OS=Homo sapiens GN=SOX14 PE=1 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 4.862e-34 Identity = 56/79 (70.89%), Postives = 73/79 (92.41%), Query Frame = 2
Query: 248 NHIKRPMNSFMVWSRMERKRISEENPKLHNSEISKRLGASWKMLSEEERKPFAEEAKRLRQIHIQEHPEYKYRPRRKPK 484
+HIKRPMN+FMVWSR +R+++++ENPK+HNSEISKRLGA WK+LSE E++P+ +EAKRLR H++EHP+YKYRPRRKPK
Sbjct: 6 DHIKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPK 84
The following BLAST results are available for this feature:
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